Wall clock time and date at job start Tue Mar 31 2020 19:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46769 * 2 1 4 4 C 1.50706 * 109.46774 * 119.99468 * 2 1 3 5 5 C 1.38229 * 119.99714 * 59.73368 * 4 2 1 6 6 C 1.38245 * 119.99411 * 179.78568 * 5 4 2 7 7 C 1.38222 * 120.00139 * 0.43719 * 6 5 4 8 8 C 1.38238 * 120.00279 * 359.81276 * 7 6 5 9 9 C 1.38235 * 119.99750 * 239.99660 * 4 2 1 10 10 C 1.53000 * 109.47283 * 239.99715 * 2 1 3 11 11 C 1.52995 * 109.46916 * 179.97438 * 10 2 1 12 12 O 1.42897 * 109.46689 * 299.99983 * 10 2 1 13 13 C 1.50695 * 109.46928 * 59.99942 * 10 2 1 14 14 O 1.20825 * 120.00224 * 25.00005 * 13 10 2 15 15 O 1.34232 * 119.99727 * 205.00080 * 13 10 2 16 16 C 1.45206 * 116.99878 * 180.02562 * 15 13 10 17 17 C 1.50699 * 109.47021 * 179.97438 * 16 15 13 18 18 O 1.21282 * 120.00041 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00033 * 180.02562 * 17 16 15 20 20 C 1.46500 * 120.00165 * 179.97438 * 19 17 16 21 21 C 1.50696 * 109.46948 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00198 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99749 * 179.97438 * 21 20 19 24 24 N 1.31514 * 119.99702 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 119.99833 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47188 * 90.00313 * 25 23 21 27 27 H 1.48501 * 109.47085 * 209.99892 * 25 23 21 28 28 H 1.48498 * 109.47634 * 330.00128 * 25 23 21 29 29 H 1.09003 * 109.47017 * 300.00166 * 1 2 3 30 30 H 1.09004 * 109.46764 * 60.00462 * 1 2 3 31 31 H 1.08997 * 109.46953 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00308 * 359.97438 * 5 4 2 33 33 H 1.07997 * 119.99378 * 180.27086 * 6 5 4 34 34 H 1.08001 * 120.00420 * 179.83794 * 7 6 5 35 35 H 1.08003 * 120.00378 * 179.97438 * 8 7 6 36 36 H 1.07998 * 120.00041 * 359.97438 * 9 4 2 37 37 H 1.08997 * 109.47168 * 299.99881 * 11 10 2 38 38 H 1.09003 * 109.47439 * 59.99901 * 11 10 2 39 39 H 1.09000 * 109.46895 * 179.97438 * 11 10 2 40 40 H 0.96698 * 114.00743 * 60.00304 * 12 10 2 41 41 H 1.09004 * 109.47122 * 299.99817 * 16 15 13 42 42 H 1.09000 * 109.47070 * 59.99842 * 16 15 13 43 43 H 0.97004 * 119.99472 * 359.97438 * 19 17 16 44 44 H 1.08996 * 109.47197 * 300.00087 * 20 19 17 45 45 H 1.09004 * 109.46923 * 59.99390 * 20 19 17 46 46 H 0.97005 * 119.99651 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.6938 -2.0321 1.4522 6 6 2.1582 -2.6849 2.5788 7 6 2.9535 -2.0134 3.4882 8 6 3.2879 -0.6900 3.2692 9 6 2.8271 -0.0384 2.1404 10 6 2.0401 -0.7213 -1.2492 11 6 3.5700 -0.7207 -1.2494 12 8 1.5637 -2.0685 -1.2490 13 6 1.5378 -0.0110 -2.4796 14 8 1.2504 1.1614 -2.4254 15 8 1.4096 -0.6807 -3.6359 16 6 0.9205 0.0674 -4.7803 17 6 0.8435 -0.8422 -5.9793 18 8 1.1683 -2.0064 -5.8791 19 7 0.4136 -0.3619 -7.1630 20 6 0.3393 -1.2460 -8.3288 21 6 -0.1684 -0.4696 -9.5164 22 1 -0.4110 0.5777 -9.4132 23 6 -0.3222 -1.0962 -10.7350 24 7 -0.7648 -0.4185 -11.7715 25 14 0.0980 -2.9075 -10.9135 26 1 -1.1058 -3.7262 -10.6207 27 1 0.5533 -3.1755 -12.3013 28 1 1.1806 -3.2608 -9.9604 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.0690 -2.5556 0.7437 33 1 1.8973 -3.7189 2.7497 34 1 3.3142 -2.5226 4.3696 35 1 3.9090 -0.1652 3.9799 36 1 3.0884 0.9954 1.9692 37 1 3.9330 0.3071 -1.2497 38 1 3.9338 -1.2342 -0.3594 39 1 3.9334 -1.2350 -2.1391 40 1 0.5998 -2.1450 -1.2491 41 1 -0.0710 0.4626 -4.5592 42 1 1.6010 0.8918 -4.9932 43 1 0.1535 0.5691 -7.2429 44 1 1.3310 -1.6408 -8.5493 45 1 -0.3410 -2.0708 -8.1164 46 1 -0.8734 -0.8594 -12.6287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759546573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:30 Heat of formation + Delta-G solvation = -147.182946 kcal Electronic energy + Delta-G solvation = -28605.520412 eV Core-core repulsion = 24460.391595 eV Total energy + Delta-G solvation = -4145.128817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.39516 -39.90341 -38.93848 -37.73390 -36.56132 -34.40295 -34.05287 -32.45501 -31.39210 -31.07533 -29.74060 -29.54781 -27.27724 -24.86065 -24.17208 -22.86306 -22.22987 -21.48902 -20.20395 -20.09594 -18.81533 -17.63697 -17.08571 -16.95739 -16.90457 -16.40509 -15.92896 -15.50302 -15.20403 -15.11279 -14.96848 -14.46923 -14.27647 -13.98476 -13.70774 -13.52435 -13.14618 -13.02204 -12.94397 -12.84293 -12.71063 -12.43846 -12.40892 -12.31994 -12.07769 -11.98204 -11.86665 -11.38925 -11.20008 -11.09054 -10.91901 -10.87115 -10.77378 -10.13392 -10.01739 -9.56447 -9.36860 -9.18544 -9.00853 -8.83721 -8.29494 -6.26075 -4.29277 1.01765 1.13213 1.84056 2.19061 2.99722 3.24104 3.30996 3.39071 3.47649 3.66757 3.74694 4.07237 4.29255 4.31095 4.43896 4.56205 4.64030 4.71570 4.85987 4.92749 4.98354 5.01780 5.07852 5.11360 5.18065 5.20778 5.25673 5.31059 5.37158 5.46996 5.57200 5.68634 5.74809 5.78210 5.81311 6.14689 6.18274 6.24735 6.32754 6.70485 6.71002 6.98683 7.01451 7.07329 7.29518 7.49424 8.02329 8.38713 8.65599 8.77385 9.32938 10.85628 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.030517 B = 0.002017 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.294561 B =13876.823589 C =14308.588918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.067 4.067 3 H 0.101 0.899 4 C -0.075 4.075 5 C -0.097 4.097 6 C -0.122 4.122 7 C -0.122 4.122 8 C -0.124 4.124 9 C -0.114 4.114 10 C 0.162 3.838 11 C -0.142 4.142 12 O -0.527 6.527 13 C 0.436 3.564 14 O -0.501 6.501 15 O -0.315 6.315 16 C 0.044 3.956 17 C 0.501 3.499 18 O -0.533 6.533 19 N -0.700 5.700 20 C 0.222 3.778 21 C -0.547 4.547 22 H 0.081 0.919 23 C 0.078 3.922 24 N -0.890 5.890 25 Si 0.877 3.123 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.260 1.260 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.381 0.619 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.399 0.601 44 H 0.028 0.972 45 H 0.023 0.977 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.942 1.090 30.944 31.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.086 4.086 3 H 0.119 0.881 4 C -0.075 4.075 5 C -0.115 4.115 6 C -0.140 4.140 7 C -0.140 4.140 8 C -0.142 4.142 9 C -0.132 4.132 10 C 0.119 3.881 11 C -0.199 4.199 12 O -0.333 6.333 13 C 0.278 3.722 14 O -0.389 6.389 15 O -0.229 6.229 16 C -0.033 4.033 17 C 0.284 3.716 18 O -0.410 6.410 19 N -0.350 5.350 20 C 0.101 3.899 21 C -0.585 4.585 22 H 0.099 0.901 23 C -0.126 4.126 24 N -0.527 5.527 25 Si 0.703 3.297 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.185 1.185 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.149 0.851 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.230 0.770 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.233 0.767 44 H 0.046 0.954 45 H 0.041 0.959 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.660 0.442 30.750 31.466 hybrid contribution -0.643 -0.026 -0.427 0.772 sum 6.018 0.416 30.323 30.917 Atomic orbital electron populations 1.21992 0.93415 1.02400 1.03661 1.20672 0.97067 1.00162 0.90657 0.88069 1.19517 0.98277 0.94457 0.95225 1.21251 0.99536 0.93918 0.96789 1.21190 0.98233 0.99973 0.94633 1.21169 0.98561 0.94883 0.99417 1.21102 1.00404 0.95021 0.97651 1.21063 0.97816 0.99849 0.94450 1.21092 0.97052 0.82686 0.87281 1.21827 0.89501 1.03527 1.05048 1.86696 1.27346 1.23235 1.96059 1.24821 0.74975 0.86721 0.85693 1.90675 1.45696 1.17069 1.85447 1.86658 1.75980 1.42578 1.17718 1.22888 1.01787 0.94510 0.84128 1.19901 0.79240 0.88415 0.84010 1.90718 1.48495 1.17345 1.84472 1.46073 1.64734 1.14964 1.09262 1.19556 0.97273 0.90462 0.82645 1.21064 1.46115 0.98610 0.92665 0.90135 1.24792 0.93937 0.98497 0.95349 1.69879 1.44846 1.36810 1.01187 0.86814 0.79904 0.85025 0.77944 1.19772 1.20820 1.18459 0.91110 0.91337 0.92166 0.85092 0.86109 0.86332 0.86194 0.86127 0.90364 0.89675 0.90293 0.77001 0.88334 0.88305 0.76747 0.95413 0.95868 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 8.41 37.16 0.31 -0.90 16 2 C -0.07 -0.55 1.70 -91.77 -0.16 -0.71 16 3 H 0.10 0.85 7.61 -51.93 -0.39 0.45 16 4 C -0.07 -0.60 3.52 -104.62 -0.37 -0.97 16 5 C -0.10 -0.78 8.29 -39.58 -0.33 -1.11 16 6 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 7 C -0.12 -0.86 10.05 -39.59 -0.40 -1.26 16 8 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 9 C -0.11 -0.85 9.67 -39.58 -0.38 -1.23 16 10 C 0.16 1.60 0.79 -91.78 -0.07 1.53 16 11 C -0.14 -1.32 8.58 37.16 0.32 -1.00 16 12 O -0.53 -5.26 10.07 -49.12 -0.49 -5.75 16 13 C 0.44 5.43 6.00 36.00 0.22 5.65 16 14 O -0.50 -6.73 14.76 -18.75 -0.28 -7.01 16 15 O -0.32 -4.70 9.51 -48.35 -0.46 -5.16 16 16 C 0.04 0.63 5.94 36.01 0.21 0.85 16 17 C 0.50 9.46 7.91 -10.99 -0.09 9.38 16 18 O -0.53 -12.27 16.50 -14.11 -0.23 -12.50 16 19 N -0.70 -13.76 5.55 -61.47 -0.34 -14.10 16 20 C 0.22 5.36 4.50 -5.20 -0.02 5.34 16 21 C -0.55 -14.74 9.83 -34.44 -0.34 -15.07 16 22 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 23 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 24 N -0.89 -26.11 13.96 55.43 0.77 -25.33 16 25 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.26 -6.24 6.54 56.52 0.37 -5.88 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.62 6.46 -51.93 -0.34 0.28 16 31 H 0.06 0.38 6.01 -51.93 -0.31 0.07 16 32 H 0.13 0.97 5.51 -52.49 -0.29 0.68 16 33 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 36 H 0.12 0.73 7.95 -52.49 -0.42 0.31 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.75 7.22 -51.93 -0.37 0.37 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.38 2.84 6.99 45.56 0.32 3.16 16 41 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 42 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 43 H 0.40 6.74 8.32 -40.82 -0.34 6.40 16 44 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 45 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 46 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 381.17 15.07 5.74 5.74 Total: -1.00 -33.98 381.17 -7.81 -41.79 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.87 Total: 5.82 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.99 Total: 0.00 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.43 Total: -39.43 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -1.46 Total: -30.42 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.98 -7.81 -41.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759546573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.394 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds