Wall clock time and date at job start Tue Mar 31 2020 19:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47470 * 2 1 4 4 C 1.50700 * 109.47280 * 119.99899 * 2 1 3 5 5 C 1.38238 * 119.99586 * 49.95602 * 4 2 1 6 6 C 1.38236 * 119.99804 * 179.78832 * 5 4 2 7 7 C 1.38237 * 120.00124 * 0.44773 * 6 5 4 8 8 C 1.38241 * 119.99895 * 359.80950 * 7 6 5 9 9 C 1.38232 * 120.00040 * 359.97438 * 8 7 6 10 10 C 1.52998 * 109.47214 * 239.99992 * 2 1 3 11 11 C 1.52996 * 109.47174 * 62.65655 * 10 2 1 12 12 O 1.42902 * 109.47154 * 302.65481 * 10 2 1 13 13 C 1.50704 * 109.47222 * 182.65654 * 10 2 1 14 14 O 1.20833 * 119.99907 * 333.17828 * 13 10 2 15 15 O 1.34228 * 120.00085 * 153.18306 * 13 10 2 16 16 C 1.45200 * 116.99850 * 180.02562 * 15 13 10 17 17 C 1.50705 * 109.47025 * 179.97438 * 16 15 13 18 18 O 1.21279 * 119.99956 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99870 * 180.02562 * 17 16 15 20 20 C 1.46500 * 119.99728 * 179.97438 * 19 17 16 21 21 C 1.50696 * 109.47228 * 179.97438 * 20 19 17 22 22 H 1.08006 * 119.99816 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00591 * 179.97438 * 21 20 19 24 24 N 1.31521 * 119.99507 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00431 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47033 * 60.00106 * 25 23 21 27 27 H 1.48494 * 109.47026 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46948 * 300.00345 * 25 23 21 29 29 H 1.08991 * 109.47358 * 174.63560 * 1 2 3 30 30 H 1.08997 * 109.47244 * 294.63938 * 1 2 3 31 31 H 1.09007 * 109.46795 * 54.63416 * 1 2 3 32 32 H 1.07993 * 120.00458 * 0.02562 * 5 4 2 33 33 H 1.07996 * 120.00478 * 180.27913 * 6 5 4 34 34 H 1.07996 * 120.00299 * 179.83567 * 7 6 5 35 35 H 1.08003 * 119.99993 * 180.02562 * 8 7 6 36 36 H 1.07996 * 120.00347 * 179.97438 * 9 8 7 37 37 H 1.09003 * 109.47643 * 57.20830 * 11 10 2 38 38 H 1.08999 * 109.47313 * 177.20876 * 11 10 2 39 39 H 1.09001 * 109.46860 * 297.20658 * 11 10 2 40 40 H 0.96697 * 113.99784 * 291.38175 * 12 10 2 41 41 H 1.08998 * 109.47425 * 299.99533 * 16 15 13 42 42 H 1.09002 * 109.47273 * 60.00135 * 16 15 13 43 43 H 0.96999 * 120.00048 * 359.97438 * 19 17 16 44 44 H 1.08998 * 109.47079 * 300.00112 * 20 19 17 45 45 H 1.09008 * 109.46993 * 59.99839 * 20 19 17 46 46 H 0.96994 * 119.99550 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.5365 -1.9583 1.5589 6 6 2.0005 -2.6119 2.6851 7 6 2.9535 -2.0136 3.4881 8 6 3.4454 -0.7633 3.1626 9 6 2.9848 -0.1117 2.0339 10 6 2.0400 -0.7212 -1.2492 11 6 1.5853 0.0375 -2.4975 12 8 1.5134 -2.0493 -1.2808 13 6 3.5456 -0.7785 -1.2167 14 8 4.1695 0.0650 -0.6174 15 8 4.1935 -1.7665 -1.8537 16 6 5.6436 -1.7590 -1.7793 17 6 6.1920 -2.9343 -2.5469 18 8 5.4353 -3.7028 -3.1015 19 7 7.5235 -3.1319 -2.6161 20 6 8.0565 -4.2747 -3.3617 21 6 9.5615 -4.2669 -3.2847 22 1 10.0701 -3.4887 -2.7349 23 6 10.2893 -5.2537 -3.9152 24 7 9.6700 -6.2016 -4.5843 25 14 12.1548 -5.2444 -3.8191 26 1 12.5777 -5.3388 -2.3988 27 1 12.6951 -6.4027 -4.5750 28 1 12.6744 -3.9839 -4.4076 29 1 -0.3633 -1.0231 -0.0961 30 1 -0.3633 0.4284 0.9341 31 1 -0.3633 0.5949 -0.8381 32 1 0.7895 -2.4243 0.9335 33 1 1.6165 -3.5887 2.9393 34 1 3.3141 -2.5230 4.3695 35 1 4.1903 -0.2960 3.7897 36 1 3.3687 0.8652 1.7798 37 1 1.9455 1.0652 -2.4495 38 1 1.9900 -0.4481 -3.3855 39 1 0.4964 0.0361 -2.5471 40 1 1.8656 -2.6286 -0.5913 41 1 6.0248 -0.8333 -2.2105 42 1 5.9544 -1.8294 -0.7369 43 1 8.1287 -2.5174 -2.1722 44 1 7.6751 -5.2000 -2.9301 45 1 7.7460 -4.2050 -4.4043 46 1 10.1820 -6.8956 -5.0282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759546574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:32 Heat of formation + Delta-G solvation = -172.915563 kcal Electronic energy + Delta-G solvation = -29157.221473 eV Core-core repulsion = 25010.976806 eV Total energy + Delta-G solvation = -4146.244667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.30084 -40.82491 -40.13923 -38.54760 -37.60571 -36.20907 -34.83613 -34.43649 -32.23368 -31.78238 -30.89919 -29.67722 -28.55533 -26.52405 -24.83071 -24.01565 -23.39254 -22.40881 -21.68313 -20.94500 -19.69403 -19.10742 -18.24454 -17.98469 -17.74972 -17.47283 -17.02003 -16.96192 -16.45049 -16.19044 -16.13356 -15.43904 -15.17495 -14.95402 -14.65078 -14.43449 -14.21068 -14.14514 -13.99497 -13.77863 -13.59027 -13.54209 -13.37991 -13.24316 -12.97269 -12.88732 -12.73172 -12.69392 -12.40830 -12.25403 -12.21463 -11.94761 -11.72833 -11.54330 -11.35547 -11.16553 -10.90677 -10.82034 -9.95855 -9.83660 -9.65581 -8.30660 -6.47699 0.36768 0.47255 0.92456 1.14711 1.43490 1.46840 1.51706 1.55422 2.30499 2.49617 2.79383 3.02080 3.04377 3.37467 3.53026 3.59602 3.70006 3.94422 3.97848 3.98078 4.10316 4.14197 4.28619 4.33883 4.47526 4.59276 4.67843 4.69031 4.72144 4.94805 4.97857 5.03531 5.08054 5.14807 5.17564 5.19711 5.21927 5.37968 5.39312 5.55578 5.60664 5.61533 5.68051 5.80352 6.09110 6.21754 6.55476 6.60871 6.75378 7.18353 7.33106 8.81321 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.002481 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.603037 B =11285.004840 C =12073.708811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 H 0.101 0.899 4 C -0.104 4.104 5 C -0.133 4.133 6 C -0.128 4.128 7 C -0.130 4.130 8 C -0.132 4.132 9 C -0.110 4.110 10 C 0.161 3.839 11 C -0.146 4.146 12 O -0.540 6.540 13 C 0.432 3.568 14 O -0.504 6.504 15 O -0.341 6.341 16 C 0.058 3.942 17 C 0.499 3.501 18 O -0.581 6.581 19 N -0.698 5.698 20 C 0.267 3.733 21 C -0.559 4.559 22 H 0.086 0.914 23 C 0.005 3.995 24 N -0.930 5.930 25 Si 0.985 3.015 26 H -0.262 1.262 27 H -0.285 1.285 28 H -0.262 1.262 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.107 0.893 40 H 0.384 0.616 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.412 0.588 44 H -0.008 1.008 45 H -0.008 1.008 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.822 16.291 15.183 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.076 4.076 3 H 0.119 0.881 4 C -0.104 4.104 5 C -0.151 4.151 6 C -0.146 4.146 7 C -0.147 4.147 8 C -0.150 4.150 9 C -0.128 4.128 10 C 0.119 3.881 11 C -0.202 4.202 12 O -0.349 6.349 13 C 0.275 3.725 14 O -0.391 6.391 15 O -0.257 6.257 16 C -0.019 4.019 17 C 0.285 3.715 18 O -0.461 6.461 19 N -0.350 5.350 20 C 0.145 3.855 21 C -0.596 4.596 22 H 0.104 0.896 23 C -0.195 4.195 24 N -0.568 5.568 25 Si 0.808 3.192 26 H -0.186 1.186 27 H -0.211 1.211 28 H -0.186 1.186 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.141 0.859 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.236 0.764 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.248 0.752 44 H 0.010 0.990 45 H 0.010 0.990 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.428 16.052 14.347 28.338 hybrid contribution 1.815 -0.462 0.472 1.931 sum -16.613 15.590 14.819 27.178 Atomic orbital electron populations 1.21816 0.90760 1.03558 1.03191 1.20699 0.98596 0.99545 0.88783 0.88067 1.19978 0.97818 0.95648 0.96984 1.21398 1.00818 0.94841 0.98027 1.21478 0.97395 1.00701 0.94989 1.21495 0.97256 0.95536 1.00462 1.21438 1.00312 0.95812 0.97459 1.21248 0.96354 1.00530 0.94651 1.21389 0.81444 0.85999 0.99310 1.21963 1.05041 0.99782 0.93462 1.86606 1.68347 1.20989 1.58966 1.25451 0.93697 0.78502 0.74893 1.90635 1.69304 1.38893 1.40270 1.86645 1.20969 1.49673 1.68364 1.22736 0.78363 0.98046 1.02728 1.20666 0.83016 0.86560 0.81289 1.90695 1.58708 1.48546 1.48179 1.46043 1.05610 1.30068 1.53264 1.18621 0.93801 0.83231 0.89829 1.21575 0.90589 1.12674 1.34804 0.89619 1.26059 1.05138 0.94320 0.93969 1.70129 1.38524 1.14460 1.33705 0.85203 0.77122 0.78015 0.78867 1.18643 1.21097 1.18647 0.91423 0.91359 0.90248 0.84110 0.84216 0.84473 0.84832 0.85910 0.88686 0.91886 0.87421 0.76438 0.85895 0.86345 0.75188 0.99011 0.99006 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.25 71.98 0.59 -1.01 16 2 C -0.06 -0.93 1.68 -11.54 -0.02 -0.94 16 3 H 0.10 1.57 7.72 -2.39 -0.02 1.55 16 4 C -0.10 -1.94 3.88 -19.86 -0.08 -2.01 16 5 C -0.13 -2.30 7.39 22.27 0.16 -2.13 16 6 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 7 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 8 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 9 C -0.11 -2.17 8.47 22.27 0.19 -1.99 16 10 C 0.16 3.24 0.79 -11.54 -0.01 3.23 16 11 C -0.15 -2.37 8.46 71.98 0.61 -1.76 16 12 O -0.54 -11.91 11.18 -135.15 -1.51 -13.42 16 13 C 0.43 11.27 6.06 71.24 0.43 11.70 16 14 O -0.50 -13.49 14.42 21.94 0.32 -13.18 16 15 O -0.34 -10.89 9.48 -42.64 -0.40 -11.30 16 16 C 0.06 1.74 5.94 71.24 0.42 2.16 16 17 C 0.50 20.50 7.91 87.66 0.69 21.19 16 18 O -0.58 -29.89 16.50 15.77 0.26 -29.63 16 19 N -0.70 -29.27 5.55 -466.78 -2.59 -31.86 16 20 C 0.27 14.57 5.43 85.63 0.46 15.04 16 21 C -0.56 -30.02 9.28 25.60 0.24 -29.78 16 22 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 23 C 0.01 0.28 5.46 84.65 0.46 0.74 16 24 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 25 Si 0.99 41.87 29.54 68.60 2.03 43.90 16 26 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 27 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 28 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 29 H 0.07 0.85 6.43 -2.39 -0.02 0.84 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.70 6.84 -2.38 -0.02 0.68 16 32 H 0.14 2.04 5.75 -2.91 -0.02 2.02 16 33 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.12 2.38 7.87 -2.91 -0.02 2.36 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.11 1.30 6.76 -2.39 -0.02 1.28 16 40 H 0.38 7.96 6.22 -74.06 -0.46 7.50 16 41 H 0.12 3.05 8.13 -2.39 -0.02 3.03 16 42 H 0.12 3.02 8.13 -2.39 -0.02 3.00 16 43 H 0.41 13.92 8.32 -92.71 -0.77 13.15 16 44 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 45 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 46 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -75.19 383.39 3.00 -72.19 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -0.22 Total: 30.46 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 4.83 Total: 8.28 kcal Atomic # 7 Polarization: -85.01 SS G_CDS: -2.30 Total: -87.31 kcal Atomic # 8 Polarization: -66.18 SS G_CDS: -1.34 Total: -67.52 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -75.19 3.00 -72.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759546574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.725 kcal (2) G-P(sol) polarization free energy of solvation -75.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds