Wall clock time and date at job start Tue Mar 31 2020 19:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42909 * 113.99766 * 2 1 4 4 C 1.52995 * 109.46782 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47142 * 184.99915 * 4 3 2 6 6 N 1.46497 * 109.47750 * 305.00168 * 4 3 2 7 7 C 1.34776 * 119.99618 * 300.00496 * 6 4 3 8 8 O 1.21282 * 120.00566 * 359.97438 * 7 6 4 9 9 C 1.50705 * 120.00064 * 179.97438 * 7 6 4 10 10 C 1.50694 * 109.47282 * 179.97438 * 9 7 6 11 11 C 1.37643 * 120.13084 * 264.99978 * 10 9 7 12 12 C 1.38613 * 120.24986 * 179.97438 * 11 10 9 13 13 C 1.38648 * 120.49974 * 0.02562 * 12 11 10 14 14 C 1.37594 * 120.25189 * 0.02562 * 13 12 11 15 15 C 1.40700 * 120.12525 * 84.72542 * 10 9 7 16 16 C 1.41391 * 120.24473 * 0.02562 * 15 10 9 17 17 H 1.08001 * 120.00071 * 333.85597 * 16 15 10 18 18 C 1.39946 * 120.00185 * 153.86933 * 16 15 10 19 19 N 1.30826 * 119.99833 * 343.72338 * 18 16 15 20 20 Si 1.86797 * 120.00320 * 163.72470 * 18 16 15 21 21 H 1.48501 * 109.47007 * 89.99726 * 20 18 16 22 22 H 1.48500 * 109.47294 * 209.99764 * 20 18 16 23 23 H 1.48499 * 109.46833 * 329.99699 * 20 18 16 24 24 C 1.50705 * 109.47344 * 65.00156 * 4 3 2 25 25 O 1.20832 * 119.99685 * 24.99453 * 24 4 3 26 26 O 1.34226 * 120.00433 * 204.99883 * 24 4 3 27 27 C 1.45200 * 117.00198 * 179.97438 * 26 24 4 28 28 H 1.08999 * 109.47082 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47305 * 300.00449 * 1 2 3 30 30 H 1.09002 * 109.47351 * 60.00020 * 1 2 3 31 31 H 1.09001 * 109.46763 * 299.99585 * 3 2 1 32 32 H 1.09001 * 109.46763 * 59.99914 * 3 2 1 33 33 H 1.09000 * 109.46846 * 60.00360 * 5 4 3 34 34 H 1.09002 * 109.47041 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.47050 * 300.00516 * 5 4 3 36 36 H 0.97004 * 120.00503 * 119.99548 * 6 4 3 37 37 H 1.09000 * 109.46794 * 300.00095 * 9 7 6 38 38 H 1.09002 * 109.47102 * 59.99368 * 9 7 6 39 39 H 1.08008 * 119.87027 * 0.02562 * 11 10 9 40 40 H 1.07997 * 119.74362 * 179.97438 * 12 11 10 41 41 H 1.08011 * 119.87506 * 179.97438 * 13 12 11 42 42 H 1.08008 * 120.13059 * 179.97438 * 14 13 12 43 43 H 0.96994 * 120.00168 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.46763 * 60.00455 * 27 26 24 45 45 H 1.09000 * 109.47272 * 179.97438 * 27 26 24 46 46 H 1.08999 * 109.47346 * 300.00204 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1572 2.5770 0.1263 6 7 3.9593 0.3566 1.1323 7 6 3.6620 0.7334 2.3917 8 8 3.0439 1.7583 2.5882 9 6 4.0975 -0.1187 3.5559 10 6 3.6442 0.5201 4.8433 11 6 4.4988 1.3380 5.5471 12 6 4.0842 1.9273 6.7313 13 6 2.8071 1.7004 7.2208 14 6 1.9363 0.8855 6.5345 15 6 2.3439 0.2873 5.3276 16 6 1.4556 -0.5469 4.6105 17 1 1.5701 -0.6667 3.5433 18 6 0.4278 -1.2171 5.2835 19 7 0.4683 -1.3375 6.5856 20 14 -1.0019 -1.9397 4.3228 21 1 -0.6818 -3.3370 3.9349 22 1 -2.2227 -1.9281 5.1682 23 1 -1.2379 -1.1286 3.1015 24 6 3.9893 0.5463 -1.2868 25 8 3.3012 0.6271 -2.2767 26 8 5.1580 -0.1123 -1.3338 27 6 5.5312 -0.7026 -2.6068 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 3.8290 3.0388 1.0575 34 1 5.2439 2.4910 0.1263 35 1 3.8419 3.1932 -0.7157 36 1 4.4538 -0.4630 0.9753 37 1 3.6542 -1.1104 3.4661 38 1 5.1841 -0.2052 3.5564 39 1 5.4958 1.5220 5.1747 40 1 4.7616 2.5673 7.2771 41 1 2.4947 2.1643 8.1448 42 1 0.9419 0.7097 6.9179 43 1 -0.2438 -1.8023 7.0521 44 1 5.6053 0.0797 -3.3623 45 1 6.4944 -1.2030 -2.5069 46 1 4.7744 -1.4273 -2.9072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777004450.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:56 Heat of formation + Delta-G solvation = -143.851627 kcal Electronic energy + Delta-G solvation = -30457.103068 eV Core-core repulsion = 26312.118708 eV Total energy + Delta-G solvation = -4144.984360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.05247 -39.39000 -37.81265 -37.14747 -36.55691 -34.99603 -33.57744 -32.06803 -30.74011 -29.39897 -28.15833 -27.49090 -26.68973 -25.21773 -24.93267 -23.93926 -21.05213 -20.85303 -19.83820 -19.27250 -18.24448 -17.26347 -17.05952 -16.68527 -16.23224 -15.78256 -15.58659 -15.33964 -15.17511 -14.65618 -14.42979 -14.19853 -13.61225 -13.59005 -13.30175 -13.22904 -12.97145 -12.64033 -12.55560 -12.39475 -12.17479 -11.99680 -11.73945 -11.65112 -11.53025 -11.20909 -11.09797 -10.99932 -10.96806 -10.92254 -10.65935 -10.56960 -10.36051 -9.54062 -9.44384 -9.32683 -9.11675 -8.97431 -8.81827 -7.27206 -7.24858 -6.69664 -4.29437 1.96170 2.42446 2.81631 2.99108 3.08673 3.13372 3.29888 3.30785 3.46855 3.83265 3.97060 4.48394 4.70233 4.85255 4.89139 4.97380 5.02361 5.29426 5.40608 5.43172 5.55607 5.61056 5.63022 5.67272 5.80883 5.89929 5.91117 6.05889 6.10850 6.16472 6.21067 6.32504 6.48490 6.54952 6.62131 6.84453 7.13846 7.27323 7.33879 7.46472 7.52864 7.68519 7.88660 7.98209 8.12716 8.17474 8.36128 8.69853 8.83013 8.96633 9.06104 10.24465 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011610 B = 0.004543 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.170905 B = 6161.826172 C = 7697.300839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.382 6.382 3 C 0.056 3.944 4 C 0.202 3.798 5 C -0.164 4.164 6 N -0.727 5.727 7 C 0.527 3.473 8 O -0.519 6.519 9 C -0.069 4.069 10 C -0.180 4.180 11 C -0.080 4.080 12 C -0.240 4.240 13 C -0.107 4.107 14 C -0.160 4.160 15 C 0.130 3.870 16 C -0.454 4.454 17 H 0.076 0.924 18 C 0.078 3.922 19 N -0.796 5.796 20 Si 0.899 3.101 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.261 1.261 24 C 0.473 3.527 25 O -0.493 6.493 26 O -0.355 6.355 27 C 0.035 3.965 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.405 0.595 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.279 0.721 44 H 0.062 0.938 45 H 0.103 0.897 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 0.597 -14.050 15.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.301 6.301 3 C -0.022 4.022 4 C 0.114 3.886 5 C -0.222 4.222 6 N -0.384 5.384 7 C 0.315 3.685 8 O -0.393 6.393 9 C -0.109 4.109 10 C -0.182 4.182 11 C -0.099 4.099 12 C -0.260 4.260 13 C -0.126 4.126 14 C -0.179 4.179 15 C 0.128 3.872 16 C -0.483 4.483 17 H 0.095 0.905 18 C -0.140 4.140 19 N -0.422 5.422 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.185 1.185 24 C 0.314 3.686 25 O -0.378 6.378 26 O -0.271 6.271 27 C -0.059 4.059 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.240 0.760 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.121 0.879 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.552 1.075 -14.039 15.135 hybrid contribution -0.697 -0.686 -0.729 1.219 sum 4.855 0.389 -14.767 15.550 Atomic orbital electron populations 1.22705 0.80662 1.02670 0.99988 1.87815 1.19979 1.26775 1.95505 1.22910 0.90012 0.86434 1.02827 1.20153 0.94180 0.92675 0.81638 1.22223 1.01433 0.92974 1.05536 1.46047 1.60453 1.27238 1.04625 1.21214 0.78068 0.86389 0.82796 1.90600 1.38605 1.25336 1.84727 1.20254 1.00245 0.99470 0.90888 1.19035 0.95189 1.06791 0.97201 1.20294 0.97083 0.97163 0.95318 1.20288 0.97368 1.08569 0.99746 1.20668 0.94529 0.99077 0.98305 1.21293 0.99547 0.99221 0.97858 1.17326 0.89670 0.89118 0.91119 1.19497 1.09992 1.23269 0.95574 0.90545 1.25863 0.98423 0.94917 0.94755 1.69823 1.31186 1.32474 1.08676 0.86454 0.80641 0.79738 0.80771 1.19554 1.20244 1.18464 1.23601 0.78727 0.75551 0.90729 1.90665 1.54312 1.56138 1.36728 1.86498 1.38248 1.64455 1.37930 1.23294 1.01364 0.98090 0.83102 0.89848 0.93410 0.94455 0.92058 0.88958 0.87684 0.90843 0.91213 0.76002 0.88428 0.90469 0.89779 0.89770 0.89708 0.86609 0.91057 0.91947 0.87909 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 11.01 101.05 1.11 1.66 16 2 O -0.38 -6.62 10.22 -35.23 -0.36 -6.98 16 3 C 0.06 0.90 4.17 37.15 0.15 1.05 16 4 C 0.20 2.93 0.79 -132.97 -0.11 2.83 16 5 C -0.16 -2.10 8.38 37.16 0.31 -1.79 16 6 N -0.73 -10.99 4.80 -48.68 -0.23 -11.22 16 7 C 0.53 9.79 6.86 -10.98 -0.08 9.72 16 8 O -0.52 -11.25 12.30 5.56 0.07 -11.18 16 9 C -0.07 -1.32 5.18 -29.04 -0.15 -1.47 16 10 C -0.18 -4.23 4.43 -103.91 -0.46 -4.69 16 11 C -0.08 -1.81 9.66 -39.66 -0.38 -2.19 16 12 C -0.24 -5.52 10.05 -39.29 -0.39 -5.91 16 13 C -0.11 -2.59 10.02 -39.67 -0.40 -2.99 16 14 C -0.16 -4.23 8.68 -38.87 -0.34 -4.57 16 15 C 0.13 3.42 5.56 -106.82 -0.59 2.82 16 16 C -0.45 -11.78 8.14 -37.74 -0.31 -12.08 16 17 H 0.08 1.96 6.67 -52.49 -0.35 1.61 16 18 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 19 N -0.80 -20.48 10.95 55.55 0.61 -19.87 16 20 Si 0.90 18.85 29.59 -169.99 -5.03 13.82 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 24 C 0.47 6.56 6.51 36.01 0.23 6.80 16 25 O -0.49 -7.75 15.74 -18.76 -0.30 -8.04 16 26 O -0.36 -4.13 9.78 -39.25 -0.38 -4.51 16 27 C 0.04 0.29 10.56 101.05 1.07 1.36 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.90 7.69 -51.93 -0.40 0.50 16 32 H 0.09 1.65 6.32 -51.93 -0.33 1.33 16 33 H 0.10 1.57 6.17 -51.93 -0.32 1.25 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.40 5.29 7.91 -40.82 -0.32 4.97 16 37 H 0.10 1.89 7.08 -51.93 -0.37 1.52 16 38 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 39 H 0.08 1.66 8.06 -52.48 -0.42 1.24 16 40 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 41 H 0.08 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.12 3.16 6.21 -52.48 -0.33 2.83 16 43 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 44 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -31.21 383.56 -6.88 -38.09 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -6.62 Total: 11.72 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -0.42 Total: -7.62 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.37 Total: -31.09 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.97 Total: -30.71 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.21 -6.88 -38.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777004450.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.761 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds