Wall clock time and date at job start Tue Mar 31 2020 18:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47342 * 2 1 4 4 H 1.08999 * 109.46855 * 54.99495 * 3 2 1 5 5 O 1.42898 * 109.46736 * 295.00048 * 3 2 1 6 6 C 1.35905 * 117.00189 * 93.96472 * 5 3 2 7 7 C 1.38750 * 120.05510 * 2.68422 * 6 5 3 8 8 C 1.38117 * 119.94119 * 180.02562 * 7 6 5 9 9 C 1.38289 * 120.05988 * 359.97438 * 8 7 6 10 10 C 1.38239 * 120.10804 * 0.04151 * 9 8 7 11 11 C 1.50705 * 119.96981 * 179.97438 * 10 9 8 12 12 C 1.38173 * 120.05872 * 359.68229 * 10 9 8 13 13 C 1.50699 * 109.47405 * 174.99853 * 3 2 1 14 14 O 1.20819 * 119.99893 * 114.99734 * 13 3 2 15 15 O 1.34229 * 119.99670 * 294.99576 * 13 3 2 16 16 C 1.45204 * 116.99886 * 179.97438 * 15 13 3 17 17 C 1.50696 * 109.47258 * 180.02562 * 16 15 13 18 18 O 1.21286 * 119.99840 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00305 * 180.02562 * 17 16 15 20 20 C 1.46496 * 120.00550 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47398 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00365 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00233 * 180.02562 * 21 20 19 24 24 N 1.31527 * 119.99932 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00244 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47097 * 89.99868 * 25 23 21 27 27 H 1.48506 * 109.46851 * 209.99431 * 25 23 21 28 28 H 1.48490 * 109.46894 * 329.99588 * 25 23 21 29 29 H 1.09003 * 109.47459 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47275 * 300.00220 * 1 2 3 31 31 H 1.09000 * 109.46775 * 60.00397 * 1 2 3 32 32 H 1.08995 * 109.47702 * 239.99455 * 2 1 3 33 33 H 1.09009 * 109.47042 * 119.99633 * 2 1 3 34 34 H 1.08006 * 120.02800 * 0.02562 * 7 6 5 35 35 H 1.08003 * 119.96941 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.94712 * 180.02562 * 9 8 7 37 37 H 1.09004 * 109.47182 * 90.00471 * 11 10 9 38 38 H 1.08998 * 109.46872 * 209.99540 * 11 10 9 39 39 H 1.08992 * 109.47335 * 329.99813 * 11 10 9 40 40 H 1.08002 * 120.02793 * 180.29746 * 12 10 9 41 41 H 1.08995 * 109.47255 * 300.00999 * 16 15 13 42 42 H 1.09001 * 109.46810 * 60.00637 * 16 15 13 43 43 H 0.97007 * 119.99787 * 0.02562 * 19 17 16 44 44 H 1.08995 * 109.47410 * 300.00190 * 20 19 17 45 45 H 1.09002 * 109.47276 * 60.00238 * 20 19 17 46 46 H 0.96994 * 120.00292 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6619 2.0813 -1.2211 6 6 0.5039 2.7926 -1.2125 7 6 -0.2244 2.9204 -0.0385 8 6 -1.4012 3.6434 -0.0325 9 6 -1.8535 4.2401 -1.1952 10 6 -1.1298 4.1139 -2.3663 11 6 -1.6258 4.7650 -3.6317 12 6 0.0511 3.3965 -2.3762 13 6 3.5419 1.4443 0.1239 14 8 4.2224 1.8594 -0.7840 15 8 4.1235 0.9847 1.2429 16 6 5.5744 1.0160 1.2924 17 6 6.0440 0.4647 2.6139 18 8 5.2355 0.0826 3.4333 19 7 7.3623 0.3963 2.8854 20 6 7.8189 -0.1401 4.1699 21 6 9.3246 -0.1064 4.2217 22 1 9.8854 0.2760 3.3817 23 6 9.9863 -0.5646 5.3411 24 7 9.3034 -1.0308 6.3640 25 14 11.8527 -0.5221 5.4057 26 1 12.2988 0.7738 5.9773 27 1 12.3439 -1.6344 6.2582 28 1 12.3990 -0.6720 4.0331 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.1286 2.4550 0.8700 35 1 -1.9688 3.7429 0.8810 36 1 -2.7737 4.8053 -1.1884 37 1 -1.2203 5.7742 -3.7042 38 1 -1.3011 4.1803 -4.4924 39 1 -2.7146 4.8112 -3.6138 40 1 0.6185 3.3023 -3.2903 41 1 5.9787 0.4098 0.4818 42 1 5.9195 2.0443 1.1840 43 1 8.0089 0.7023 2.2302 44 1 7.4141 0.4651 4.9809 45 1 7.4743 -1.1687 4.2772 46 1 9.7688 -1.3529 7.1516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750407023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:38 Heat of formation + Delta-G solvation = -138.202527 kcal Electronic energy + Delta-G solvation = -27795.415458 eV Core-core repulsion = 23650.676061 eV Total energy + Delta-G solvation = -4144.739396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30001 -40.28376 -38.83065 -38.10342 -36.40042 -34.30293 -34.13628 -32.90834 -32.44573 -30.65577 -29.58637 -27.96878 -27.37418 -26.50598 -23.01268 -22.87555 -22.83539 -22.04696 -20.39753 -19.99421 -18.76553 -17.93738 -17.41759 -16.83073 -16.74067 -16.27008 -16.00583 -15.77186 -15.41483 -15.08416 -14.82352 -14.60456 -14.31174 -14.17163 -14.00209 -13.56401 -13.37216 -13.19008 -13.08988 -12.82258 -12.60418 -12.41649 -12.25673 -12.16023 -12.02474 -11.95209 -11.81850 -11.50463 -11.27179 -11.04195 -10.95065 -10.86565 -10.79153 -10.48909 -10.37016 -9.47236 -9.24618 -9.14419 -8.81291 -8.50410 -8.03494 -6.22278 -4.29879 0.95232 1.09189 1.80583 1.91095 3.05251 3.11247 3.21532 3.27946 3.30245 3.39176 3.83643 4.20386 4.28512 4.31024 4.44103 4.46791 4.53738 4.72239 4.83608 4.91923 4.96350 4.99861 5.08804 5.13529 5.14511 5.16551 5.22028 5.27779 5.30735 5.36549 5.50270 5.64783 5.66472 5.72242 5.88580 5.97049 6.07870 6.15101 6.22908 6.38652 6.98172 7.18226 7.25416 7.41958 7.49683 7.58939 7.88757 8.45015 8.67039 8.91234 9.36642 10.87797 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.029675 B = 0.001754 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.322136 B =15961.541489 C =16247.245815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.140 4.140 3 C 0.095 3.905 4 H 0.118 0.882 5 O -0.286 6.286 6 C 0.137 3.863 7 C -0.216 4.216 8 C -0.074 4.074 9 C -0.159 4.159 10 C -0.048 4.048 11 C -0.115 4.115 12 C -0.151 4.151 13 C 0.462 3.538 14 O -0.487 6.487 15 O -0.323 6.323 16 C 0.049 3.951 17 C 0.500 3.500 18 O -0.534 6.534 19 N -0.705 5.705 20 C 0.251 3.749 21 C -0.546 4.546 22 H 0.064 0.936 23 C 0.064 3.936 24 N -0.885 5.885 25 Si 0.906 3.094 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.272 1.272 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.393 0.607 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.728 8.732 -17.754 30.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.037 3.963 4 H 0.135 0.865 5 O -0.199 6.199 6 C 0.092 3.908 7 C -0.235 4.235 8 C -0.092 4.092 9 C -0.177 4.177 10 C -0.048 4.048 11 C -0.172 4.172 12 C -0.169 4.169 13 C 0.302 3.698 14 O -0.373 6.373 15 O -0.238 6.238 16 C -0.028 4.028 17 C 0.283 3.717 18 O -0.411 6.411 19 N -0.355 5.355 20 C 0.131 3.869 21 C -0.585 4.585 22 H 0.083 0.917 23 C -0.140 4.140 24 N -0.522 5.522 25 Si 0.733 3.267 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.197 1.197 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.149 0.851 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.226 0.774 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.890 8.441 -17.364 29.945 hybrid contribution 1.544 0.178 -0.012 1.555 sum -21.346 8.619 -17.376 28.842 Atomic orbital electron populations 1.21938 0.93977 1.02887 1.02442 1.22033 0.97719 0.92814 1.05162 1.21798 0.88754 0.96820 0.88889 0.86503 1.86160 1.37542 1.63112 1.33070 1.18968 0.85523 0.91901 0.94440 1.21359 0.98401 1.05993 0.97710 1.20925 0.94945 0.95079 0.98235 1.20962 1.01218 1.03041 0.92520 1.19709 0.93416 0.95909 0.95776 1.20818 1.01412 1.00628 0.94338 1.20284 0.97762 1.01847 0.97042 1.23159 0.91084 0.74963 0.80565 1.90702 1.64942 1.42052 1.39564 1.86515 1.23018 1.75554 1.38739 1.22943 0.77165 1.03806 0.98929 1.19833 0.84027 0.80473 0.87356 1.90712 1.53584 1.48370 1.48479 1.46368 1.04757 1.62861 1.21553 1.19189 0.94421 0.94709 0.78590 1.21207 0.90578 1.44092 1.02584 0.91741 1.24953 0.99204 0.94619 0.95178 1.69973 1.35963 1.40582 1.05644 0.86382 0.84311 0.77846 0.78189 1.20418 1.20957 1.19716 0.91522 0.91961 0.92078 0.89959 0.88203 0.84855 0.85562 0.85908 0.90803 0.91255 0.91248 0.85079 0.88246 0.88295 0.77370 0.95212 0.95192 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.45 37.15 0.31 -0.88 16 2 C -0.14 -1.29 5.62 -26.73 -0.15 -1.45 16 3 C 0.10 1.04 2.69 -27.88 -0.07 0.97 16 4 H 0.12 1.08 5.37 -51.93 -0.28 0.80 16 5 O -0.29 -3.42 9.20 -39.34 -0.36 -3.78 16 6 C 0.14 1.41 5.31 -39.22 -0.21 1.21 16 7 C -0.22 -1.89 7.16 -39.44 -0.28 -2.17 16 8 C -0.07 -0.56 10.04 -39.61 -0.40 -0.96 16 9 C -0.16 -1.17 9.70 -39.56 -0.38 -1.55 16 10 C -0.05 -0.38 5.88 -104.64 -0.62 -0.99 16 11 C -0.12 -0.61 10.01 36.01 0.36 -0.25 16 12 C -0.15 -1.42 9.64 -39.43 -0.38 -1.81 16 13 C 0.46 6.43 7.29 36.01 0.26 6.69 16 14 O -0.49 -7.90 16.26 -25.46 -0.41 -8.31 16 15 O -0.32 -4.92 9.72 -45.90 -0.45 -5.36 16 16 C 0.05 0.73 5.94 36.00 0.21 0.94 16 17 C 0.50 9.77 7.91 -10.99 -0.09 9.68 16 18 O -0.53 -12.68 16.50 -14.11 -0.23 -12.91 16 19 N -0.71 -14.30 5.55 -61.48 -0.34 -14.64 16 20 C 0.25 6.47 5.43 -5.20 -0.03 6.44 16 21 C -0.55 -14.49 9.28 -34.44 -0.32 -14.81 16 22 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 23 C 0.06 1.76 5.46 -17.81 -0.10 1.66 16 24 N -0.88 -25.59 13.29 55.43 0.74 -24.86 16 25 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 6.81 -51.93 -0.35 0.07 16 31 H 0.06 0.51 6.26 -51.93 -0.33 0.18 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.94 8.12 -51.92 -0.42 0.52 16 34 H 0.13 1.02 4.56 -52.48 -0.24 0.78 16 35 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 36 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 39 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 42 H 0.10 1.29 8.13 -51.93 -0.42 0.86 16 43 H 0.39 6.70 8.32 -40.82 -0.34 6.36 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 389.85 15.07 5.88 5.88 Total: -1.00 -33.88 389.85 -8.64 -42.52 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.56 Total: 3.23 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.87 Total: 2.73 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.40 Total: -39.50 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.46 Total: -30.37 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.88 -8.64 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750407023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.686 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds