Wall clock time and date at job start Tue Mar 31 2020 18:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46735 * 2 1 4 4 H 1.08995 * 109.47449 * 54.99863 * 3 2 1 5 5 O 1.42902 * 109.47016 * 294.99614 * 3 2 1 6 6 C 1.35901 * 116.99544 * 99.40604 * 5 3 2 7 7 C 1.38748 * 120.05888 * 354.33615 * 6 5 3 8 8 C 1.38125 * 119.94459 * 179.97438 * 7 6 5 9 9 C 1.38286 * 120.05526 * 359.97364 * 8 7 6 10 10 C 1.38242 * 120.11317 * 0.02562 * 9 8 7 11 11 C 1.38166 * 120.05298 * 0.30005 * 10 9 8 12 12 C 1.50699 * 120.02538 * 179.72020 * 11 10 9 13 13 C 1.50698 * 109.46901 * 175.00048 * 3 2 1 14 14 O 1.20829 * 120.00209 * 119.99761 * 13 3 2 15 15 O 1.34232 * 120.00289 * 299.99662 * 13 3 2 16 16 C 1.45199 * 117.00235 * 180.02562 * 15 13 3 17 17 C 1.50701 * 109.46921 * 180.02562 * 16 15 13 18 18 O 1.21278 * 120.00256 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99816 * 180.02562 * 17 16 15 20 20 C 1.46506 * 120.00000 * 179.97438 * 19 17 16 21 21 C 1.50691 * 109.46977 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00369 * 359.97438 * 21 20 19 23 23 C 1.37885 * 119.99836 * 179.97438 * 21 20 19 24 24 N 1.31510 * 119.99743 * 179.97438 * 23 21 20 25 25 Si 1.86792 * 120.00008 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.47310 * 89.99590 * 25 23 21 27 27 H 1.48495 * 109.47333 * 209.99739 * 25 23 21 28 28 H 1.48507 * 109.47094 * 329.99791 * 25 23 21 29 29 H 1.09003 * 109.47354 * 60.00280 * 1 2 3 30 30 H 1.09000 * 109.47106 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47483 * 300.00214 * 1 2 3 32 32 H 1.08994 * 109.47178 * 239.99814 * 2 1 3 33 33 H 1.09003 * 109.47354 * 119.99720 * 2 1 3 34 34 H 1.08004 * 120.02820 * 359.97438 * 7 6 5 35 35 H 1.08008 * 119.97056 * 180.02562 * 8 7 6 36 36 H 1.08006 * 119.93865 * 180.02562 * 9 8 7 37 37 H 1.07996 * 119.97316 * 180.02562 * 10 9 8 38 38 H 1.09006 * 109.47210 * 89.99913 * 12 11 10 39 39 H 1.09001 * 109.47480 * 209.99952 * 12 11 10 40 40 H 1.09001 * 109.47359 * 330.00363 * 12 11 10 41 41 H 1.09003 * 109.47212 * 300.00287 * 16 15 13 42 42 H 1.08998 * 109.47238 * 60.00479 * 16 15 13 43 43 H 0.97002 * 120.00133 * 359.97438 * 19 17 16 44 44 H 1.09000 * 109.46761 * 299.99908 * 20 19 17 45 45 H 1.08998 * 109.46739 * 59.99882 * 20 19 17 46 46 H 0.97007 * 119.99575 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 8 1.6619 2.0813 -1.2211 6 6 0.5663 2.8846 -1.1836 7 6 -0.1988 2.9630 -0.0288 8 6 -1.3115 3.7806 0.0068 9 6 -1.6630 4.5210 -1.1070 10 6 -0.9023 4.4446 -2.2588 11 6 0.2078 3.6231 -2.3018 12 6 1.0329 3.5355 -3.5598 13 6 3.5418 1.4444 0.1238 14 8 4.2190 1.9417 -0.7445 15 8 4.1273 0.8935 1.1988 16 6 5.5778 0.9319 1.2515 17 6 6.0520 0.2710 2.5202 18 8 5.2467 -0.1867 3.3030 19 7 7.3709 0.1896 2.7853 20 6 7.8319 -0.4523 4.0189 21 6 9.3373 -0.4126 4.0736 22 1 9.8950 0.0447 3.2696 23 6 10.0027 -0.9600 5.1500 24 7 11.3165 -0.9258 5.1974 25 14 9.0382 -1.7515 6.5401 26 1 8.8396 -3.1936 6.2464 27 1 9.7912 -1.6044 7.8115 28 1 7.7169 -1.0857 6.6675 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.0755 2.3853 0.8415 35 1 -1.9072 3.8423 0.9057 36 1 -2.5332 5.1599 -1.0769 37 1 -1.1786 5.0241 -3.1273 38 1 1.8188 4.2904 -3.5322 39 1 1.4826 2.5452 -3.6312 40 1 0.3941 3.7078 -4.4260 41 1 5.9868 0.4018 0.3913 42 1 5.9148 1.9683 1.2335 43 1 8.0150 0.5561 2.1593 44 1 7.4226 0.0776 4.8790 45 1 7.4952 -1.4888 4.0368 46 1 11.7847 -1.3113 5.9546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750464184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:47 Heat of formation + Delta-G solvation = -133.989027 kcal Electronic energy + Delta-G solvation = -28144.872955 eV Core-core repulsion = 24000.316269 eV Total energy + Delta-G solvation = -4144.556685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35605 -40.35089 -38.96232 -37.98204 -36.45034 -34.44112 -34.33259 -32.84376 -32.47085 -30.65544 -29.80585 -28.32468 -27.13498 -26.78353 -23.54342 -22.78810 -22.03139 -21.93989 -20.71532 -20.19055 -18.78338 -18.08984 -17.50405 -16.89876 -16.84432 -16.19664 -16.03173 -15.87869 -15.63811 -15.14279 -14.87326 -14.74780 -14.23948 -14.17577 -13.87114 -13.51322 -13.41449 -13.23422 -13.04718 -12.89315 -12.61599 -12.54314 -12.41481 -12.30831 -12.18934 -12.11658 -11.74281 -11.53704 -11.36096 -11.10565 -10.93363 -10.90257 -10.80070 -10.52474 -10.03383 -9.58061 -9.41827 -9.17880 -8.85196 -8.48084 -8.32340 -6.27051 -4.30372 0.94629 1.04107 1.76868 1.88901 2.95786 2.99873 3.22821 3.29861 3.37100 3.38006 3.73004 4.16631 4.25459 4.28034 4.39720 4.43932 4.51736 4.71635 4.78754 4.91653 4.93682 5.00494 5.04904 5.06459 5.09949 5.15493 5.21169 5.28967 5.32307 5.45117 5.51722 5.61620 5.62972 5.85719 5.91543 5.96195 6.09096 6.10164 6.17277 6.38685 6.68444 6.94448 6.96670 7.03666 7.27739 7.45604 8.00028 8.36832 8.62801 8.75233 9.31708 10.84663 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025227 B = 0.001953 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.673565 B =14331.214268 C =14758.962172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.138 4.138 3 C 0.095 3.905 4 H 0.118 0.882 5 O -0.282 6.282 6 C 0.128 3.872 7 C -0.207 4.207 8 C -0.085 4.085 9 C -0.153 4.153 10 C -0.085 4.085 11 C -0.111 4.111 12 C -0.107 4.107 13 C 0.460 3.540 14 O -0.485 6.485 15 O -0.324 6.324 16 C 0.049 3.951 17 C 0.503 3.497 18 O -0.536 6.536 19 N -0.698 5.698 20 C 0.222 3.778 21 C -0.547 4.547 22 H 0.081 0.919 23 C 0.078 3.922 24 N -0.890 5.890 25 Si 0.877 3.123 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.261 1.261 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.135 0.865 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.400 0.600 44 H 0.028 0.972 45 H 0.024 0.976 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.421 8.633 -15.164 31.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C 0.037 3.963 4 H 0.135 0.865 5 O -0.195 6.195 6 C 0.083 3.917 7 C -0.226 4.226 8 C -0.103 4.103 9 C -0.171 4.171 10 C -0.103 4.103 11 C -0.112 4.112 12 C -0.164 4.164 13 C 0.300 3.700 14 O -0.371 6.371 15 O -0.240 6.240 16 C -0.028 4.028 17 C 0.286 3.714 18 O -0.414 6.414 19 N -0.349 5.349 20 C 0.101 3.899 21 C -0.585 4.585 22 H 0.099 0.901 23 C -0.126 4.126 24 N -0.527 5.527 25 Si 0.703 3.297 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.185 1.185 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.152 0.848 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.233 0.767 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -26.433 8.332 -14.882 31.458 hybrid contribution 0.169 -0.168 0.632 0.675 sum -26.264 8.165 -14.250 30.976 Atomic orbital electron populations 1.21926 0.94055 1.02896 1.02361 1.22014 0.97633 0.92729 1.05195 1.21834 0.88545 0.96919 0.88953 0.86492 1.86149 1.42969 1.58635 1.31729 1.18829 0.87051 0.91343 0.94460 1.21396 0.98482 1.04512 0.98177 1.20933 0.95827 0.95117 0.98455 1.21072 1.00976 1.01506 0.93547 1.20909 0.93749 0.97232 0.98400 1.19304 0.98321 0.98429 0.95130 1.20638 0.98936 1.03393 0.93438 1.23281 0.91210 0.75543 0.79959 1.90710 1.65108 1.41254 1.40048 1.86506 1.22809 1.72166 1.42473 1.22892 0.77345 1.03441 0.99117 1.19873 0.83806 0.80961 0.86770 1.90700 1.53874 1.47934 1.48876 1.46074 1.05004 1.58715 1.25091 1.19563 0.95721 0.92892 0.81742 1.21062 0.88497 1.40692 1.08254 0.90104 1.24793 0.94846 0.95033 0.97912 1.69876 1.06917 1.44570 1.31303 0.86812 0.80746 0.80456 0.81651 1.19773 1.20818 1.18484 0.92038 0.91496 0.92079 0.89940 0.88167 0.84796 0.85657 0.85860 0.85340 0.91156 0.90929 0.91693 0.88046 0.88103 0.76651 0.95391 0.95838 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 8.48 37.16 0.32 -0.80 16 2 C -0.14 -1.21 5.60 -26.73 -0.15 -1.36 16 3 C 0.10 0.99 2.65 -27.89 -0.07 0.92 16 4 H 0.12 1.02 5.43 -51.93 -0.28 0.74 16 5 O -0.28 -3.19 8.16 -39.38 -0.32 -3.51 16 6 C 0.13 1.29 5.62 -39.22 -0.22 1.07 16 7 C -0.21 -1.75 7.36 -39.43 -0.29 -2.04 16 8 C -0.09 -0.63 10.04 -39.61 -0.40 -1.02 16 9 C -0.15 -1.07 10.04 -39.56 -0.40 -1.47 16 10 C -0.08 -0.64 9.70 -39.61 -0.38 -1.03 16 11 C -0.11 -1.03 5.89 -104.47 -0.62 -1.65 16 12 C -0.11 -0.89 9.79 36.00 0.35 -0.54 16 13 C 0.46 6.11 7.33 36.00 0.26 6.37 16 14 O -0.49 -7.58 16.25 -25.48 -0.41 -7.99 16 15 O -0.32 -4.68 9.56 -45.91 -0.44 -5.12 16 16 C 0.05 0.70 5.94 36.01 0.21 0.91 16 17 C 0.50 9.27 7.91 -10.98 -0.09 9.18 16 18 O -0.54 -11.92 16.50 -14.10 -0.23 -12.15 16 19 N -0.70 -13.53 5.55 -61.47 -0.34 -13.87 16 20 C 0.22 5.30 4.50 -5.19 -0.02 5.27 16 21 C -0.55 -14.65 9.83 -34.44 -0.34 -14.99 16 22 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 23 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 24 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 25 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 29 H 0.06 0.48 6.53 -51.93 -0.34 0.14 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.38 6.73 -51.93 -0.35 0.03 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.89 7.99 -51.93 -0.42 0.48 16 34 H 0.13 0.96 4.27 -52.48 -0.22 0.74 16 35 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 36 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.68 7.54 -51.93 -0.39 0.29 16 40 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 41 H 0.10 1.24 8.13 -51.93 -0.42 0.82 16 42 H 0.10 1.25 8.13 -51.93 -0.42 0.82 16 43 H 0.40 6.67 8.32 -40.82 -0.34 6.33 16 44 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 45 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 46 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -33.76 385.05 -8.26 -42.02 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.49 Total: 2.85 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.93 Total: 0.90 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.43 Total: -39.10 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -1.41 Total: -28.78 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.76 -8.26 -42.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750464184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.966 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds