Wall clock time and date at job start Tue Mar 31 2020 19:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47362 * 2 1 4 4 O 1.42902 * 109.47302 * 120.00049 * 2 1 3 5 5 C 1.42898 * 113.99874 * 149.99721 * 4 2 1 6 6 H 1.09002 * 109.47259 * 30.00319 * 5 4 2 7 7 C 1.50699 * 109.46964 * 150.00106 * 5 4 2 8 8 O 1.20829 * 120.00015 * 4.99996 * 7 5 4 9 9 O 1.34233 * 120.00100 * 184.99677 * 7 5 4 10 10 C 1.45194 * 116.99969 * 180.02562 * 9 7 5 11 11 C 1.50699 * 109.47064 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00296 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99958 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99874 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47099 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00187 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00100 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99874 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00248 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47319 * 89.99733 * 19 17 15 21 21 H 1.48499 * 109.47352 * 210.00268 * 19 17 15 22 22 H 1.48505 * 109.46920 * 329.99697 * 19 17 15 23 23 C 1.50703 * 109.47171 * 270.00168 * 5 4 2 24 24 C 1.38236 * 119.99787 * 324.72807 * 23 5 4 25 25 C 1.38241 * 119.99636 * 179.81278 * 24 23 5 26 26 C 1.38234 * 120.00115 * 0.39672 * 25 24 23 27 27 C 1.38240 * 119.99714 * 359.85290 * 26 25 24 28 28 C 1.38228 * 120.00011 * 145.00451 * 23 5 4 29 29 H 1.09003 * 109.46945 * 300.00086 * 1 2 3 30 30 H 1.08997 * 109.47191 * 59.99795 * 1 2 3 31 31 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46945 * 239.99914 * 2 1 3 33 33 H 1.09003 * 109.47161 * 60.00046 * 3 2 1 34 34 H 1.08996 * 109.47272 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46784 * 300.00357 * 3 2 1 36 36 H 1.09004 * 109.47237 * 300.00603 * 10 9 7 37 37 H 1.09001 * 109.47376 * 60.00327 * 10 9 7 38 38 H 0.96994 * 119.99980 * 359.97438 * 13 11 10 39 39 H 1.09004 * 109.47428 * 300.00229 * 14 13 11 40 40 H 1.09001 * 109.47298 * 60.00297 * 14 13 11 41 41 H 0.97002 * 119.99910 * 179.97438 * 18 17 15 42 42 H 1.07996 * 120.00216 * 359.97438 * 24 23 5 43 43 H 1.08000 * 119.99857 * 180.22806 * 25 24 23 44 44 H 1.07998 * 120.00030 * 179.84064 * 26 25 24 45 45 H 1.08003 * 119.99655 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.00508 * 359.97379 * 28 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3245 0.9885 6 1 3.8530 -0.7830 0.2467 7 6 4.0097 -1.3467 2.2990 8 8 3.4767 -0.9376 3.3032 9 8 5.2644 -1.8211 2.3507 10 6 5.9194 -1.8127 3.6464 11 6 7.3101 -2.3769 3.5099 12 8 7.7100 -2.7491 2.4271 13 7 8.1095 -2.4680 4.5912 14 6 9.4612 -3.0170 4.4586 15 6 10.1407 -3.0093 5.8037 16 1 9.6182 -2.6327 6.6706 17 6 11.4300 -3.4821 5.9275 18 7 12.0666 -3.9403 4.8718 19 14 12.2721 -3.4732 7.5949 20 1 11.9996 -4.7548 8.2939 21 1 13.7366 -3.3123 7.4091 22 1 11.7494 -2.3454 8.4074 23 6 3.0389 -2.7373 0.5157 24 6 1.9499 -3.4536 0.9760 25 6 1.7395 -4.7482 0.5393 26 6 2.6227 -5.3294 -0.3513 27 6 3.7145 -4.6148 -0.8076 28 6 3.9228 -3.3189 -0.3738 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 5.9776 -0.7894 4.0175 37 1 5.3473 -2.4211 4.3468 38 1 7.7899 -2.1700 5.4572 39 1 9.4031 -4.0402 4.0872 40 1 10.0336 -2.4084 3.7586 41 1 12.9738 -4.2726 4.9588 42 1 1.2620 -3.0009 1.6747 43 1 0.8867 -5.3066 0.8961 44 1 2.4597 -6.3417 -0.6905 45 1 4.4048 -5.0690 -1.5031 46 1 4.7759 -2.7607 -0.7304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796408840.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:08 Heat of formation + Delta-G solvation = -145.857204 kcal Electronic energy + Delta-G solvation = -28438.150499 eV Core-core repulsion = 24293.079171 eV Total energy + Delta-G solvation = -4145.071328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93970 -39.58059 -38.67437 -38.26171 -36.30397 -34.25687 -33.69646 -32.41939 -31.67535 -31.02616 -29.41996 -27.80512 -27.35538 -26.34653 -22.86095 -22.83783 -22.33205 -21.59440 -20.83515 -19.94969 -18.01199 -17.77758 -17.39136 -17.04432 -16.58052 -16.26023 -15.69214 -15.53975 -15.13627 -14.93992 -14.83146 -14.51463 -14.45344 -14.16789 -13.55840 -13.34390 -13.27769 -13.01848 -12.81910 -12.75127 -12.61457 -12.55444 -12.25126 -12.01163 -11.98902 -11.77562 -11.44282 -11.29280 -11.05352 -11.02132 -10.92839 -10.71249 -10.64890 -10.35263 -10.07333 -9.45010 -9.19783 -9.07408 -9.00304 -8.79062 -7.99865 -6.20488 -4.27822 1.02494 1.24998 2.03201 2.07749 3.16646 3.22706 3.28745 3.30998 3.38228 3.61831 4.02955 4.26070 4.32261 4.46846 4.56355 4.68687 4.71422 4.82564 4.84519 4.88049 4.98481 5.12545 5.15652 5.22645 5.24583 5.27491 5.32616 5.33545 5.43292 5.45990 5.48467 5.72066 5.81259 5.86633 5.87481 6.25749 6.26734 6.28535 6.34448 6.73074 6.79021 7.21384 7.29729 7.44714 7.57872 7.66191 7.90989 8.48851 8.70087 8.95173 9.38546 10.89626 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002314 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.141556 B =12099.234800 C =13125.246641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 C -0.179 4.179 4 O -0.346 6.346 5 C 0.149 3.851 6 H 0.107 0.893 7 C 0.466 3.534 8 O -0.486 6.486 9 O -0.323 6.323 10 C 0.049 3.951 11 C 0.501 3.499 12 O -0.533 6.533 13 N -0.706 5.706 14 C 0.252 3.748 15 C -0.545 4.545 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.123 4.123 24 C -0.088 4.088 25 C -0.127 4.127 26 C -0.109 4.109 27 C -0.120 4.120 28 C -0.088 4.088 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.393 0.607 39 H 0.029 0.971 40 H 0.030 0.970 41 H 0.267 0.733 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.943 5.053 -12.140 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.022 3.978 3 C -0.236 4.236 4 O -0.265 6.265 5 C 0.090 3.910 6 H 0.125 0.875 7 C 0.307 3.693 8 O -0.372 6.372 9 O -0.238 6.238 10 C -0.028 4.028 11 C 0.283 3.717 12 O -0.410 6.410 13 N -0.357 5.357 14 C 0.131 3.869 15 C -0.583 4.583 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.124 4.124 24 C -0.106 4.106 25 C -0.145 4.145 26 C -0.127 4.127 27 C -0.138 4.138 28 C -0.106 4.106 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.226 0.774 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -23.678 4.819 -12.481 27.197 hybrid contribution 0.583 0.145 1.319 1.450 sum -23.095 4.965 -11.162 26.127 Atomic orbital electron populations 1.21836 0.92914 1.02967 1.02725 1.22271 0.95493 0.92363 0.87689 1.22354 1.01733 0.96546 1.02979 1.88046 1.33218 1.69216 1.36020 1.20027 0.86574 0.92191 0.92252 0.87506 1.23156 0.80605 0.74657 0.90924 1.90683 1.67868 1.42601 1.36070 1.86525 1.27026 1.75252 1.34978 1.22904 0.93077 1.03580 0.83265 1.19845 0.85656 0.80438 0.85713 1.90704 1.75065 1.48732 1.26531 1.46362 1.17193 1.62836 1.09271 1.19175 0.75480 0.94499 0.97705 1.21207 0.99450 1.43879 0.93792 0.91762 1.24955 0.97006 0.94705 0.97339 1.69975 1.12666 1.40543 1.29010 0.86387 0.78636 0.78540 0.83191 1.20420 1.20975 1.19713 1.19857 0.97632 0.94922 0.99984 1.21013 0.96876 0.94029 0.98654 1.21147 0.99893 0.95175 0.98268 1.21259 0.94670 0.99771 0.97008 1.21160 0.97815 0.94345 1.00523 1.21071 0.97875 0.95696 0.95929 0.91544 0.90996 0.91778 0.91536 0.91396 0.92357 0.91284 0.88412 0.88459 0.77412 0.95261 0.95245 0.92375 0.85366 0.85868 0.85915 0.85521 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.56 37.16 0.36 -0.62 16 2 C 0.08 0.64 3.12 -26.73 -0.08 0.56 16 3 C -0.18 -1.31 9.52 37.16 0.35 -0.95 16 4 O -0.35 -3.91 8.33 -55.14 -0.46 -4.37 16 5 C 0.15 1.74 2.63 -29.03 -0.08 1.66 16 6 H 0.11 1.02 7.53 -51.93 -0.39 0.63 16 7 C 0.47 6.88 7.27 36.01 0.26 7.14 16 8 O -0.49 -8.11 16.26 -25.47 -0.41 -8.53 16 9 O -0.32 -5.24 9.74 -45.91 -0.45 -5.69 16 10 C 0.05 0.77 5.94 36.01 0.21 0.98 16 11 C 0.50 10.08 7.91 -10.98 -0.09 9.99 16 12 O -0.53 -12.93 16.50 -14.10 -0.23 -13.16 16 13 N -0.71 -14.65 5.55 -61.47 -0.34 -14.99 16 14 C 0.25 6.57 5.43 -5.20 -0.03 6.54 16 15 C -0.55 -14.59 9.28 -34.44 -0.32 -14.91 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 18 N -0.88 -25.79 13.29 55.43 0.74 -25.05 16 19 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C -0.12 -1.42 4.92 -104.62 -0.51 -1.93 16 24 C -0.09 -0.96 9.35 -39.58 -0.37 -1.34 16 25 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 26 C -0.11 -1.03 10.05 -39.58 -0.40 -1.43 16 27 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 28 C -0.09 -0.97 9.68 -39.59 -0.38 -1.36 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.44 7.96 -51.93 -0.41 0.03 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 1.33 8.13 -51.93 -0.42 0.90 16 37 H 0.10 1.36 8.13 -51.93 -0.42 0.94 16 38 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.13 1.39 7.64 -52.49 -0.40 0.99 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 46 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 LS Contribution 401.38 15.07 6.05 6.05 Total: -1.00 -34.21 401.38 -9.08 -43.28 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.98 Total: 4.06 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -1.97 Total: 2.74 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.40 Total: -40.04 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -1.55 Total: -31.75 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.21 -9.08 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796408840.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.573 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds