Wall clock time and date at job start Tue Mar 31 2020 19:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47455 * 2 1 4 4 O 1.42904 * 109.47001 * 120.00361 * 2 1 3 5 5 C 1.35901 * 117.00370 * 84.87960 * 4 2 1 6 6 C 1.38760 * 120.05308 * 354.57694 * 5 4 2 7 7 C 1.38114 * 119.94087 * 180.02562 * 6 5 4 8 8 C 1.38289 * 120.05970 * 359.97438 * 7 6 5 9 9 C 1.38247 * 120.11035 * 0.02562 * 8 7 6 10 10 C 1.38164 * 120.05426 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.02785 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47282 * 265.02200 * 11 10 9 13 13 O 1.20823 * 119.99907 * 0.02562 * 12 11 10 14 14 O 1.34223 * 120.00032 * 180.02562 * 12 11 10 15 15 C 1.45203 * 117.00112 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.47363 * 180.02562 * 15 14 12 17 17 O 1.21280 * 119.99736 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00153 * 179.97438 * 16 15 14 19 19 C 1.46503 * 120.00164 * 179.97438 * 18 16 15 20 20 C 1.50694 * 109.47067 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00520 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99831 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00373 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00137 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47433 * 59.99334 * 24 22 20 26 26 H 1.48494 * 109.47424 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46855 * 299.99691 * 24 22 20 28 28 H 1.08998 * 109.46735 * 300.00082 * 1 2 3 29 29 H 1.09002 * 109.46822 * 60.00030 * 1 2 3 30 30 H 1.09000 * 109.47251 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47156 * 240.00126 * 2 1 3 32 32 H 1.08999 * 109.47374 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46802 * 300.00281 * 3 2 1 34 34 H 1.09003 * 109.46835 * 59.99930 * 3 2 1 35 35 H 1.08000 * 120.02791 * 0.02562 * 6 5 4 36 36 H 1.08005 * 119.97048 * 179.72720 * 7 6 5 37 37 H 1.07995 * 119.94773 * 179.97438 * 8 7 6 38 38 H 1.07997 * 119.97290 * 179.97438 * 9 8 7 39 39 H 1.08996 * 109.46713 * 25.02384 * 11 10 9 40 40 H 1.09004 * 109.46871 * 145.02280 * 11 10 9 41 41 H 1.09002 * 109.46456 * 299.99658 * 15 14 12 42 42 H 1.09001 * 109.47233 * 59.99273 * 15 14 12 43 43 H 0.97001 * 119.99813 * 0.02562 * 18 16 15 44 44 H 1.08996 * 109.46976 * 300.00167 * 19 18 16 45 45 H 1.09002 * 109.46739 * 60.00336 * 19 18 16 46 46 H 0.96994 * 120.00734 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1101 -2.0271 1.0987 6 6 1.6558 -2.7032 -0.0246 7 6 1.7620 -4.0787 -0.0911 8 6 2.3209 -4.7819 0.9603 9 6 2.7742 -4.1106 2.0805 10 6 2.6703 -2.7347 2.1520 11 6 3.1642 -2.0036 3.3737 12 6 2.0159 -1.7799 4.3237 13 8 0.9101 -2.1743 4.0383 14 8 2.2217 -1.1427 5.4870 15 6 1.0701 -0.9632 6.3530 16 6 1.4901 -0.2330 7.6025 17 8 2.6463 0.1026 7.7490 18 7 0.5809 0.0471 8.5572 19 6 0.9894 0.7565 9.7722 20 6 -0.2059 0.9428 10.6708 21 1 -1.1731 0.5706 10.3672 22 6 -0.0648 1.5896 11.8803 23 7 1.1129 2.0434 12.2500 24 14 -1.5462 1.8201 12.9947 25 1 -2.1019 0.4924 13.3604 26 1 -1.1323 2.5392 14.2261 27 1 -2.5823 2.6113 12.2834 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.2196 -2.1544 -0.8462 36 1 1.4045 -4.6059 -0.9634 37 1 2.4026 -5.8575 0.9065 38 1 3.2099 -4.6621 2.9005 39 1 3.9332 -2.5981 3.8667 40 1 3.5829 -1.0419 3.0770 41 1 0.3101 -0.3817 5.8309 42 1 0.6615 -1.9376 6.6210 43 1 -0.3437 -0.2217 8.4401 44 1 1.7490 0.1749 10.2944 45 1 1.3982 1.7307 9.5040 46 1 1.2122 2.4981 13.1010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748952242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:37 Heat of formation + Delta-G solvation = -166.165013 kcal Electronic energy + Delta-G solvation = -28039.294403 eV Core-core repulsion = 23893.342462 eV Total energy + Delta-G solvation = -4145.951941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.91801 -41.19246 -40.33564 -38.70351 -37.50458 -36.19309 -34.53677 -34.42353 -33.57351 -31.10350 -30.78566 -29.12479 -28.21457 -27.97330 -24.71764 -24.37316 -23.29986 -21.85187 -21.66235 -21.55551 -19.34109 -19.02585 -18.86512 -17.94986 -17.84317 -17.09699 -17.04823 -16.88638 -16.55489 -16.35031 -16.16960 -15.82451 -15.58947 -15.05683 -14.69806 -14.52986 -14.34292 -14.14807 -14.05838 -13.76122 -13.72260 -13.54483 -13.26319 -13.14066 -13.09750 -12.96451 -12.75973 -12.68763 -12.34036 -12.24730 -12.11428 -11.90341 -11.72441 -11.69587 -11.54584 -11.53104 -10.92836 -10.81335 -9.94593 -9.85090 -9.10395 -8.29847 -6.46742 0.26857 0.50603 1.13051 1.34824 1.44601 1.47449 1.53413 1.56068 2.24236 2.33873 2.55723 2.87212 3.05028 3.56395 3.66213 3.79878 3.82257 3.87428 3.95039 4.02719 4.06525 4.08750 4.17609 4.26545 4.34562 4.51247 4.59638 4.65134 4.67216 4.77833 4.84405 4.93893 5.01580 5.06903 5.18368 5.20888 5.22741 5.29852 5.39203 5.40631 5.47829 5.59155 5.62080 5.81193 5.89217 6.48167 6.60293 6.63257 6.77677 7.19229 7.34125 8.82044 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017621 B = 0.002025 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.667684 B =13822.694368 C =14494.490311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 C -0.148 4.148 4 O -0.329 6.329 5 C 0.132 3.868 6 C -0.219 4.219 7 C -0.078 4.078 8 C -0.164 4.164 9 C -0.075 4.075 10 C -0.133 4.133 11 C -0.059 4.059 12 C 0.467 3.533 13 O -0.525 6.525 14 O -0.349 6.349 15 C 0.061 3.939 16 C 0.500 3.500 17 O -0.582 6.582 18 N -0.699 5.699 19 C 0.267 3.733 20 C -0.558 4.558 21 H 0.085 0.915 22 C 0.004 3.996 23 N -0.929 5.929 24 Si 0.986 3.014 25 H -0.262 1.262 26 H -0.285 1.285 27 H -0.262 1.262 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.412 0.588 44 H -0.007 1.007 45 H -0.008 1.008 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.368 -11.237 -30.743 32.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.015 3.985 3 C -0.205 4.205 4 O -0.244 6.244 5 C 0.087 3.913 6 C -0.237 4.237 7 C -0.096 4.096 8 C -0.182 4.182 9 C -0.093 4.093 10 C -0.134 4.134 11 C -0.096 4.096 12 C 0.311 3.689 13 O -0.413 6.413 14 O -0.265 6.265 15 C -0.016 4.016 16 C 0.286 3.714 17 O -0.463 6.463 18 N -0.350 5.350 19 C 0.144 3.856 20 C -0.596 4.596 21 H 0.103 0.897 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.809 3.191 25 H -0.187 1.187 26 H -0.211 1.211 27 H -0.187 1.187 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.248 0.752 44 H 0.011 0.989 45 H 0.010 0.990 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.235 -10.853 -30.387 32.267 hybrid contribution -0.981 0.330 0.833 1.329 sum -0.746 -10.523 -29.553 31.380 Atomic orbital electron populations 1.22370 0.94798 1.02771 1.03534 1.22700 0.94666 0.94197 0.86920 1.21896 1.02136 0.92811 1.03690 1.86116 1.81100 1.16593 1.40577 1.19020 0.94768 0.82853 0.94683 1.21490 1.07115 0.96338 0.98798 1.21341 0.95969 0.93119 0.99193 1.21354 1.01553 1.01310 0.93959 1.21184 0.97352 0.91850 0.98868 1.18802 1.06158 0.94092 0.94371 1.20188 0.94258 1.04541 0.90610 1.24298 0.91188 0.73295 0.80129 1.90641 1.26883 1.48435 1.75362 1.86568 1.39195 1.70672 1.30056 1.22686 0.87475 1.03140 0.88305 1.20663 0.85738 0.79962 0.85028 1.90680 1.20546 1.54882 1.80160 1.46053 1.12335 1.57562 1.19099 1.18632 0.95759 0.90062 0.81103 1.21571 0.95378 1.39097 1.03556 0.89658 1.26061 0.99655 0.94343 0.99487 1.70120 1.25412 1.38246 1.22997 0.85195 0.77959 0.78890 0.77100 1.18666 1.21092 1.18693 0.93080 0.88611 0.92523 0.89301 0.91620 0.88130 0.92717 0.83755 0.83189 0.83467 0.83765 0.84284 0.86100 0.86486 0.85975 0.75174 0.98901 0.98979 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 9.17 71.98 0.66 -1.90 16 2 C 0.07 1.07 2.85 30.59 0.09 1.15 16 3 C -0.15 -1.90 9.56 71.98 0.69 -1.21 16 4 O -0.33 -7.28 8.94 -92.43 -0.83 -8.11 16 5 C 0.13 2.83 6.57 22.51 0.15 2.98 16 6 C -0.22 -3.68 8.24 22.37 0.18 -3.49 16 7 C -0.08 -1.11 10.04 22.25 0.22 -0.88 16 8 C -0.16 -2.39 10.04 22.28 0.22 -2.17 16 9 C -0.07 -1.30 9.68 22.25 0.22 -1.09 16 10 C -0.13 -2.83 4.39 -19.77 -0.09 -2.92 16 11 C -0.06 -1.26 5.66 29.10 0.16 -1.10 16 12 C 0.47 13.32 7.95 71.24 0.57 13.89 16 13 O -0.52 -16.87 15.78 21.97 0.35 -16.52 16 14 O -0.35 -11.47 9.75 -45.00 -0.44 -11.91 16 15 C 0.06 1.90 5.94 71.23 0.42 2.32 16 16 C 0.50 20.85 7.91 87.66 0.69 21.55 16 17 O -0.58 -30.08 16.50 15.77 0.26 -29.82 16 18 N -0.70 -29.73 5.55 -466.80 -2.59 -32.32 16 19 C 0.27 14.63 5.43 85.63 0.46 15.09 16 20 C -0.56 -30.21 9.28 25.60 0.24 -29.97 16 21 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 22 C 0.00 0.24 5.46 84.66 0.46 0.71 16 23 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 24 Si 0.99 42.16 29.54 68.60 2.03 44.19 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 26 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 27 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.89 6.91 -2.39 -0.02 0.87 16 31 H 0.09 1.02 6.32 -2.39 -0.02 1.01 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.14 1.82 5.43 -2.91 -0.02 1.81 16 36 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 37 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 39 H 0.14 2.21 8.05 -2.39 -0.02 2.19 16 40 H 0.12 2.50 7.69 -2.38 -0.02 2.48 16 41 H 0.12 3.17 8.13 -2.39 -0.02 3.15 16 42 H 0.12 3.19 8.13 -2.39 -0.02 3.17 16 43 H 0.41 14.21 8.32 -92.71 -0.77 13.44 16 44 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 45 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 46 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -78.71 394.89 4.65 -74.07 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.23 Total: 23.05 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 5.36 Total: 12.95 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -2.30 Total: -87.91 kcal Atomic # 8 Polarization: -65.70 SS G_CDS: -0.66 Total: -66.36 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -78.71 4.65 -74.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748952242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.097 kcal (2) G-P(sol) polarization free energy of solvation -78.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds