Wall clock time and date at job start Tue Mar 31 2020 19:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46769 * 2 1 4 4 C 1.50706 * 109.46774 * 119.99468 * 2 1 3 5 5 C 1.38229 * 119.99714 * 59.73368 * 4 2 1 6 6 C 1.38245 * 119.99411 * 179.78568 * 5 4 2 7 7 C 1.38222 * 120.00139 * 0.43719 * 6 5 4 8 8 C 1.38238 * 120.00279 * 359.81276 * 7 6 5 9 9 C 1.38235 * 119.99750 * 239.99660 * 4 2 1 10 10 C 1.53000 * 109.47283 * 239.99715 * 2 1 3 11 11 C 1.52995 * 109.46916 * 179.97438 * 10 2 1 12 12 O 1.42897 * 109.46689 * 299.99983 * 10 2 1 13 13 C 1.50695 * 109.46928 * 59.99942 * 10 2 1 14 14 O 1.20825 * 120.00224 * 25.00005 * 13 10 2 15 15 O 1.34232 * 119.99727 * 205.00080 * 13 10 2 16 16 C 1.45206 * 116.99878 * 180.02562 * 15 13 10 17 17 C 1.50699 * 109.47021 * 179.97438 * 16 15 13 18 18 O 1.21282 * 120.00041 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00033 * 180.02562 * 17 16 15 20 20 C 1.46500 * 120.00165 * 179.97438 * 19 17 16 21 21 C 1.50696 * 109.46948 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00198 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99749 * 179.97438 * 21 20 19 24 24 N 1.31514 * 119.99702 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 119.99833 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47188 * 90.00313 * 25 23 21 27 27 H 1.48501 * 109.47085 * 209.99892 * 25 23 21 28 28 H 1.48498 * 109.47634 * 330.00128 * 25 23 21 29 29 H 1.09003 * 109.47017 * 300.00166 * 1 2 3 30 30 H 1.09004 * 109.46764 * 60.00462 * 1 2 3 31 31 H 1.08997 * 109.46953 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00308 * 359.97438 * 5 4 2 33 33 H 1.07997 * 119.99378 * 180.27086 * 6 5 4 34 34 H 1.08001 * 120.00420 * 179.83794 * 7 6 5 35 35 H 1.08003 * 120.00378 * 179.97438 * 8 7 6 36 36 H 1.07998 * 120.00041 * 359.97438 * 9 4 2 37 37 H 1.08997 * 109.47168 * 299.99881 * 11 10 2 38 38 H 1.09003 * 109.47439 * 59.99901 * 11 10 2 39 39 H 1.09000 * 109.46895 * 179.97438 * 11 10 2 40 40 H 0.96698 * 114.00743 * 60.00304 * 12 10 2 41 41 H 1.09004 * 109.47122 * 299.99817 * 16 15 13 42 42 H 1.09000 * 109.47070 * 59.99842 * 16 15 13 43 43 H 0.97004 * 119.99472 * 359.97438 * 19 17 16 44 44 H 1.08996 * 109.47197 * 300.00087 * 20 19 17 45 45 H 1.09004 * 109.46923 * 59.99390 * 20 19 17 46 46 H 0.97005 * 119.99651 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.6938 -2.0321 1.4522 6 6 2.1582 -2.6849 2.5788 7 6 2.9535 -2.0134 3.4882 8 6 3.2879 -0.6900 3.2692 9 6 2.8271 -0.0384 2.1404 10 6 2.0401 -0.7213 -1.2492 11 6 3.5700 -0.7207 -1.2494 12 8 1.5637 -2.0685 -1.2490 13 6 1.5378 -0.0110 -2.4796 14 8 1.2504 1.1614 -2.4254 15 8 1.4096 -0.6807 -3.6359 16 6 0.9205 0.0674 -4.7803 17 6 0.8435 -0.8422 -5.9793 18 8 1.1683 -2.0064 -5.8791 19 7 0.4136 -0.3619 -7.1630 20 6 0.3393 -1.2460 -8.3288 21 6 -0.1684 -0.4696 -9.5164 22 1 -0.4110 0.5777 -9.4132 23 6 -0.3222 -1.0962 -10.7350 24 7 -0.7648 -0.4185 -11.7715 25 14 0.0980 -2.9075 -10.9135 26 1 -1.1058 -3.7262 -10.6207 27 1 0.5533 -3.1755 -12.3013 28 1 1.1806 -3.2608 -9.9604 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.0690 -2.5556 0.7437 33 1 1.8973 -3.7189 2.7497 34 1 3.3142 -2.5226 4.3696 35 1 3.9090 -0.1652 3.9799 36 1 3.0884 0.9954 1.9692 37 1 3.9330 0.3071 -1.2497 38 1 3.9338 -1.2342 -0.3594 39 1 3.9334 -1.2350 -2.1391 40 1 0.5998 -2.1450 -1.2491 41 1 -0.0710 0.4626 -4.5592 42 1 1.6010 0.8918 -4.9932 43 1 0.1535 0.5691 -7.2429 44 1 1.3310 -1.6408 -8.5493 45 1 -0.3410 -2.0708 -8.1164 46 1 -0.8734 -0.8594 -12.6287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759546573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:29 Heat of formation + Delta-G solvation = -169.206955 kcal Electronic energy + Delta-G solvation = -28606.475445 eV Core-core repulsion = 24460.391595 eV Total energy + Delta-G solvation = -4146.083849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.30947 -40.84573 -40.22525 -38.51463 -37.63111 -36.22096 -34.72633 -34.47557 -32.10722 -31.64835 -31.08360 -30.31016 -28.91698 -25.69598 -24.93539 -24.01424 -23.38995 -22.32608 -21.74764 -20.89039 -19.76684 -19.25569 -18.32755 -18.00548 -17.69647 -17.47495 -17.07820 -16.91466 -16.34769 -16.15951 -16.00630 -15.59575 -15.30959 -15.03045 -14.84365 -14.47330 -14.31188 -14.23642 -14.09507 -13.74826 -13.65597 -13.53307 -13.44970 -13.17779 -13.09209 -13.01418 -12.75712 -12.71577 -12.46398 -11.97660 -11.94681 -11.93398 -11.78684 -11.68668 -11.65935 -11.06900 -10.93312 -10.85722 -10.05943 -9.72082 -9.56161 -8.41027 -6.48665 0.46079 0.59741 0.87337 1.14726 1.33004 1.36153 1.47243 1.49980 2.27333 2.38792 2.93046 2.94329 2.97841 3.30747 3.50642 3.65335 3.72580 3.82957 4.00206 4.01286 4.08911 4.22762 4.33426 4.37644 4.42567 4.60626 4.64510 4.69550 4.72699 4.73584 4.85428 4.97584 4.98992 5.04737 5.11602 5.14811 5.21096 5.23444 5.28091 5.38358 5.65572 5.72260 5.77222 6.04237 6.18740 6.28306 6.50853 6.58084 6.70486 7.10382 7.25877 8.73427 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.030517 B = 0.002017 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.294561 B =13876.823589 C =14308.588918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.058 4.058 3 H 0.100 0.900 4 C -0.081 4.081 5 C -0.109 4.109 6 C -0.134 4.134 7 C -0.129 4.129 8 C -0.130 4.130 9 C -0.122 4.122 10 C 0.165 3.835 11 C -0.142 4.142 12 O -0.535 6.535 13 C 0.440 3.560 14 O -0.510 6.510 15 O -0.336 6.336 16 C 0.053 3.947 17 C 0.504 3.496 18 O -0.576 6.576 19 N -0.697 5.697 20 C 0.232 3.768 21 C -0.549 4.549 22 H 0.062 0.938 23 C 0.027 3.973 24 N -0.929 5.929 25 Si 0.937 3.063 26 H -0.264 1.264 27 H -0.274 1.274 28 H -0.260 1.260 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.390 0.610 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.413 0.587 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.425 0.926 32.924 33.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 H 0.119 0.881 4 C -0.081 4.081 5 C -0.127 4.127 6 C -0.152 4.152 7 C -0.147 4.147 8 C -0.148 4.148 9 C -0.140 4.140 10 C 0.123 3.877 11 C -0.199 4.199 12 O -0.344 6.344 13 C 0.282 3.718 14 O -0.398 6.398 15 O -0.251 6.251 16 C -0.024 4.024 17 C 0.290 3.710 18 O -0.456 6.456 19 N -0.349 5.349 20 C 0.109 3.891 21 C -0.587 4.587 22 H 0.080 0.920 23 C -0.174 4.174 24 N -0.568 5.568 25 Si 0.760 3.240 26 H -0.189 1.189 27 H -0.199 1.199 28 H -0.184 1.184 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.241 0.759 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.249 0.751 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.130 0.314 32.752 33.521 hybrid contribution -0.793 0.083 -0.969 1.255 sum 6.338 0.396 31.783 32.412 Atomic orbital electron populations 1.21985 0.93072 1.03075 1.03232 1.20590 0.97325 0.99824 0.89920 0.88136 1.19503 0.98843 0.94547 0.95256 1.21368 0.99944 0.94150 0.97217 1.21421 0.98419 1.00698 0.94668 1.21453 0.98202 0.95125 0.99872 1.21383 1.00376 0.95183 0.97830 1.21278 0.97630 1.00537 0.94527 1.21207 0.97292 0.82622 0.86619 1.21853 0.89146 1.04239 1.04615 1.86684 1.28386 1.23332 1.95968 1.25344 0.74373 0.86687 0.85397 1.90667 1.46185 1.17533 1.85453 1.86659 1.76425 1.43541 1.18438 1.22790 1.03974 0.93265 0.82365 1.20573 0.77456 0.88346 0.84635 1.90695 1.50180 1.19526 1.85208 1.45866 1.65073 1.15212 1.08716 1.19170 0.96098 0.90537 0.83292 1.21270 1.45517 0.98104 0.93780 0.92007 1.25593 0.93920 1.02674 0.95171 1.69979 1.46259 1.38690 1.01873 0.85867 0.79852 0.80062 0.78189 1.18900 1.19874 1.18397 0.90482 0.92706 0.91027 0.84950 0.85030 0.84643 0.84401 0.84967 0.89144 0.89112 0.91635 0.75911 0.85724 0.86009 0.75103 0.96569 0.96575 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.41 71.98 0.61 -1.58 16 2 C -0.06 -0.87 1.70 -11.54 -0.02 -0.89 16 3 H 0.10 1.53 7.61 -2.38 -0.02 1.51 16 4 C -0.08 -1.18 3.52 -19.87 -0.07 -1.25 16 5 C -0.11 -1.62 8.29 22.27 0.18 -1.43 16 6 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 7 C -0.13 -1.58 10.05 22.27 0.22 -1.35 16 8 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 9 C -0.12 -1.60 9.67 22.27 0.22 -1.38 16 10 C 0.17 3.07 0.79 -11.54 -0.01 3.07 16 11 C -0.14 -2.48 8.58 71.98 0.62 -1.86 16 12 O -0.54 -10.18 10.07 -135.70 -1.37 -11.54 16 13 C 0.44 10.33 6.00 71.23 0.43 10.76 16 14 O -0.51 -12.82 14.76 21.97 0.32 -12.50 16 15 O -0.34 -9.58 9.51 -42.75 -0.41 -9.99 16 16 C 0.05 1.41 5.94 71.24 0.42 1.84 16 17 C 0.50 18.55 7.91 87.66 0.69 19.24 16 18 O -0.58 -26.35 16.50 15.76 0.26 -26.09 16 19 N -0.70 -26.88 5.55 -466.79 -2.59 -29.47 16 20 C 0.23 11.15 4.50 85.63 0.38 11.53 16 21 C -0.55 -29.73 9.83 25.60 0.25 -29.48 16 22 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 23 C 0.03 1.51 5.47 84.66 0.46 1.97 16 24 N -0.93 -54.88 13.96 21.45 0.30 -54.58 16 25 Si 0.94 43.47 27.47 68.60 1.88 45.35 16 26 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 28 H -0.26 -11.95 6.54 99.48 0.65 -11.29 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.92 6.46 -2.39 -0.02 0.91 16 31 H 0.07 0.81 6.01 -2.39 -0.01 0.79 16 32 H 0.13 1.83 5.51 -2.91 -0.02 1.81 16 33 H 0.13 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.13 1.34 7.95 -2.91 -0.02 1.32 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.49 7.22 -2.39 -0.02 1.47 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.39 5.44 6.99 -74.06 -0.52 4.93 16 41 H 0.13 2.71 8.13 -2.38 -0.02 2.70 16 42 H 0.12 2.74 8.13 -2.39 -0.02 2.72 16 43 H 0.41 13.54 8.32 -92.71 -0.77 12.77 16 44 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 45 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 46 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -72.15 381.17 2.92 -69.24 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -0.33 Total: 23.36 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 4.84 Total: 6.23 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -2.29 Total: -84.05 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -1.19 Total: -60.13 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Total: -72.15 2.92 -69.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759546573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.971 kcal (2) G-P(sol) polarization free energy of solvation -72.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds