Wall clock time and date at job start Tue Mar 31 2020 19:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47362 * 2 1 4 4 O 1.42902 * 109.47302 * 120.00049 * 2 1 3 5 5 C 1.42898 * 113.99874 * 149.99721 * 4 2 1 6 6 H 1.09002 * 109.47259 * 30.00319 * 5 4 2 7 7 C 1.50699 * 109.46964 * 150.00106 * 5 4 2 8 8 O 1.20829 * 120.00015 * 4.99996 * 7 5 4 9 9 O 1.34233 * 120.00100 * 184.99677 * 7 5 4 10 10 C 1.45194 * 116.99969 * 180.02562 * 9 7 5 11 11 C 1.50699 * 109.47064 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00296 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99958 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99874 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47099 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00187 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00100 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99874 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00248 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47319 * 89.99733 * 19 17 15 21 21 H 1.48499 * 109.47352 * 210.00268 * 19 17 15 22 22 H 1.48505 * 109.46920 * 329.99697 * 19 17 15 23 23 C 1.50703 * 109.47171 * 270.00168 * 5 4 2 24 24 C 1.38236 * 119.99787 * 324.72807 * 23 5 4 25 25 C 1.38241 * 119.99636 * 179.81278 * 24 23 5 26 26 C 1.38234 * 120.00115 * 0.39672 * 25 24 23 27 27 C 1.38240 * 119.99714 * 359.85290 * 26 25 24 28 28 C 1.38228 * 120.00011 * 145.00451 * 23 5 4 29 29 H 1.09003 * 109.46945 * 300.00086 * 1 2 3 30 30 H 1.08997 * 109.47191 * 59.99795 * 1 2 3 31 31 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46945 * 239.99914 * 2 1 3 33 33 H 1.09003 * 109.47161 * 60.00046 * 3 2 1 34 34 H 1.08996 * 109.47272 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46784 * 300.00357 * 3 2 1 36 36 H 1.09004 * 109.47237 * 300.00603 * 10 9 7 37 37 H 1.09001 * 109.47376 * 60.00327 * 10 9 7 38 38 H 0.96994 * 119.99980 * 359.97438 * 13 11 10 39 39 H 1.09004 * 109.47428 * 300.00229 * 14 13 11 40 40 H 1.09001 * 109.47298 * 60.00297 * 14 13 11 41 41 H 0.97002 * 119.99910 * 179.97438 * 18 17 15 42 42 H 1.07996 * 120.00216 * 359.97438 * 24 23 5 43 43 H 1.08000 * 119.99857 * 180.22806 * 25 24 23 44 44 H 1.07998 * 120.00030 * 179.84064 * 26 25 24 45 45 H 1.08003 * 119.99655 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.00508 * 359.97379 * 28 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3245 0.9885 6 1 3.8530 -0.7830 0.2467 7 6 4.0097 -1.3467 2.2990 8 8 3.4767 -0.9376 3.3032 9 8 5.2644 -1.8211 2.3507 10 6 5.9194 -1.8127 3.6464 11 6 7.3101 -2.3769 3.5099 12 8 7.7100 -2.7491 2.4271 13 7 8.1095 -2.4680 4.5912 14 6 9.4612 -3.0170 4.4586 15 6 10.1407 -3.0093 5.8037 16 1 9.6182 -2.6327 6.6706 17 6 11.4300 -3.4821 5.9275 18 7 12.0666 -3.9403 4.8718 19 14 12.2721 -3.4732 7.5949 20 1 11.9996 -4.7548 8.2939 21 1 13.7366 -3.3123 7.4091 22 1 11.7494 -2.3454 8.4074 23 6 3.0389 -2.7373 0.5157 24 6 1.9499 -3.4536 0.9760 25 6 1.7395 -4.7482 0.5393 26 6 2.6227 -5.3294 -0.3513 27 6 3.7145 -4.6148 -0.8076 28 6 3.9228 -3.3189 -0.3738 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 5.9776 -0.7894 4.0175 37 1 5.3473 -2.4211 4.3468 38 1 7.7899 -2.1700 5.4572 39 1 9.4031 -4.0402 4.0872 40 1 10.0336 -2.4084 3.7586 41 1 12.9738 -4.2726 4.9588 42 1 1.2620 -3.0009 1.6747 43 1 0.8867 -5.3066 0.8961 44 1 2.4597 -6.3417 -0.6905 45 1 4.4048 -5.0690 -1.5031 46 1 4.7759 -2.7607 -0.7304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796408840.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:07 Heat of formation + Delta-G solvation = -165.852730 kcal Electronic energy + Delta-G solvation = -28439.017571 eV Core-core repulsion = 24293.079171 eV Total energy + Delta-G solvation = -4145.938399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06045 -40.71893 -40.09282 -39.07842 -37.56427 -36.19366 -34.45080 -34.39136 -32.44110 -31.79785 -30.93201 -29.01771 -28.21138 -27.66980 -24.69568 -23.62470 -23.36926 -22.40225 -21.74789 -21.66935 -19.37584 -19.01278 -18.35190 -18.27639 -17.80237 -17.46186 -17.17943 -16.90724 -16.59703 -16.06916 -15.98843 -15.69779 -15.50043 -15.11007 -14.71237 -14.55640 -14.31055 -14.22908 -13.99162 -13.85724 -13.66097 -13.59621 -13.47225 -13.13175 -13.04502 -12.94620 -12.72489 -12.62194 -12.23772 -12.19739 -12.02300 -11.98872 -11.80703 -11.60738 -11.50537 -10.95830 -10.82374 -10.82305 -9.94360 -9.86420 -9.81533 -8.30148 -6.46575 0.20604 0.45908 0.93334 0.93814 1.44091 1.45731 1.52675 1.57123 2.24118 2.42985 2.66604 2.94765 3.05088 3.42539 3.52883 3.70318 3.70768 3.96801 3.99664 4.00386 4.04106 4.11240 4.16367 4.25196 4.27532 4.56786 4.60370 4.73619 4.80881 4.86704 4.93144 4.95899 5.03630 5.11108 5.11683 5.21340 5.26705 5.31735 5.40577 5.50197 5.50523 5.57794 5.61734 5.81402 5.98683 6.03201 6.47101 6.61968 6.75943 7.19139 7.33740 8.81894 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002314 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.141556 B =12099.234800 C =13125.246641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 C -0.177 4.177 4 O -0.363 6.363 5 C 0.154 3.846 6 H 0.125 0.875 7 C 0.468 3.532 8 O -0.508 6.508 9 O -0.338 6.338 10 C 0.059 3.941 11 C 0.502 3.498 12 O -0.579 6.579 13 N -0.699 5.699 14 C 0.267 3.733 15 C -0.557 4.557 16 H 0.085 0.915 17 C 0.005 3.995 18 N -0.929 5.929 19 Si 0.984 3.016 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.256 1.256 23 C -0.133 4.133 24 C -0.100 4.100 25 C -0.129 4.129 26 C -0.111 4.111 27 C -0.131 4.131 28 C -0.103 4.103 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.412 0.588 39 H -0.007 1.007 40 H -0.006 1.006 41 H 0.269 0.731 42 H 0.125 0.875 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.141 0.859 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.352 5.372 -11.297 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 C -0.235 4.235 4 O -0.282 6.282 5 C 0.095 3.905 6 H 0.142 0.858 7 C 0.310 3.690 8 O -0.395 6.395 9 O -0.253 6.253 10 C -0.018 4.018 11 C 0.287 3.713 12 O -0.459 6.459 13 N -0.350 5.350 14 C 0.145 3.855 15 C -0.595 4.595 16 H 0.103 0.897 17 C -0.195 4.195 18 N -0.568 5.568 19 Si 0.808 3.192 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.180 1.180 23 C -0.134 4.134 24 C -0.118 4.118 25 C -0.147 4.147 26 C -0.129 4.129 27 C -0.149 4.149 28 C -0.121 4.121 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.248 0.752 39 H 0.011 0.989 40 H 0.012 0.988 41 H 0.078 0.922 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.165 0.835 45 H 0.159 0.841 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -25.139 5.164 -11.618 28.171 hybrid contribution 0.954 0.035 0.967 1.359 sum -24.185 5.199 -10.651 26.933 Atomic orbital electron populations 1.21846 0.91801 1.03008 1.03449 1.22531 0.96364 0.92543 0.87069 1.22354 1.01386 0.96164 1.03548 1.88032 1.32872 1.69527 1.37776 1.20044 0.86850 0.92920 0.90711 0.85782 1.23777 0.79813 0.73543 0.91863 1.90662 1.68078 1.43689 1.37093 1.86525 1.27991 1.75669 1.35148 1.22788 0.90094 1.05128 0.83791 1.20559 0.87090 0.79111 0.84506 1.90682 1.76386 1.50547 1.28279 1.46043 1.15574 1.62692 1.10712 1.18632 0.77822 0.92002 0.97037 1.21603 0.99896 1.43687 0.94286 0.89673 1.26043 0.97869 0.93980 1.01618 1.70131 1.13198 1.41627 1.31802 0.85159 0.77063 0.79170 0.77848 1.19658 1.20966 1.17980 1.19883 0.98111 0.94871 1.00516 1.21114 0.96920 0.94762 0.98981 1.21446 1.00549 0.94779 0.97898 1.21592 0.94054 1.00798 0.96447 1.21450 0.98460 0.94162 1.00779 1.21227 0.98091 0.96391 0.96405 0.92249 0.88798 0.92079 0.90576 0.92372 0.92903 0.89153 0.85652 0.86160 0.75163 0.98944 0.98822 0.92192 0.85714 0.83693 0.83487 0.84121 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.56 71.98 0.69 -1.04 16 2 C 0.07 1.08 3.12 30.59 0.10 1.18 16 3 C -0.18 -2.39 9.52 71.98 0.69 -1.71 16 4 O -0.36 -8.01 8.33 -129.95 -1.08 -9.09 16 5 C 0.15 3.53 2.63 29.10 0.08 3.60 16 6 H 0.12 2.31 7.53 -2.39 -0.02 2.29 16 7 C 0.47 13.56 7.27 71.24 0.52 14.08 16 8 O -0.51 -16.56 16.26 28.37 0.46 -16.10 16 9 O -0.34 -10.82 9.74 -45.09 -0.44 -11.26 16 10 C 0.06 1.77 5.94 71.24 0.42 2.19 16 11 C 0.50 20.30 7.91 87.66 0.69 20.99 16 12 O -0.58 -28.94 16.50 15.77 0.26 -28.68 16 13 N -0.70 -29.03 5.55 -466.78 -2.59 -31.62 16 14 C 0.27 14.42 5.43 85.63 0.46 14.89 16 15 C -0.56 -29.79 9.28 25.60 0.24 -29.56 16 16 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 17 C 0.00 0.26 5.46 84.65 0.46 0.72 16 18 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 19 Si 0.98 41.89 29.54 68.60 2.03 43.91 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 23 C -0.13 -3.00 4.92 -19.87 -0.10 -3.10 16 24 C -0.10 -2.13 9.35 22.27 0.21 -1.92 16 25 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 26 C -0.11 -1.92 10.05 22.27 0.22 -1.69 16 27 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 28 C -0.10 -2.25 9.68 22.27 0.22 -2.04 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 1.00 7.79 -2.39 -0.02 0.98 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.76 7.96 -2.39 -0.02 0.74 16 35 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.13 3.14 8.13 -2.38 -0.02 3.12 16 37 H 0.12 3.13 8.13 -2.39 -0.02 3.11 16 38 H 0.41 13.87 8.32 -92.71 -0.77 13.10 16 39 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 40 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 42 H 0.12 2.68 7.64 -2.91 -0.02 2.66 16 43 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 44 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 45 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -75.67 401.38 4.47 -71.20 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.21 Total: 24.51 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 5.34 Total: 12.20 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -2.30 Total: -86.68 kcal Atomic # 8 Polarization: -64.34 SS G_CDS: -0.80 Total: -65.14 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -75.67 4.47 -71.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796408840.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.653 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds