Wall clock time and date at job start Tue Mar 31 2020 19:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.50956 * 2 1 4 4 C 1.53096 * 109.50701 * 120.09086 * 2 1 3 5 5 N 1.47023 * 109.25833 * 176.82398 * 4 2 1 6 6 C 1.46894 * 111.00083 * 177.60675 * 5 4 2 7 7 C 1.53001 * 109.47472 * 170.00161 * 6 5 4 8 8 O 1.45197 * 109.47083 * 64.99582 * 7 6 5 9 9 C 1.34754 * 117.00078 * 180.02562 * 8 7 6 10 10 O 1.21510 * 120.00157 * 0.02562 * 9 8 7 11 11 C 1.47395 * 120.00207 * 180.02562 * 9 8 7 12 12 C 1.39726 * 120.20155 * 0.02562 * 11 9 8 13 13 C 1.37810 * 119.91401 * 179.97438 * 12 11 9 14 14 C 1.38586 * 120.33164 * 359.97438 * 13 12 11 15 15 C 1.38026 * 120.41348 * 359.97438 * 14 13 12 16 16 C 1.38835 * 120.07552 * 0.02903 * 15 14 13 17 17 O 1.35508 * 120.16178 * 179.97438 * 16 15 14 18 18 C 1.34814 * 117.00212 * 354.39906 * 17 16 15 19 19 H 1.07996 * 119.99983 * 5.06297 * 18 17 16 20 20 C 1.38704 * 119.99925 * 185.06776 * 18 17 16 21 21 N 1.31516 * 120.00081 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47301 * 59.99660 * 22 20 18 24 24 H 1.48498 * 109.47315 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47314 * 299.99827 * 22 20 18 26 26 C 1.47014 * 110.75174 * 301.38491 * 5 4 2 27 27 C 1.53100 * 109.25975 * 58.61497 * 26 5 4 28 28 O 1.43012 * 109.25670 * 303.14990 * 27 26 5 29 29 H 1.09000 * 109.46690 * 299.91344 * 1 2 3 30 30 H 1.09008 * 109.47157 * 59.90919 * 1 2 3 31 31 H 1.08997 * 109.47116 * 179.91068 * 1 2 3 32 32 H 1.09003 * 109.50574 * 56.89236 * 4 2 1 33 33 H 1.08998 * 109.54207 * 296.77861 * 4 2 1 34 34 H 1.09005 * 109.47176 * 49.99952 * 6 5 4 35 35 H 1.09005 * 109.46982 * 290.00197 * 6 5 4 36 36 H 1.09000 * 109.46713 * 304.99908 * 7 6 5 37 37 H 1.08995 * 109.46932 * 185.00093 * 7 6 5 38 38 H 1.08001 * 120.04446 * 359.97438 * 12 11 9 39 39 H 1.08002 * 119.83567 * 179.97438 * 13 12 11 40 40 H 1.07998 * 119.79606 * 180.27256 * 14 13 12 41 41 H 1.07998 * 119.96115 * 179.97438 * 15 14 13 42 42 H 0.96994 * 119.99396 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.50622 * 178.55286 * 26 5 4 44 44 H 1.08998 * 109.50211 * 298.67910 * 26 5 4 45 45 H 1.08996 * 109.50604 * 183.21663 * 27 26 5 46 46 H 1.08997 * 109.50647 * 63.08324 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 1.2486 5 7 3.5094 -0.7872 1.2051 6 6 4.0447 -1.4252 2.4152 7 6 5.5384 -1.6994 2.2291 8 8 6.2508 -0.4396 2.1118 9 6 7.5858 -0.5053 1.9412 10 8 8.1395 -1.5858 1.8913 11 6 8.3746 0.7334 1.8150 12 6 7.7424 1.9781 1.8722 13 6 8.4857 3.1326 1.7542 14 6 9.8588 3.0660 1.5792 15 6 10.4975 1.8437 1.5218 16 6 9.7653 0.6700 1.6388 17 8 10.3904 -0.5310 1.5822 18 6 11.7075 -0.5225 1.2948 19 1 12.2341 0.4160 1.2027 20 6 12.3864 -1.7189 1.1174 21 7 11.7453 -2.8617 1.2299 22 14 14.2112 -1.7071 0.7185 23 1 14.9531 -1.0327 1.8141 24 1 14.6966 -3.1036 0.5792 25 1 14.4350 -0.9755 -0.5542 26 6 3.9648 -1.4870 -0.0049 27 6 3.4343 -0.7558 -1.2410 28 8 2.0084 -0.6761 -1.1660 29 1 -0.3633 0.5125 0.8908 30 1 -0.3634 0.5153 -0.8892 31 1 -0.3633 -1.0276 -0.0016 32 1 1.6337 -1.7342 1.2761 33 1 1.7267 -0.1799 2.1394 34 1 3.5220 -2.3653 2.5919 35 1 3.9004 -0.7632 3.2691 36 1 5.6897 -2.2880 1.3242 37 1 5.9163 -2.2518 3.0893 38 1 6.6726 2.0355 2.0088 39 1 7.9956 4.0940 1.7981 40 1 10.4335 3.9763 1.4921 41 1 11.5679 1.8004 1.3849 42 1 12.2202 -3.6983 1.1062 43 1 5.0545 -1.5000 -0.0294 44 1 3.5881 -2.5097 0.0027 45 1 3.7215 -1.3031 -2.1388 46 1 3.8536 0.2496 -1.2770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800149821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:40 Heat of formation + Delta-G solvation = -115.897342 kcal Electronic energy + Delta-G solvation = -29168.190027 eV Core-core repulsion = 25024.417856 eV Total energy + Delta-G solvation = -4143.772171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.09380 -39.62287 -38.62434 -36.52761 -36.34397 -35.11493 -33.02866 -32.41579 -30.93325 -30.00321 -28.96472 -28.48062 -25.54776 -25.21135 -23.95935 -23.27445 -21.71949 -21.23164 -20.51546 -20.01063 -18.06688 -17.53469 -16.89684 -16.66636 -16.46018 -15.87674 -15.48558 -15.28373 -14.95877 -14.91028 -14.65955 -14.38417 -14.08620 -13.91589 -13.65500 -13.53685 -13.01257 -12.81400 -12.69569 -12.57919 -12.45292 -12.24995 -11.82589 -11.81212 -11.75378 -11.35191 -11.34172 -11.13695 -11.02342 -10.91344 -10.78859 -10.59909 -10.50868 -10.02143 -9.77368 -9.72178 -9.24527 -8.93331 -8.50021 -8.31627 -7.37836 -6.51708 -4.11564 1.61502 2.31570 3.08119 3.10387 3.12687 3.25395 3.46895 3.54069 3.65660 3.88328 4.54268 4.55949 4.72809 4.79680 4.93757 5.00636 5.01104 5.07226 5.13098 5.14874 5.20347 5.29942 5.34379 5.43151 5.46235 5.51607 5.56185 5.62594 5.68079 5.75427 5.76658 5.86586 5.87807 5.89936 6.09377 6.14542 6.58045 6.65620 6.78088 6.78716 6.90195 7.01791 7.04782 7.11840 7.23437 7.30966 7.66456 7.86882 8.74593 8.88633 9.58012 10.62064 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015691 B = 0.002783 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.079786 B =10057.588797 C =10909.964652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.024 3.976 5 N -0.528 5.528 6 C 0.059 3.941 7 C 0.064 3.936 8 O -0.351 6.351 9 C 0.495 3.505 10 O -0.481 6.481 11 C -0.215 4.215 12 C -0.013 4.013 13 C -0.235 4.235 14 C -0.044 4.044 15 C -0.240 4.240 16 C 0.191 3.809 17 O -0.126 6.126 18 C -0.403 4.403 19 H 0.095 0.905 20 C 0.045 3.955 21 N -0.833 5.833 22 Si 0.942 3.058 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.268 1.268 26 C 0.010 3.990 27 C 0.066 3.934 28 O -0.386 6.386 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.273 0.727 43 H 0.095 0.905 44 H 0.041 0.959 45 H 0.098 0.902 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.974 5.895 -0.322 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.086 0.914 4 C -0.104 4.104 5 N -0.254 5.254 6 C -0.068 4.068 7 C -0.011 4.011 8 O -0.270 6.270 9 C 0.341 3.659 10 O -0.367 6.367 11 C -0.218 4.218 12 C -0.032 4.032 13 C -0.254 4.254 14 C -0.062 4.062 15 C -0.259 4.259 16 C 0.131 3.869 17 O -0.024 6.024 18 C -0.479 4.479 19 H 0.113 0.887 20 C -0.163 4.163 21 N -0.465 5.465 22 Si 0.766 3.234 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.193 1.193 26 C -0.118 4.118 27 C -0.011 4.011 28 O -0.305 6.305 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.144 0.856 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.151 0.849 42 H 0.083 0.917 43 H 0.113 0.887 44 H 0.060 0.940 45 H 0.116 0.884 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.771 5.375 -0.468 17.618 hybrid contribution 0.927 -0.864 0.126 1.273 sum -15.844 4.511 -0.342 16.477 Atomic orbital electron populations 1.21745 0.92950 1.02820 1.02628 1.22140 0.94600 0.95860 0.84371 0.91380 1.22833 0.87971 1.00100 0.99526 1.62222 1.08240 1.52957 1.01946 1.22222 0.92713 0.98358 0.93546 1.22981 0.90181 0.85351 1.02544 1.86602 1.21538 1.34236 1.84606 1.21141 0.80040 0.90121 0.74612 1.91000 1.70807 1.29798 1.45134 1.18030 0.89975 0.90958 1.22828 1.20987 0.99067 0.90669 0.92442 1.20546 0.94134 0.97391 1.13318 1.20966 0.94439 0.96604 0.94219 1.21104 1.00900 0.91643 1.12287 1.19248 0.90045 0.86710 0.90857 1.84144 1.23643 1.23233 1.71356 1.21480 0.81527 0.94808 1.50066 0.88723 1.25406 1.00601 0.94111 0.96183 1.70106 1.36746 0.97569 1.42036 0.85769 0.80124 0.78094 0.79394 1.19291 1.20122 1.19274 1.22936 1.02194 0.95989 0.90694 1.22649 0.80453 1.00770 0.97194 1.87962 1.21408 1.78386 1.42728 0.90953 0.91578 0.91998 0.94121 0.89647 0.92817 0.89179 0.91184 0.90929 0.85610 0.87026 0.87013 0.84889 0.91708 0.88690 0.94049 0.88351 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.57 37.16 0.36 -0.71 16 2 C 0.09 0.88 3.42 -26.68 -0.09 0.78 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 4 C 0.02 0.24 4.91 -3.71 -0.02 0.22 16 5 N -0.53 -6.35 4.83 -234.30 -1.13 -7.48 16 6 C 0.06 0.68 5.67 -3.83 -0.02 0.66 16 7 C 0.06 0.97 4.96 37.16 0.18 1.15 16 8 O -0.35 -6.42 9.42 -40.64 -0.38 -6.81 16 9 C 0.50 11.20 7.89 34.46 0.27 11.47 16 10 O -0.48 -12.88 14.96 -26.59 -0.40 -13.28 16 11 C -0.22 -4.80 5.89 -104.83 -0.62 -5.41 16 12 C -0.01 -0.24 9.61 -39.18 -0.38 -0.62 16 13 C -0.23 -3.94 10.02 -39.61 -0.40 -4.34 16 14 C -0.04 -0.77 10.03 -39.53 -0.40 -1.16 16 15 C -0.24 -5.10 9.16 -39.44 -0.36 -5.46 16 16 C 0.19 4.71 6.66 -38.58 -0.26 4.46 16 17 O -0.13 -3.65 7.84 -21.02 -0.16 -3.82 16 18 C -0.40 -11.22 9.49 30.90 0.29 -10.93 16 19 H 0.10 2.37 5.21 -52.49 -0.27 2.10 16 20 C 0.05 1.23 5.49 -17.51 -0.10 1.14 16 21 N -0.83 -24.70 13.67 55.48 0.76 -23.94 16 22 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 26 C 0.01 0.12 4.94 -3.71 -0.02 0.10 16 27 C 0.07 0.76 7.01 37.21 0.26 1.02 16 28 O -0.39 -4.64 10.47 -35.23 -0.37 -5.01 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.10 5.94 -51.93 -0.31 0.79 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.13 2.02 7.61 -52.49 -0.40 1.62 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 43 H 0.09 1.33 5.94 -51.93 -0.31 1.02 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 379.19 15.07 5.71 5.71 Total: -1.00 -33.60 379.19 -8.92 -42.52 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.64 Total: 4.59 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -1.29 Total: -7.63 kcal Atomic # 7 Polarization: -31.05 SS G_CDS: -0.37 Total: -31.42 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -1.31 Total: -28.91 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.60 -8.92 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800149821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.382 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds