Wall clock time and date at job start Tue Mar 31 2020 18:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47342 * 2 1 4 4 H 1.08999 * 109.46855 * 54.99495 * 3 2 1 5 5 O 1.42898 * 109.46736 * 295.00048 * 3 2 1 6 6 C 1.35905 * 117.00189 * 93.96472 * 5 3 2 7 7 C 1.38750 * 120.05510 * 2.68422 * 6 5 3 8 8 C 1.38117 * 119.94119 * 180.02562 * 7 6 5 9 9 C 1.38289 * 120.05988 * 359.97438 * 8 7 6 10 10 C 1.38239 * 120.10804 * 0.04151 * 9 8 7 11 11 C 1.50705 * 119.96981 * 179.97438 * 10 9 8 12 12 C 1.38173 * 120.05872 * 359.68229 * 10 9 8 13 13 C 1.50699 * 109.47405 * 174.99853 * 3 2 1 14 14 O 1.20819 * 119.99893 * 114.99734 * 13 3 2 15 15 O 1.34229 * 119.99670 * 294.99576 * 13 3 2 16 16 C 1.45204 * 116.99886 * 179.97438 * 15 13 3 17 17 C 1.50696 * 109.47258 * 180.02562 * 16 15 13 18 18 O 1.21286 * 119.99840 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00305 * 180.02562 * 17 16 15 20 20 C 1.46496 * 120.00550 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47398 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00365 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00233 * 180.02562 * 21 20 19 24 24 N 1.31527 * 119.99932 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00244 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47097 * 89.99868 * 25 23 21 27 27 H 1.48506 * 109.46851 * 209.99431 * 25 23 21 28 28 H 1.48490 * 109.46894 * 329.99588 * 25 23 21 29 29 H 1.09003 * 109.47459 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47275 * 300.00220 * 1 2 3 31 31 H 1.09000 * 109.46775 * 60.00397 * 1 2 3 32 32 H 1.08995 * 109.47702 * 239.99455 * 2 1 3 33 33 H 1.09009 * 109.47042 * 119.99633 * 2 1 3 34 34 H 1.08006 * 120.02800 * 0.02562 * 7 6 5 35 35 H 1.08003 * 119.96941 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.94712 * 180.02562 * 9 8 7 37 37 H 1.09004 * 109.47182 * 90.00471 * 11 10 9 38 38 H 1.08998 * 109.46872 * 209.99540 * 11 10 9 39 39 H 1.08992 * 109.47335 * 329.99813 * 11 10 9 40 40 H 1.08002 * 120.02793 * 180.29746 * 12 10 9 41 41 H 1.08995 * 109.47255 * 300.00999 * 16 15 13 42 42 H 1.09001 * 109.46810 * 60.00637 * 16 15 13 43 43 H 0.97007 * 119.99787 * 0.02562 * 19 17 16 44 44 H 1.08995 * 109.47410 * 300.00190 * 20 19 17 45 45 H 1.09002 * 109.47276 * 60.00238 * 20 19 17 46 46 H 0.96994 * 120.00292 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6619 2.0813 -1.2211 6 6 0.5039 2.7926 -1.2125 7 6 -0.2244 2.9204 -0.0385 8 6 -1.4012 3.6434 -0.0325 9 6 -1.8535 4.2401 -1.1952 10 6 -1.1298 4.1139 -2.3663 11 6 -1.6258 4.7650 -3.6317 12 6 0.0511 3.3965 -2.3762 13 6 3.5419 1.4443 0.1239 14 8 4.2224 1.8594 -0.7840 15 8 4.1235 0.9847 1.2429 16 6 5.5744 1.0160 1.2924 17 6 6.0440 0.4647 2.6139 18 8 5.2355 0.0826 3.4333 19 7 7.3623 0.3963 2.8854 20 6 7.8189 -0.1401 4.1699 21 6 9.3246 -0.1064 4.2217 22 1 9.8854 0.2760 3.3817 23 6 9.9863 -0.5646 5.3411 24 7 9.3034 -1.0308 6.3640 25 14 11.8527 -0.5221 5.4057 26 1 12.2988 0.7738 5.9773 27 1 12.3439 -1.6344 6.2582 28 1 12.3990 -0.6720 4.0331 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.1286 2.4550 0.8700 35 1 -1.9688 3.7429 0.8810 36 1 -2.7737 4.8053 -1.1884 37 1 -1.2203 5.7742 -3.7042 38 1 -1.3011 4.1803 -4.4924 39 1 -2.7146 4.8112 -3.6138 40 1 0.6185 3.3023 -3.2903 41 1 5.9787 0.4098 0.4818 42 1 5.9195 2.0443 1.1840 43 1 8.0089 0.7023 2.2302 44 1 7.4141 0.4651 4.9809 45 1 7.4743 -1.1687 4.2772 46 1 9.7688 -1.3529 7.1516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750407023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:37 Heat of formation + Delta-G solvation = -158.118977 kcal Electronic energy + Delta-G solvation = -27796.279100 eV Core-core repulsion = 23650.676061 eV Total energy + Delta-G solvation = -4145.603039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.26674 -41.25459 -40.36985 -38.88364 -37.61284 -36.20045 -34.89597 -34.42572 -33.45780 -31.35477 -30.96734 -29.21530 -28.05237 -27.86428 -24.72082 -23.64568 -23.52766 -23.13502 -21.68159 -21.22040 -19.60505 -19.34316 -18.58631 -18.14487 -17.94344 -17.33639 -17.02311 -16.92394 -16.77557 -16.46182 -16.12789 -15.84653 -15.40166 -14.81116 -14.77415 -14.66928 -14.41435 -14.24503 -14.15805 -13.96885 -13.83174 -13.70983 -13.31947 -13.11849 -12.95574 -12.94781 -12.78256 -12.72524 -12.51979 -12.23868 -12.12135 -12.03208 -11.98128 -11.60107 -11.50731 -11.43621 -10.94731 -10.82350 -9.94717 -9.75029 -9.17005 -8.30217 -6.46721 0.34491 0.44458 0.76575 0.81843 1.44280 1.45779 1.51998 1.57194 2.07329 2.36189 2.54991 2.78055 3.05157 3.31682 3.47568 3.53915 3.66987 3.87600 3.92079 3.98554 3.99568 4.12717 4.21605 4.30318 4.37050 4.43730 4.54304 4.66671 4.84634 4.87330 4.95168 4.96775 5.01513 5.03938 5.09313 5.21433 5.24166 5.26445 5.34515 5.40223 5.49183 5.61294 5.64813 5.79060 5.81396 6.26113 6.40965 6.61873 6.75190 7.19003 7.33427 8.81738 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.029675 B = 0.001754 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.322136 B =15961.541489 C =16247.245815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.098 3.902 4 H 0.134 0.866 5 O -0.305 6.305 6 C 0.114 3.886 7 C -0.222 4.222 8 C -0.077 4.077 9 C -0.161 4.161 10 C -0.052 4.052 11 C -0.115 4.115 12 C -0.169 4.169 13 C 0.466 3.534 14 O -0.512 6.512 15 O -0.335 6.335 16 C 0.059 3.941 17 C 0.502 3.498 18 O -0.580 6.580 19 N -0.698 5.698 20 C 0.266 3.734 21 C -0.558 4.558 22 H 0.086 0.914 23 C 0.006 3.994 24 N -0.929 5.929 25 Si 0.984 3.016 26 H -0.271 1.271 27 H -0.284 1.284 28 H -0.256 1.256 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.412 0.588 44 H -0.006 1.006 45 H -0.006 1.006 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.049 9.876 -19.071 31.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.040 3.960 4 H 0.151 0.849 5 O -0.219 6.219 6 C 0.070 3.930 7 C -0.241 4.241 8 C -0.094 4.094 9 C -0.179 4.179 10 C -0.052 4.052 11 C -0.171 4.171 12 C -0.188 4.188 13 C 0.308 3.692 14 O -0.399 6.399 15 O -0.251 6.251 16 C -0.018 4.018 17 C 0.287 3.713 18 O -0.461 6.461 19 N -0.349 5.349 20 C 0.144 3.856 21 C -0.596 4.596 22 H 0.104 0.896 23 C -0.194 4.194 24 N -0.567 5.567 25 Si 0.808 3.192 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.180 1.180 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.249 0.751 44 H 0.012 0.988 45 H 0.012 0.988 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.217 9.610 -18.735 31.343 hybrid contribution 1.522 -0.137 0.369 1.572 sum -21.695 9.472 -18.366 29.962 Atomic orbital electron populations 1.21901 0.92537 1.03598 1.02607 1.22024 0.98889 0.91595 1.04815 1.21918 0.86606 0.98014 0.89452 0.84877 1.86120 1.38621 1.63754 1.33421 1.19196 0.85539 0.92779 0.95476 1.21496 0.98800 1.06362 0.97399 1.21261 0.94551 0.94280 0.99347 1.21317 1.01818 1.02604 0.92135 1.20033 0.92752 0.95324 0.97122 1.20874 1.02368 1.00671 0.93195 1.20472 0.98711 1.02719 0.96895 1.23728 0.92137 0.73783 0.79560 1.90684 1.65698 1.43302 1.40222 1.86511 1.23052 1.75890 1.39622 1.22827 0.77568 1.05343 0.96064 1.20564 0.83078 0.79081 0.88547 1.90690 1.54660 1.50220 1.50512 1.46040 1.05881 1.62772 1.20248 1.18643 0.94582 0.92239 0.80145 1.21616 0.90813 1.43837 1.03349 0.89648 1.26030 1.04825 0.93914 0.94643 1.70128 1.38367 1.41723 1.06510 0.85160 0.77398 0.77851 0.78834 1.19679 1.20997 1.18017 0.90515 0.90919 0.92743 0.90447 0.88353 0.84104 0.83288 0.83578 0.90161 0.91026 0.89694 0.85453 0.85603 0.85710 0.75125 0.98825 0.98780 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.45 71.98 0.61 -1.52 16 2 C -0.14 -2.45 5.62 30.59 0.17 -2.28 16 3 C 0.10 2.10 2.69 29.85 0.08 2.18 16 4 H 0.13 2.37 5.37 -2.39 -0.01 2.36 16 5 O -0.31 -7.33 9.20 -73.44 -0.68 -8.00 16 6 C 0.11 2.33 5.31 22.51 0.12 2.45 16 7 C -0.22 -3.64 7.16 22.36 0.16 -3.48 16 8 C -0.08 -1.00 10.04 22.25 0.22 -0.78 16 9 C -0.16 -2.01 9.70 22.28 0.22 -1.79 16 10 C -0.05 -0.75 5.88 -19.88 -0.12 -0.87 16 11 C -0.11 -1.01 10.01 71.24 0.71 -0.30 16 12 C -0.17 -3.17 9.64 22.37 0.22 -2.96 16 13 C 0.47 12.73 7.29 71.24 0.52 13.25 16 14 O -0.51 -16.30 16.26 28.40 0.46 -15.84 16 15 O -0.34 -9.99 9.72 -45.05 -0.44 -10.43 16 16 C 0.06 1.67 5.94 71.23 0.42 2.09 16 17 C 0.50 19.65 7.91 87.66 0.69 20.34 16 18 O -0.58 -28.36 16.50 15.75 0.26 -28.10 16 19 N -0.70 -28.33 5.55 -466.81 -2.59 -30.92 16 20 C 0.27 14.18 5.43 85.63 0.46 14.65 16 21 C -0.56 -29.62 9.28 25.60 0.24 -29.38 16 22 H 0.09 4.07 7.60 -2.91 -0.02 4.05 16 23 C 0.01 0.32 5.46 84.65 0.46 0.78 16 24 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 25 Si 0.98 41.62 29.54 68.60 2.03 43.65 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 27 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 28 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.88 6.81 -2.39 -0.02 0.86 16 31 H 0.05 0.87 6.26 -2.39 -0.01 0.85 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.81 8.12 -2.38 -0.02 1.79 16 34 H 0.14 1.96 4.56 -2.91 -0.01 1.95 16 35 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 36 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 39 H 0.08 0.49 8.08 -2.39 -0.02 0.47 16 40 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 41 H 0.13 2.98 8.13 -2.39 -0.02 2.96 16 42 H 0.13 2.97 8.13 -2.39 -0.02 2.95 16 43 H 0.41 13.49 8.32 -92.70 -0.77 12.72 16 44 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 45 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 46 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -75.38 389.85 4.76 -70.62 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.23 Total: 21.34 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 5.19 Total: 12.38 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -2.30 Total: -85.62 kcal Atomic # 8 Polarization: -61.98 SS G_CDS: -0.39 Total: -62.37 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -75.38 4.76 -70.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750407023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.496 kcal (2) G-P(sol) polarization free energy of solvation -75.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds