Wall clock time and date at job start Tue Mar 31 2020 18:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47730 * 2 1 4 4 N 1.46492 * 109.47290 * 179.97438 * 3 2 1 5 5 C 1.34779 * 120.00023 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00049 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.00135 * 180.02562 * 5 4 3 8 8 H 1.09003 * 109.46797 * 305.00385 * 7 5 4 9 9 C 1.52993 * 109.47048 * 64.99913 * 7 5 4 10 10 O 1.45196 * 109.47009 * 185.00143 * 7 5 4 11 11 C 1.34229 * 116.99846 * 150.00104 * 10 7 5 12 12 O 1.20828 * 120.00012 * 359.97438 * 11 10 7 13 13 C 1.50706 * 119.99945 * 180.02562 * 11 10 7 14 14 C 1.50699 * 109.46820 * 179.97438 * 13 11 10 15 15 C 1.38328 * 119.96240 * 269.71853 * 14 13 11 16 16 C 1.38284 * 120.13608 * 179.76805 * 15 14 13 17 17 C 1.38123 * 120.06728 * 0.51342 * 16 15 14 18 18 C 1.38855 * 119.93228 * 359.74416 * 17 16 15 19 19 O 1.35746 * 120.06972 * 179.97438 * 18 17 16 20 20 C 1.34823 * 117.00239 * 354.48415 * 19 18 17 21 21 H 1.08008 * 120.00030 * 5.05643 * 20 19 18 22 22 C 1.38655 * 120.00564 * 185.06185 * 20 19 18 23 23 N 1.31561 * 119.99975 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00260 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47463 * 59.99832 * 24 22 20 26 26 H 1.48504 * 109.47306 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47138 * 299.99697 * 24 22 20 28 28 C 1.38082 * 119.96778 * 90.00199 * 14 13 11 29 29 H 1.08998 * 109.47993 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46964 * 300.00214 * 1 2 3 31 31 H 1.09003 * 109.47331 * 59.99348 * 1 2 3 32 32 H 1.09011 * 109.46822 * 240.00098 * 2 1 3 33 33 H 1.08998 * 109.46892 * 120.00482 * 2 1 3 34 34 H 1.09007 * 109.46403 * 60.00115 * 3 2 1 35 35 H 1.09003 * 109.47246 * 300.00704 * 3 2 1 36 36 H 0.97001 * 120.00118 * 0.02562 * 4 3 2 37 37 H 1.09003 * 109.47664 * 300.00200 * 9 7 5 38 38 H 1.09002 * 109.46982 * 180.02562 * 9 7 5 39 39 H 1.08999 * 109.47177 * 60.00099 * 9 7 5 40 40 H 1.09004 * 109.46615 * 299.99627 * 13 11 10 41 41 H 1.09001 * 109.47082 * 59.99786 * 13 11 10 42 42 H 1.07997 * 119.93001 * 0.02562 * 15 14 13 43 43 H 1.07995 * 119.96524 * 180.25730 * 16 15 14 44 44 H 1.08002 * 120.03464 * 179.76309 * 17 16 15 45 45 H 0.96995 * 120.00089 * 180.02562 * 23 22 20 46 46 H 1.07999 * 120.03275 * 359.94731 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1790 2.6095 0.0012 6 8 3.5727 3.6598 0.0018 7 6 5.6861 2.6094 0.0013 8 1 6.0493 2.0194 0.8428 9 6 6.1960 2.0004 -1.3063 10 8 6.1701 3.9730 0.1214 11 6 7.3498 4.1489 0.7372 12 8 7.9575 3.1950 1.1623 13 6 7.9156 5.5362 0.8995 14 6 9.2377 5.4585 1.6185 15 6 9.2790 5.5363 2.9990 16 6 10.4898 5.4605 3.6627 17 6 11.6630 5.3175 2.9479 18 6 11.6254 5.2444 1.5618 19 8 12.7767 5.1043 0.8566 20 6 13.9307 5.1573 1.5518 21 1 13.9093 5.2234 2.6296 22 6 15.1450 5.1269 0.8832 23 7 15.1712 5.0459 -0.4297 24 14 16.7438 5.1996 1.8465 25 1 16.8160 4.0421 2.7740 26 1 17.8915 5.1513 0.9053 27 1 16.7951 6.4624 2.6260 28 6 10.4072 5.3155 0.8983 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9562 0.8901 35 1 1.6767 1.9563 -0.8899 36 1 3.9900 0.6022 0.0006 37 1 5.8327 0.9767 -1.3965 38 1 7.2861 1.9999 -1.3060 39 1 5.8328 2.5903 -2.1478 40 1 8.0616 5.9862 -0.0826 41 1 7.2224 6.1458 1.4791 42 1 8.3634 5.6523 3.5597 43 1 10.5184 5.5174 4.7408 44 1 12.6087 5.2622 3.4667 45 1 16.0207 5.0243 -0.8974 46 1 10.3746 5.2585 -0.1797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760626770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:38 Heat of formation + Delta-G solvation = -158.092854 kcal Electronic energy + Delta-G solvation = -27621.748555 eV Core-core repulsion = 23476.146650 eV Total energy + Delta-G solvation = -4145.601906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.99000 -40.91045 -40.49115 -38.48892 -37.53355 -36.78014 -34.37754 -34.19200 -33.60429 -32.43902 -30.92686 -28.83738 -27.49562 -27.28282 -25.47715 -23.45499 -23.13321 -22.60334 -21.88706 -21.30948 -19.53670 -19.00576 -18.89524 -18.48291 -17.48914 -17.25790 -16.84584 -16.71220 -16.54562 -16.30097 -16.10309 -15.68523 -15.48506 -15.12828 -15.05597 -14.61229 -14.26876 -14.15955 -14.00526 -13.86277 -13.61390 -13.46061 -13.39229 -13.01308 -12.95629 -12.94254 -12.72638 -12.50193 -12.43494 -12.24967 -12.13844 -12.04957 -11.98546 -11.75801 -11.65431 -11.21853 -10.93896 -10.79261 -10.24121 -9.70995 -9.00809 -8.46148 -6.14891 0.39750 0.72734 1.10736 1.30834 1.35325 1.36229 1.46739 1.51677 2.18316 2.23941 2.84065 3.15957 3.39069 3.46047 3.65281 3.74226 3.82739 3.89092 3.95535 4.07341 4.07981 4.28498 4.34043 4.36471 4.51590 4.57397 4.57958 4.59384 4.65925 4.72242 4.73600 4.85147 5.00530 5.02371 5.12187 5.15924 5.21414 5.24277 5.25637 5.30600 5.43901 5.61511 5.69518 5.72163 6.02468 6.19608 6.32746 6.66744 6.98161 7.02881 7.78667 8.76831 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025076 B = 0.001851 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.317596 B =15125.602891 C =15576.658080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.116 3.884 4 N -0.709 5.709 5 C 0.521 3.479 6 O -0.562 6.562 7 C 0.062 3.938 8 H 0.116 0.884 9 C -0.161 4.161 10 O -0.339 6.339 11 C 0.468 3.532 12 O -0.524 6.524 13 C -0.063 4.063 14 C -0.037 4.037 15 C -0.177 4.177 16 C -0.072 4.072 17 C -0.241 4.241 18 C 0.112 3.888 19 O -0.233 6.233 20 C -0.415 4.415 21 H 0.101 0.899 22 C -0.023 4.023 23 N -0.920 5.920 24 Si 1.019 2.981 25 H -0.258 1.258 26 H -0.271 1.271 27 H -0.256 1.256 28 C -0.186 4.186 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.419 0.581 37 H 0.113 0.887 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.133 0.867 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.120 0.880 45 H 0.272 0.728 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.375 -9.083 2.414 27.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.006 4.006 4 N -0.364 5.364 5 C 0.306 3.694 6 O -0.440 6.440 7 C 0.004 3.996 8 H 0.133 0.867 9 C -0.219 4.219 10 O -0.256 6.256 11 C 0.312 3.688 12 O -0.412 6.412 13 C -0.100 4.100 14 C -0.037 4.037 15 C -0.195 4.195 16 C -0.090 4.090 17 C -0.260 4.260 18 C 0.062 3.938 19 O -0.140 6.140 20 C -0.491 4.491 21 H 0.119 0.881 22 C -0.220 4.220 23 N -0.559 5.559 24 Si 0.838 3.162 25 H -0.183 1.183 26 H -0.196 1.196 27 H -0.181 1.181 28 C -0.206 4.206 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.256 0.744 37 H 0.132 0.868 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.151 0.849 41 H 0.168 0.832 42 H 0.166 0.834 43 H 0.165 0.835 44 H 0.138 0.862 45 H 0.081 0.919 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -26.488 -8.697 2.120 27.959 hybrid contribution 1.360 -0.439 0.087 1.432 sum -25.127 -9.136 2.207 26.828 Atomic orbital electron populations 1.21696 0.94159 1.02821 1.02251 1.21703 0.97209 0.93718 1.03901 1.21550 0.78030 0.99155 1.01913 1.45794 1.08054 1.07981 1.74536 1.20237 0.88773 0.84389 0.75995 1.90727 1.70521 1.32771 1.50000 1.22648 0.91391 0.82484 1.03057 0.86664 1.22174 1.02499 1.02882 0.94301 1.86626 1.36646 1.31218 1.71068 1.24087 0.78347 0.93092 0.73235 1.90703 1.59615 1.43904 1.46934 1.20379 0.93817 0.90559 1.05207 1.19069 0.92105 0.98515 0.93999 1.20994 0.98468 1.06994 0.93089 1.21137 0.91218 0.96208 1.00417 1.21341 1.00210 1.11168 0.93254 1.19843 0.87674 0.94351 0.91938 1.83934 1.12315 1.80928 1.36773 1.21790 0.81709 1.53196 0.92452 0.88133 1.26595 1.02482 0.95850 0.97078 1.70182 1.28131 1.48689 1.08851 0.84645 0.74317 0.79910 0.77311 1.18274 1.19591 1.18068 1.20208 0.90328 1.10590 0.99426 0.91141 0.92584 0.92442 0.89996 0.90290 0.92317 0.91985 0.74398 0.86845 0.91709 0.90866 0.84940 0.83209 0.83437 0.83451 0.86192 0.91863 0.87161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 71.98 0.71 -0.13 16 2 C -0.13 -0.71 6.05 30.59 0.18 -0.53 16 3 C 0.12 1.34 5.67 86.38 0.49 1.83 16 4 N -0.71 -8.91 5.52 -463.06 -2.55 -11.46 16 5 C 0.52 10.97 7.18 87.66 0.63 11.60 16 6 O -0.56 -16.83 16.51 15.73 0.26 -16.57 16 7 C 0.06 1.32 2.97 29.85 0.09 1.41 16 8 H 0.12 2.33 7.16 -2.39 -0.02 2.31 16 9 C -0.16 -2.68 9.50 71.98 0.68 -2.00 16 10 O -0.34 -9.07 9.42 -45.07 -0.42 -9.50 16 11 C 0.47 13.55 7.92 71.24 0.56 14.12 16 12 O -0.52 -18.43 15.25 21.96 0.33 -18.10 16 13 C -0.06 -1.60 5.94 29.10 0.17 -1.43 16 14 C -0.04 -1.26 4.37 -19.88 -0.09 -1.35 16 15 C -0.18 -5.69 9.70 22.30 0.22 -5.47 16 16 C -0.07 -2.53 10.04 22.25 0.22 -2.31 16 17 C -0.24 -10.78 9.17 22.39 0.21 -10.57 16 18 C 0.11 5.76 6.65 22.58 0.15 5.91 16 19 O -0.23 -14.36 9.76 -22.62 -0.22 -14.58 16 20 C -0.42 -24.64 9.49 67.92 0.64 -24.00 16 21 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 22 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 23 N -0.92 -57.14 13.67 21.61 0.30 -56.84 16 24 Si 1.02 43.31 29.55 68.60 2.03 45.34 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 28 C -0.19 -8.20 9.65 22.39 0.22 -7.98 16 29 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.42 2.55 8.26 -92.71 -0.77 1.78 16 37 H 0.11 1.04 7.93 -2.39 -0.02 1.02 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.13 2.93 8.09 -2.38 -0.02 2.91 16 41 H 0.15 2.76 8.08 -2.39 -0.02 2.74 16 42 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 43 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 44 H 0.12 5.41 5.64 -2.91 -0.02 5.40 16 45 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 46 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -84.06 396.82 5.51 -78.54 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.23 Total: 24.90 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 5.56 Total: -21.73 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -2.26 Total: -68.30 kcal Atomic # 8 Polarization: -58.70 SS G_CDS: -0.05 Total: -58.75 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -84.06 5.51 -78.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760626770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.550 kcal (2) G-P(sol) polarization free energy of solvation -84.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds