Wall clock time and date at job start Tue Mar 31 2020 19:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47659 * 2 1 4 4 C 1.50706 * 109.47184 * 240.00730 * 2 1 3 5 5 C 1.38237 * 119.99423 * 299.72933 * 4 2 1 6 6 C 1.38241 * 119.99758 * 179.78995 * 5 4 2 7 7 C 1.38233 * 119.99862 * 0.43007 * 6 5 4 8 8 C 1.38235 * 119.99934 * 359.82082 * 7 6 5 9 9 C 1.38229 * 120.00344 * 119.99717 * 4 2 1 10 10 C 1.52993 * 109.47602 * 120.00568 * 2 1 3 11 11 C 1.52997 * 109.47602 * 179.97438 * 10 2 1 12 12 O 1.42900 * 109.47166 * 59.99465 * 10 2 1 13 13 C 1.50706 * 109.47148 * 299.99920 * 10 2 1 14 14 O 1.20830 * 119.99594 * 334.99870 * 13 10 2 15 15 O 1.34222 * 120.00024 * 154.72154 * 13 10 2 16 16 C 1.45201 * 116.99867 * 180.02562 * 15 13 10 17 17 C 1.50695 * 109.47187 * 180.02562 * 16 15 13 18 18 O 1.21276 * 120.00334 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00023 * 179.97438 * 17 16 15 20 20 C 1.46508 * 119.99930 * 179.97438 * 19 17 16 21 21 C 1.50706 * 109.46844 * 180.02562 * 20 19 17 22 22 H 1.07995 * 120.00115 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99684 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00028 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46762 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47095 * 119.99895 * 25 23 21 28 28 H 1.48497 * 109.47399 * 240.00300 * 25 23 21 29 29 H 1.09002 * 109.46832 * 299.99451 * 1 2 3 30 30 H 1.08998 * 109.47326 * 59.99680 * 1 2 3 31 31 H 1.08999 * 109.46983 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.00519 * 359.97438 * 5 4 2 33 33 H 1.07994 * 119.99665 * 180.27379 * 6 5 4 34 34 H 1.08002 * 119.99782 * 179.83217 * 7 6 5 35 35 H 1.08004 * 119.99894 * 179.97438 * 8 7 6 36 36 H 1.08006 * 120.00188 * 359.97438 * 9 4 2 37 37 H 1.08995 * 109.47574 * 180.02562 * 11 10 2 38 38 H 1.09002 * 109.46832 * 299.99981 * 11 10 2 39 39 H 1.09001 * 109.47659 * 59.99432 * 11 10 2 40 40 H 0.96694 * 114.00569 * 300.00496 * 12 10 2 41 41 H 1.09009 * 109.46864 * 300.00062 * 16 15 13 42 42 H 1.09001 * 109.47271 * 60.00074 * 16 15 13 43 43 H 0.96997 * 120.00313 * 0.02562 * 19 17 16 44 44 H 1.08996 * 109.46986 * 300.00066 * 20 19 17 45 45 H 1.08997 * 109.47325 * 60.00538 * 20 19 17 46 46 H 0.97001 * 120.00090 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 1.7029 -2.0353 -1.4466 6 6 2.1601 -2.6857 -2.5776 7 6 2.9540 -2.0135 -3.4879 8 6 3.2876 -0.6900 -3.2693 9 6 2.8270 -0.0384 -2.1405 10 6 2.0401 -0.7213 1.2491 11 6 3.5700 -0.7219 1.2488 12 8 1.5637 -2.0686 1.2490 13 6 1.5378 -0.0110 2.4797 14 8 1.2504 1.1614 2.4255 15 8 1.4044 -0.6821 3.6344 16 6 0.9147 0.0658 4.7787 17 6 0.8316 -0.8454 5.9761 18 8 1.1529 -2.0104 5.8751 19 7 0.4001 -0.3655 7.1593 20 6 0.3187 -1.2515 8.3233 21 6 -0.1894 -0.4752 9.5109 22 1 -0.4275 0.5732 9.4089 23 6 -0.3504 -1.1036 10.7275 24 7 -0.0599 -2.3802 10.8518 25 14 -0.9796 -0.1413 12.1998 26 1 -1.2292 1.2670 11.8005 27 1 -2.2438 -0.7502 12.6855 28 1 0.0348 -0.1755 13.2838 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.0860 -2.5617 -0.7333 33 1 1.8991 -3.7196 -2.7485 34 1 3.3134 -2.5224 -4.3702 35 1 3.9082 -0.1649 -3.9804 36 1 3.0876 0.9957 -1.9697 37 1 3.9334 -1.2362 2.1384 38 1 3.9329 -1.2359 0.3587 39 1 3.9338 0.3056 1.2485 40 1 0.5998 -2.1450 1.2491 41 1 1.5974 0.8877 4.9947 42 1 -0.0750 0.4645 4.5556 43 1 0.1427 0.5662 7.2401 44 1 -0.3642 -2.0731 8.1075 45 1 1.3083 -1.6505 8.5461 46 1 -0.1728 -2.8222 11.7079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759546576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:38 Heat of formation + Delta-G solvation = -173.003482 kcal Electronic energy + Delta-G solvation = -28542.333316 eV Core-core repulsion = 24396.084837 eV Total energy + Delta-G solvation = -4146.248479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.30641 -40.82053 -40.19881 -38.51108 -37.62258 -36.19953 -34.72610 -34.42950 -32.09122 -31.64251 -30.78937 -30.31218 -28.59003 -25.72674 -25.00987 -24.38266 -23.39016 -22.32613 -21.66688 -20.88707 -19.73820 -19.15198 -18.16618 -17.99569 -17.60701 -17.44289 -17.03319 -16.96383 -16.30471 -16.16027 -16.06462 -15.58819 -15.28129 -14.91950 -14.78401 -14.33358 -14.21779 -14.16625 -13.98186 -13.71872 -13.61524 -13.52942 -13.44394 -13.17164 -13.01305 -12.92190 -12.76666 -12.74938 -12.46221 -12.23296 -11.97506 -11.93189 -11.78588 -11.66080 -11.47976 -11.03001 -10.84116 -10.82982 -9.94674 -9.71957 -9.55977 -8.30616 -6.47354 0.46244 0.59937 0.87473 1.16769 1.44164 1.44555 1.53740 1.58272 2.30958 2.50188 2.93145 2.98133 3.04724 3.31013 3.50804 3.69600 3.72798 3.83424 4.00018 4.01817 4.09100 4.22862 4.33622 4.37869 4.42864 4.60513 4.64506 4.69750 4.72946 4.85487 4.97522 5.03552 5.06650 5.12750 5.15161 5.20521 5.22588 5.28397 5.40703 5.61622 5.65711 5.72454 5.77526 5.81004 6.18936 6.28083 6.57854 6.62126 6.76807 7.19436 7.34591 8.81696 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.035161 B = 0.001903 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.145694 B =14713.519852 C =15021.416513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.057 4.057 3 H 0.102 0.898 4 C -0.081 4.081 5 C -0.110 4.110 6 C -0.135 4.135 7 C -0.128 4.128 8 C -0.130 4.130 9 C -0.121 4.121 10 C 0.164 3.836 11 C -0.142 4.142 12 O -0.536 6.536 13 C 0.440 3.560 14 O -0.510 6.510 15 O -0.337 6.337 16 C 0.055 3.945 17 C 0.499 3.501 18 O -0.582 6.582 19 N -0.699 5.699 20 C 0.266 3.734 21 C -0.557 4.557 22 H 0.087 0.913 23 C 0.004 3.996 24 N -0.930 5.930 25 Si 0.986 3.014 26 H -0.253 1.253 27 H -0.279 1.279 28 H -0.280 1.280 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.390 0.610 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.412 0.588 44 H -0.007 1.007 45 H -0.008 1.008 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.977 7.759 -29.656 30.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.076 4.076 3 H 0.120 0.880 4 C -0.081 4.081 5 C -0.128 4.128 6 C -0.153 4.153 7 C -0.146 4.146 8 C -0.148 4.148 9 C -0.139 4.139 10 C 0.122 3.878 11 C -0.199 4.199 12 O -0.345 6.345 13 C 0.282 3.718 14 O -0.398 6.398 15 O -0.252 6.252 16 C -0.021 4.021 17 C 0.284 3.716 18 O -0.462 6.462 19 N -0.350 5.350 20 C 0.144 3.856 21 C -0.594 4.594 22 H 0.105 0.895 23 C -0.196 4.196 24 N -0.568 5.568 25 Si 0.809 3.191 26 H -0.176 1.176 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.241 0.759 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.249 0.751 44 H 0.010 0.990 45 H 0.010 0.990 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.734 7.009 -29.567 30.753 hybrid contribution -0.969 0.483 1.262 1.663 sum 3.764 7.491 -28.305 29.521 Atomic orbital electron populations 1.21981 0.93075 1.03040 1.03258 1.20585 0.97328 0.99842 0.89839 0.88027 1.19503 0.98876 0.94483 0.95287 1.21382 1.00012 0.94174 0.97196 1.21422 0.98486 1.00714 0.94630 1.21456 0.98159 0.95140 0.99881 1.21385 1.00381 0.95157 0.97831 1.21279 0.97541 1.00579 0.94521 1.21228 0.97306 0.82606 0.86687 1.21854 0.89164 1.04273 1.04566 1.86687 1.28379 1.23437 1.95960 1.25341 0.74397 0.86693 0.85368 1.90658 1.46250 1.17470 1.85410 1.86667 1.76381 1.43567 1.18622 1.22798 1.03944 0.93140 0.82256 1.20690 0.77604 0.88377 0.84886 1.90701 1.50413 1.19899 1.85222 1.46044 1.64854 1.15073 1.09057 1.18633 0.94774 0.89641 0.82571 1.21644 1.45719 0.97676 0.94399 0.89544 1.26063 0.95052 0.95929 1.02553 1.70140 1.48360 1.11781 1.26560 0.85093 0.77624 0.78968 0.77415 1.17605 1.20485 1.20538 0.92692 0.90393 0.91132 0.85013 0.85081 0.84619 0.84338 0.84888 0.91779 0.89093 0.89033 0.75930 0.85897 0.85637 0.75138 0.98952 0.99039 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 8.42 71.98 0.61 -1.69 16 2 C -0.06 -0.91 1.70 -11.54 -0.02 -0.93 16 3 H 0.10 1.59 7.61 -2.39 -0.02 1.58 16 4 C -0.08 -1.24 3.52 -19.86 -0.07 -1.31 16 5 C -0.11 -1.73 8.31 22.27 0.18 -1.55 16 6 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 7 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 8 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 9 C -0.12 -1.65 9.67 22.27 0.22 -1.43 16 10 C 0.16 3.25 0.79 -11.54 -0.01 3.24 16 11 C -0.14 -2.64 8.58 71.98 0.62 -2.02 16 12 O -0.54 -11.03 10.04 -135.61 -1.36 -12.39 16 13 C 0.44 10.86 6.00 71.24 0.43 11.29 16 14 O -0.51 -13.16 14.76 21.95 0.32 -12.83 16 15 O -0.34 -10.28 9.50 -42.64 -0.41 -10.68 16 16 C 0.06 1.57 5.94 71.23 0.42 2.00 16 17 C 0.50 19.99 7.91 87.66 0.69 20.69 16 18 O -0.58 -29.54 16.50 15.78 0.26 -29.28 16 19 N -0.70 -28.76 5.55 -466.78 -2.59 -31.35 16 20 C 0.27 14.38 5.43 85.63 0.46 14.84 16 21 C -0.56 -29.71 9.28 25.60 0.24 -29.48 16 22 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 23 C 0.00 0.21 5.46 84.65 0.46 0.67 16 24 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 25 Si 0.99 41.77 29.54 68.60 2.03 43.80 16 26 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 27 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 29 H 0.05 0.96 6.46 -2.39 -0.02 0.95 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 0.87 6.04 -2.39 -0.01 0.85 16 32 H 0.13 1.98 5.50 -2.91 -0.02 1.96 16 33 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 35 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 36 H 0.13 1.39 7.95 -2.91 -0.02 1.37 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.09 1.58 7.22 -2.39 -0.02 1.56 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.39 6.07 7.00 -74.06 -0.52 5.55 16 41 H 0.12 2.90 8.14 -2.38 -0.02 2.88 16 42 H 0.13 2.88 8.13 -2.39 -0.02 2.86 16 43 H 0.41 13.58 8.32 -92.71 -0.77 12.81 16 44 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 45 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 46 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -75.27 384.77 3.17 -72.10 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -0.27 Total: 26.11 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 4.90 Total: 9.78 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -2.30 Total: -86.60 kcal Atomic # 8 Polarization: -64.00 SS G_CDS: -1.18 Total: -65.18 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -75.27 3.17 -72.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759546576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.904 kcal (2) G-P(sol) polarization free energy of solvation -75.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds