Wall clock time and date at job start Tue Mar 31 2020 19:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47470 * 2 1 4 4 C 1.50700 * 109.47280 * 119.99899 * 2 1 3 5 5 C 1.38238 * 119.99586 * 49.95602 * 4 2 1 6 6 C 1.38236 * 119.99804 * 179.78832 * 5 4 2 7 7 C 1.38237 * 120.00124 * 0.44773 * 6 5 4 8 8 C 1.38241 * 119.99895 * 359.80950 * 7 6 5 9 9 C 1.38232 * 120.00040 * 359.97438 * 8 7 6 10 10 C 1.52998 * 109.47214 * 239.99992 * 2 1 3 11 11 C 1.52996 * 109.47174 * 62.65655 * 10 2 1 12 12 O 1.42902 * 109.47154 * 302.65481 * 10 2 1 13 13 C 1.50704 * 109.47222 * 182.65654 * 10 2 1 14 14 O 1.20833 * 119.99907 * 333.17828 * 13 10 2 15 15 O 1.34228 * 120.00085 * 153.18306 * 13 10 2 16 16 C 1.45200 * 116.99850 * 180.02562 * 15 13 10 17 17 C 1.50705 * 109.47025 * 179.97438 * 16 15 13 18 18 O 1.21279 * 119.99956 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99870 * 180.02562 * 17 16 15 20 20 C 1.46500 * 119.99728 * 179.97438 * 19 17 16 21 21 C 1.50696 * 109.47228 * 179.97438 * 20 19 17 22 22 H 1.08006 * 119.99816 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00591 * 179.97438 * 21 20 19 24 24 N 1.31521 * 119.99507 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00431 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47033 * 60.00106 * 25 23 21 27 27 H 1.48494 * 109.47026 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46948 * 300.00345 * 25 23 21 29 29 H 1.08991 * 109.47358 * 174.63560 * 1 2 3 30 30 H 1.08997 * 109.47244 * 294.63938 * 1 2 3 31 31 H 1.09007 * 109.46795 * 54.63416 * 1 2 3 32 32 H 1.07993 * 120.00458 * 0.02562 * 5 4 2 33 33 H 1.07996 * 120.00478 * 180.27913 * 6 5 4 34 34 H 1.07996 * 120.00299 * 179.83567 * 7 6 5 35 35 H 1.08003 * 119.99993 * 180.02562 * 8 7 6 36 36 H 1.07996 * 120.00347 * 179.97438 * 9 8 7 37 37 H 1.09003 * 109.47643 * 57.20830 * 11 10 2 38 38 H 1.08999 * 109.47313 * 177.20876 * 11 10 2 39 39 H 1.09001 * 109.46860 * 297.20658 * 11 10 2 40 40 H 0.96697 * 113.99784 * 291.38175 * 12 10 2 41 41 H 1.08998 * 109.47425 * 299.99533 * 16 15 13 42 42 H 1.09002 * 109.47273 * 60.00135 * 16 15 13 43 43 H 0.96999 * 120.00048 * 359.97438 * 19 17 16 44 44 H 1.08998 * 109.47079 * 300.00112 * 20 19 17 45 45 H 1.09008 * 109.46993 * 59.99839 * 20 19 17 46 46 H 0.96994 * 119.99550 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.5365 -1.9583 1.5589 6 6 2.0005 -2.6119 2.6851 7 6 2.9535 -2.0136 3.4881 8 6 3.4454 -0.7633 3.1626 9 6 2.9848 -0.1117 2.0339 10 6 2.0400 -0.7212 -1.2492 11 6 1.5853 0.0375 -2.4975 12 8 1.5134 -2.0493 -1.2808 13 6 3.5456 -0.7785 -1.2167 14 8 4.1695 0.0650 -0.6174 15 8 4.1935 -1.7665 -1.8537 16 6 5.6436 -1.7590 -1.7793 17 6 6.1920 -2.9343 -2.5469 18 8 5.4353 -3.7028 -3.1015 19 7 7.5235 -3.1319 -2.6161 20 6 8.0565 -4.2747 -3.3617 21 6 9.5615 -4.2669 -3.2847 22 1 10.0701 -3.4887 -2.7349 23 6 10.2893 -5.2537 -3.9152 24 7 9.6700 -6.2016 -4.5843 25 14 12.1548 -5.2444 -3.8191 26 1 12.5777 -5.3388 -2.3988 27 1 12.6951 -6.4027 -4.5750 28 1 12.6744 -3.9839 -4.4076 29 1 -0.3633 -1.0231 -0.0961 30 1 -0.3633 0.4284 0.9341 31 1 -0.3633 0.5949 -0.8381 32 1 0.7895 -2.4243 0.9335 33 1 1.6165 -3.5887 2.9393 34 1 3.3141 -2.5230 4.3695 35 1 4.1903 -0.2960 3.7897 36 1 3.3687 0.8652 1.7798 37 1 1.9455 1.0652 -2.4495 38 1 1.9900 -0.4481 -3.3855 39 1 0.4964 0.0361 -2.5471 40 1 1.8656 -2.6286 -0.5913 41 1 6.0248 -0.8333 -2.2105 42 1 5.9544 -1.8294 -0.7369 43 1 8.1287 -2.5174 -2.1722 44 1 7.6751 -5.2000 -2.9301 45 1 7.7460 -4.2050 -4.4043 46 1 10.1820 -6.8956 -5.0282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759546574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:33 Heat of formation + Delta-G solvation = -150.914339 kcal Electronic energy + Delta-G solvation = -29156.267428 eV Core-core repulsion = 25010.976806 eV Total energy + Delta-G solvation = -4145.290622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31672 -39.71801 -38.72115 -37.67183 -36.43160 -34.26011 -34.07278 -32.41837 -31.47689 -31.08303 -29.46057 -28.84300 -26.79624 -25.69689 -23.49660 -22.73692 -22.48595 -21.51152 -20.14649 -19.93608 -18.58928 -17.58755 -17.13698 -16.79128 -16.75974 -16.25474 -15.68971 -15.53043 -15.16029 -14.95865 -14.62602 -14.45296 -14.23555 -13.76918 -13.60379 -13.43465 -13.10434 -12.89937 -12.80724 -12.79586 -12.63823 -12.42581 -12.16505 -12.03810 -11.97254 -11.77027 -11.68770 -11.48595 -11.06921 -11.04104 -10.91669 -10.71633 -10.57028 -10.35578 -10.20796 -9.46517 -9.18129 -9.12808 -8.93889 -8.78635 -7.99517 -6.20219 -4.27857 1.07320 1.18796 1.97247 2.28716 3.17090 3.23397 3.28292 3.29737 3.50736 3.79889 3.88576 4.17494 4.31157 4.33250 4.52967 4.67940 4.79500 4.82090 4.93973 4.97578 5.09432 5.10664 5.15594 5.20925 5.24881 5.32602 5.34685 5.36561 5.39494 5.54013 5.57585 5.75876 5.81407 5.86737 5.92999 6.23601 6.27087 6.31796 6.38332 6.77476 7.10191 7.21952 7.30119 7.45097 7.56646 7.64027 7.91286 8.49009 8.70245 8.95611 9.38468 10.89900 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.002481 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.603037 B =11285.004840 C =12073.708811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 H 0.098 0.902 4 C -0.094 4.094 5 C -0.128 4.128 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.121 4.121 9 C -0.093 4.093 10 C 0.161 3.839 11 C -0.144 4.144 12 O -0.533 6.533 13 C 0.434 3.566 14 O -0.498 6.498 15 O -0.317 6.317 16 C 0.046 3.954 17 C 0.499 3.501 18 O -0.531 6.531 19 N -0.707 5.707 20 C 0.252 3.748 21 C -0.546 4.546 22 H 0.063 0.937 23 C 0.064 3.936 24 N -0.885 5.885 25 Si 0.905 3.095 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.383 0.617 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.392 0.608 44 H 0.029 0.971 45 H 0.029 0.971 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.255 14.554 13.863 27.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 H 0.117 0.883 4 C -0.094 4.094 5 C -0.145 4.145 6 C -0.137 4.137 7 C -0.138 4.138 8 C -0.139 4.139 9 C -0.111 4.111 10 C 0.118 3.882 11 C -0.201 4.201 12 O -0.341 6.341 13 C 0.275 3.725 14 O -0.385 6.385 15 O -0.232 6.232 16 C -0.032 4.032 17 C 0.282 3.718 18 O -0.408 6.408 19 N -0.357 5.357 20 C 0.132 3.868 21 C -0.584 4.584 22 H 0.082 0.918 23 C -0.140 4.140 24 N -0.522 5.522 25 Si 0.732 3.268 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.234 0.766 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.225 0.775 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.860 14.257 12.987 26.974 hybrid contribution 2.031 0.077 0.858 2.206 sum -16.829 14.333 13.844 26.083 Atomic orbital electron populations 1.21818 0.92363 1.03346 1.02185 1.20703 0.97434 0.99972 0.90235 0.88349 1.19809 0.97751 0.95259 0.96624 1.21215 1.00612 0.94929 0.97789 1.21174 0.97490 0.99943 0.95079 1.21214 0.97251 0.95519 0.99808 1.21199 0.99917 0.95439 0.97332 1.21125 0.95742 1.00285 0.93979 1.21122 0.83545 0.85936 0.97588 1.21872 1.03728 0.99420 0.95103 1.86611 1.68408 1.20421 1.58641 1.24781 0.92707 0.79358 0.75655 1.90644 1.68954 1.38828 1.40100 1.86639 1.20943 1.48193 1.67388 1.22897 0.77976 0.99931 1.02364 1.19869 0.83815 0.85966 0.82163 1.90720 1.57611 1.46389 1.46085 1.46365 1.04673 1.31045 1.53631 1.19167 0.93325 0.82750 0.91586 1.21168 0.90522 1.12039 1.34720 0.91845 1.24952 0.99323 0.94973 0.94709 1.69965 1.36155 1.13473 1.32574 0.86448 0.84296 0.77720 0.78301 1.20033 1.21017 1.20030 0.91147 0.91969 0.91745 0.85158 0.85839 0.86094 0.86044 0.85700 0.90259 0.90272 0.89457 0.76633 0.88595 0.88700 0.77494 0.95269 0.95261 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.25 37.16 0.31 -0.67 16 2 C -0.06 -0.57 1.68 -91.77 -0.15 -0.73 16 3 H 0.10 0.85 7.72 -51.93 -0.40 0.45 16 4 C -0.09 -0.93 3.88 -104.62 -0.41 -1.34 16 5 C -0.13 -1.17 7.39 -39.58 -0.29 -1.46 16 6 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 7 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 8 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 9 C -0.09 -0.97 8.47 -39.58 -0.34 -1.30 16 10 C 0.16 1.72 0.79 -91.77 -0.07 1.65 16 11 C -0.14 -1.29 8.46 37.16 0.31 -0.98 16 12 O -0.53 -6.08 11.18 -49.69 -0.56 -6.63 16 13 C 0.43 5.90 6.06 36.01 0.22 6.12 16 14 O -0.50 -7.07 14.42 -18.76 -0.27 -7.34 16 15 O -0.32 -5.16 9.48 -48.41 -0.46 -5.62 16 16 C 0.05 0.72 5.94 36.01 0.21 0.93 16 17 C 0.50 10.17 7.91 -10.98 -0.09 10.08 16 18 O -0.53 -13.18 16.50 -14.10 -0.23 -13.41 16 19 N -0.71 -14.76 5.55 -61.47 -0.34 -15.10 16 20 C 0.25 6.62 5.43 -5.20 -0.03 6.60 16 21 C -0.55 -14.68 9.28 -34.44 -0.32 -14.99 16 22 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 24 N -0.88 -25.90 13.29 55.43 0.74 -25.16 16 25 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 6.84 -51.92 -0.36 0.02 16 32 H 0.13 1.02 5.75 -52.49 -0.30 0.71 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 36 H 0.13 1.25 7.87 -52.49 -0.41 0.84 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.63 6.76 -51.93 -0.35 0.28 16 40 H 0.38 4.05 6.22 45.56 0.28 4.33 16 41 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 42 H 0.09 1.31 8.13 -51.93 -0.42 0.89 16 43 H 0.39 6.89 8.32 -40.82 -0.34 6.55 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.03 0.85 8.14 -51.92 -0.42 0.43 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 383.39 15.07 5.78 5.78 Total: -1.00 -33.90 383.39 -8.27 -42.17 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.97 Total: 8.60 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.93 Total: 1.04 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.40 Total: -40.26 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.52 Total: -33.00 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.90 -8.27 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759546574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.747 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds