Wall clock time and date at job start Tue Mar 31 2020 19:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47659 * 2 1 4 4 C 1.50706 * 109.47184 * 240.00730 * 2 1 3 5 5 C 1.38237 * 119.99423 * 299.72933 * 4 2 1 6 6 C 1.38241 * 119.99758 * 179.78995 * 5 4 2 7 7 C 1.38233 * 119.99862 * 0.43007 * 6 5 4 8 8 C 1.38235 * 119.99934 * 359.82082 * 7 6 5 9 9 C 1.38229 * 120.00344 * 119.99717 * 4 2 1 10 10 C 1.52993 * 109.47602 * 120.00568 * 2 1 3 11 11 C 1.52997 * 109.47602 * 179.97438 * 10 2 1 12 12 O 1.42900 * 109.47166 * 59.99465 * 10 2 1 13 13 C 1.50706 * 109.47148 * 299.99920 * 10 2 1 14 14 O 1.20830 * 119.99594 * 334.99870 * 13 10 2 15 15 O 1.34222 * 120.00024 * 154.72154 * 13 10 2 16 16 C 1.45201 * 116.99867 * 180.02562 * 15 13 10 17 17 C 1.50695 * 109.47187 * 180.02562 * 16 15 13 18 18 O 1.21276 * 120.00334 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00023 * 179.97438 * 17 16 15 20 20 C 1.46508 * 119.99930 * 179.97438 * 19 17 16 21 21 C 1.50706 * 109.46844 * 180.02562 * 20 19 17 22 22 H 1.07995 * 120.00115 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99684 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00028 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46762 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47095 * 119.99895 * 25 23 21 28 28 H 1.48497 * 109.47399 * 240.00300 * 25 23 21 29 29 H 1.09002 * 109.46832 * 299.99451 * 1 2 3 30 30 H 1.08998 * 109.47326 * 59.99680 * 1 2 3 31 31 H 1.08999 * 109.46983 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.00519 * 359.97438 * 5 4 2 33 33 H 1.07994 * 119.99665 * 180.27379 * 6 5 4 34 34 H 1.08002 * 119.99782 * 179.83217 * 7 6 5 35 35 H 1.08004 * 119.99894 * 179.97438 * 8 7 6 36 36 H 1.08006 * 120.00188 * 359.97438 * 9 4 2 37 37 H 1.08995 * 109.47574 * 180.02562 * 11 10 2 38 38 H 1.09002 * 109.46832 * 299.99981 * 11 10 2 39 39 H 1.09001 * 109.47659 * 59.99432 * 11 10 2 40 40 H 0.96694 * 114.00569 * 300.00496 * 12 10 2 41 41 H 1.09009 * 109.46864 * 300.00062 * 16 15 13 42 42 H 1.09001 * 109.47271 * 60.00074 * 16 15 13 43 43 H 0.96997 * 120.00313 * 0.02562 * 19 17 16 44 44 H 1.08996 * 109.46986 * 300.00066 * 20 19 17 45 45 H 1.08997 * 109.47325 * 60.00538 * 20 19 17 46 46 H 0.97001 * 120.00090 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 1.7029 -2.0353 -1.4466 6 6 2.1601 -2.6857 -2.5776 7 6 2.9540 -2.0135 -3.4879 8 6 3.2876 -0.6900 -3.2693 9 6 2.8270 -0.0384 -2.1405 10 6 2.0401 -0.7213 1.2491 11 6 3.5700 -0.7219 1.2488 12 8 1.5637 -2.0686 1.2490 13 6 1.5378 -0.0110 2.4797 14 8 1.2504 1.1614 2.4255 15 8 1.4044 -0.6821 3.6344 16 6 0.9147 0.0658 4.7787 17 6 0.8316 -0.8454 5.9761 18 8 1.1529 -2.0104 5.8751 19 7 0.4001 -0.3655 7.1593 20 6 0.3187 -1.2515 8.3233 21 6 -0.1894 -0.4752 9.5109 22 1 -0.4275 0.5732 9.4089 23 6 -0.3504 -1.1036 10.7275 24 7 -0.0599 -2.3802 10.8518 25 14 -0.9796 -0.1413 12.1998 26 1 -1.2292 1.2670 11.8005 27 1 -2.2438 -0.7502 12.6855 28 1 0.0348 -0.1755 13.2838 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.0860 -2.5617 -0.7333 33 1 1.8991 -3.7196 -2.7485 34 1 3.3134 -2.5224 -4.3702 35 1 3.9082 -0.1649 -3.9804 36 1 3.0876 0.9957 -1.9697 37 1 3.9334 -1.2362 2.1384 38 1 3.9329 -1.2359 0.3587 39 1 3.9338 0.3056 1.2485 40 1 0.5998 -2.1450 1.2491 41 1 1.5974 0.8877 4.9947 42 1 -0.0750 0.4645 4.5556 43 1 0.1427 0.5662 7.2401 44 1 -0.3642 -2.0731 8.1075 45 1 1.3083 -1.6505 8.5461 46 1 -0.1728 -2.8222 11.7079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759546576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:39 Heat of formation + Delta-G solvation = -151.001208 kcal Electronic energy + Delta-G solvation = -28541.379226 eV Core-core repulsion = 24396.084837 eV Total energy + Delta-G solvation = -4145.294389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.34695 -39.85271 -38.79629 -37.67829 -36.49456 -34.27215 -34.01359 -32.43086 -31.34851 -31.04102 -29.71479 -29.25081 -26.79907 -24.81842 -24.14174 -22.83967 -22.59027 -21.48914 -20.12904 -19.93734 -18.75404 -17.56625 -17.02833 -16.90938 -16.76036 -16.31043 -15.67729 -15.40602 -15.17291 -15.03754 -14.90968 -14.48707 -14.32004 -13.89708 -13.67681 -13.45828 -13.07079 -12.91561 -12.87262 -12.78957 -12.66215 -12.38542 -12.27907 -12.03435 -11.93044 -11.84052 -11.77564 -11.35797 -11.16892 -11.00780 -10.96121 -10.87635 -10.74571 -10.36460 -10.08276 -9.44169 -9.19844 -9.15729 -8.97829 -8.80552 -8.00941 -6.21378 -4.28896 1.04592 1.16025 1.89017 2.26169 3.15223 3.21058 3.28240 3.31179 3.50685 3.71997 3.84557 4.11321 4.29488 4.36469 4.47990 4.61526 4.67398 4.74259 4.88872 4.95910 5.05219 5.05914 5.14549 5.18075 5.23873 5.28625 5.30781 5.34526 5.41104 5.50517 5.60286 5.71492 5.77684 5.81908 5.84937 6.19319 6.22612 6.27628 6.35810 6.73548 7.06472 7.20851 7.28666 7.43941 7.53354 7.61185 7.90049 8.47690 8.69382 8.94360 9.37635 10.88755 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.035161 B = 0.001903 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.145694 B =14713.519852 C =15021.416513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.067 4.067 3 H 0.101 0.899 4 C -0.075 4.075 5 C -0.097 4.097 6 C -0.122 4.122 7 C -0.122 4.122 8 C -0.124 4.124 9 C -0.114 4.114 10 C 0.161 3.839 11 C -0.142 4.142 12 O -0.526 6.526 13 C 0.436 3.564 14 O -0.503 6.503 15 O -0.314 6.314 16 C 0.044 3.956 17 C 0.499 3.501 18 O -0.531 6.531 19 N -0.707 5.707 20 C 0.251 3.749 21 C -0.545 4.545 22 H 0.065 0.935 23 C 0.064 3.936 24 N -0.884 5.884 25 Si 0.905 3.095 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.381 0.619 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.392 0.608 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 5.442 -28.522 29.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.085 4.085 3 H 0.119 0.881 4 C -0.075 4.075 5 C -0.115 4.115 6 C -0.140 4.140 7 C -0.140 4.140 8 C -0.142 4.142 9 C -0.132 4.132 10 C 0.119 3.881 11 C -0.199 4.199 12 O -0.333 6.333 13 C 0.278 3.722 14 O -0.391 6.391 15 O -0.228 6.228 16 C -0.034 4.034 17 C 0.282 3.718 18 O -0.408 6.408 19 N -0.357 5.357 20 C 0.131 3.869 21 C -0.584 4.584 22 H 0.083 0.917 23 C -0.140 4.140 24 N -0.521 5.521 25 Si 0.733 3.267 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.230 0.770 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.225 0.775 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.035 4.635 -28.397 29.210 hybrid contribution -1.094 1.255 1.013 1.949 sum 3.941 5.890 -27.384 28.286 Atomic orbital electron populations 1.21987 0.93430 1.02414 1.03621 1.20666 0.97059 1.00147 0.90675 0.88104 1.19521 0.98274 0.94425 0.95241 1.21274 0.99568 0.93895 0.96769 1.21195 0.98259 1.00002 0.94579 1.21170 0.98557 0.94877 0.99441 1.21097 1.00440 0.95023 0.97650 1.21059 0.97794 0.99858 0.94483 1.21089 0.97048 0.82702 0.87295 1.21826 0.89525 1.03491 1.05063 1.86698 1.27361 1.23215 1.96040 1.24814 0.74964 0.86697 0.85741 1.90668 1.45854 1.17128 1.85444 1.86664 1.75869 1.42467 1.17808 1.22932 1.01512 0.94622 0.84299 1.19859 0.79568 0.88438 0.83974 1.90725 1.48477 1.17249 1.84319 1.46372 1.64633 1.14764 1.09953 1.19185 0.97879 0.89541 0.80323 1.21245 1.46116 0.96700 0.94300 0.91715 1.24958 0.95082 0.94994 0.98982 1.69983 1.47017 1.09621 1.25511 0.86333 0.78540 0.79866 0.82008 1.19619 1.20754 1.20757 0.91348 0.91145 0.92149 0.85009 0.86102 0.86343 0.86216 0.86151 0.90259 0.89694 0.90405 0.76987 0.88534 0.88560 0.77471 0.95240 0.95235 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 8.42 37.16 0.31 -0.94 16 2 C -0.07 -0.57 1.70 -91.77 -0.16 -0.73 16 3 H 0.10 0.88 7.61 -51.93 -0.39 0.48 16 4 C -0.07 -0.62 3.52 -104.62 -0.37 -0.99 16 5 C -0.10 -0.81 8.31 -39.58 -0.33 -1.14 16 6 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 7 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 8 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 9 C -0.11 -0.88 9.67 -39.59 -0.38 -1.26 16 10 C 0.16 1.67 0.79 -91.77 -0.07 1.59 16 11 C -0.14 -1.38 8.58 37.16 0.32 -1.06 16 12 O -0.53 -5.51 10.04 -49.21 -0.49 -6.01 16 13 C 0.44 5.65 6.00 36.01 0.22 5.86 16 14 O -0.50 -6.95 14.76 -18.75 -0.28 -7.23 16 15 O -0.31 -4.90 9.50 -48.33 -0.46 -5.36 16 16 C 0.04 0.66 5.94 36.00 0.21 0.87 16 17 C 0.50 9.95 7.91 -10.99 -0.09 9.86 16 18 O -0.53 -12.99 16.50 -14.10 -0.23 -13.22 16 19 N -0.71 -14.52 5.55 -61.47 -0.34 -14.86 16 20 C 0.25 6.54 5.43 -5.19 -0.03 6.51 16 21 C -0.55 -14.55 9.28 -34.44 -0.32 -14.87 16 22 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.88 -25.76 13.29 55.43 0.74 -25.02 16 25 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H 0.07 0.64 6.46 -51.93 -0.34 0.30 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.40 6.04 -51.93 -0.31 0.09 16 32 H 0.13 1.03 5.50 -52.48 -0.29 0.74 16 33 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 36 H 0.12 0.76 7.95 -52.48 -0.42 0.34 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.78 7.22 -51.93 -0.37 0.40 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.38 3.03 7.00 45.56 0.32 3.35 16 41 H 0.10 1.26 8.14 -51.92 -0.42 0.84 16 42 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 43 H 0.39 6.75 8.32 -40.82 -0.34 6.42 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -34.00 384.77 -8.17 -42.17 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.91 Total: 6.74 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.97 Total: 1.42 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.40 Total: -39.88 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.46 Total: -31.82 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.00 -8.17 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759546576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.833 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds