Wall clock time and date at job start Tue Mar 31 2020 19:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38753 * 120.05357 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94329 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05386 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.11305 * 359.97438 * 6 5 4 8 8 C 1.38165 * 120.05319 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.02348 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46373 * 145.00128 * 9 8 7 11 11 C 1.53001 * 109.47148 * 264.99983 * 9 8 7 12 12 N 1.46498 * 109.47092 * 25.00167 * 9 8 7 13 13 C 1.34779 * 119.99750 * 154.99716 * 12 9 8 14 14 O 1.21279 * 120.00314 * 359.97438 * 13 12 9 15 15 C 1.50704 * 119.99633 * 179.97438 * 13 12 9 16 16 O 1.45203 * 109.46572 * 179.97438 * 15 13 12 17 17 C 1.34227 * 116.99703 * 179.97438 * 16 15 13 18 18 O 1.20834 * 120.00109 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00339 * 180.02562 * 17 16 15 20 20 C 1.52994 * 109.47698 * 180.02562 * 19 17 16 21 21 C 1.50693 * 109.47598 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00200 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00311 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00273 * 359.97438 * 23 21 20 25 25 Si 1.86811 * 120.00048 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47049 * 89.99706 * 25 23 21 27 27 H 1.48499 * 109.46849 * 209.99733 * 25 23 21 28 28 H 1.48497 * 109.47081 * 329.99669 * 25 23 21 29 29 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 30 30 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 32 32 H 1.08001 * 120.02917 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.97030 * 179.97438 * 5 4 3 34 34 H 1.08004 * 119.93990 * 180.02562 * 6 5 4 35 35 H 1.08002 * 119.97061 * 180.28475 * 7 6 5 36 36 H 1.08998 * 109.47253 * 60.00211 * 11 9 8 37 37 H 1.09000 * 109.46923 * 179.97438 * 11 9 8 38 38 H 1.08999 * 109.47124 * 300.00085 * 11 9 8 39 39 H 0.97005 * 120.00172 * 334.99739 * 12 9 8 40 40 H 1.08998 * 109.47101 * 299.99847 * 15 13 12 41 41 H 1.09002 * 109.46861 * 60.00615 * 15 13 12 42 42 H 1.09000 * 109.47386 * 300.00653 * 19 17 16 43 43 H 1.09010 * 109.46829 * 60.00709 * 19 17 16 44 44 H 1.09003 * 109.47280 * 300.00183 * 20 19 17 45 45 H 1.08998 * 109.47070 * 60.00028 * 20 19 17 46 46 H 0.96994 * 120.00548 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5170 -0.0011 8 6 3.4311 1.2847 -0.0005 9 6 4.2537 0.0220 0.0006 10 1 3.7464 -0.7415 0.5904 11 6 4.4274 -0.4749 -1.4360 12 7 5.5689 0.2965 0.5848 13 6 6.2756 -0.7009 1.1523 14 8 5.8227 -1.8256 1.1799 15 6 7.6288 -0.4186 1.7527 16 8 8.1823 -1.6458 2.2968 17 6 9.3926 -1.5659 2.8716 18 8 9.9703 -0.5056 2.9190 19 6 10.0312 -2.7986 3.4579 20 6 11.3960 -2.4354 4.0462 21 6 12.0348 -3.6681 4.6319 22 1 11.5192 -4.6161 4.5886 23 6 13.2777 -3.5860 5.2232 24 7 13.9060 -2.4318 5.2756 25 14 14.0692 -5.1141 5.9499 26 1 14.8835 -5.7922 4.9095 27 1 14.9421 -4.7263 7.0870 28 1 13.0112 -6.0385 6.4309 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2129 2.3203 -0.0014 33 1 1.3341 4.5113 -0.0019 34 1 3.7923 4.6380 -0.0016 35 1 5.1345 2.5750 0.0032 36 1 4.9347 0.2886 -2.0257 37 1 5.0228 -1.3879 -1.4352 38 1 3.4489 -0.6791 -1.8706 39 1 5.9310 1.1962 0.5631 40 1 8.2943 -0.0298 0.9820 41 1 7.5261 0.3179 2.5497 42 1 9.3921 -3.1998 4.2445 43 1 10.1597 -3.5478 2.6766 44 1 12.0354 -2.0340 3.2599 45 1 11.2672 -1.6864 4.8275 46 1 14.7804 -2.3741 5.6912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812619066.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:22 Heat of formation + Delta-G solvation = -138.860510 kcal Electronic energy + Delta-G solvation = -27570.172288 eV Core-core repulsion = 23425.404359 eV Total energy + Delta-G solvation = -4144.767929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00242 -40.24227 -39.39639 -37.93617 -36.22215 -35.63384 -33.57319 -32.32494 -31.17640 -30.72908 -29.86175 -28.38484 -27.73353 -25.82692 -24.27424 -22.86303 -22.26466 -21.43773 -20.49381 -19.83318 -18.72740 -17.58670 -17.36862 -16.86675 -16.55595 -16.26485 -16.23908 -16.08542 -15.54135 -15.13180 -15.02111 -14.88993 -14.44187 -14.15804 -14.00679 -13.84718 -13.53915 -13.26906 -12.75249 -12.68954 -12.37413 -12.28070 -12.23526 -12.21577 -12.12293 -11.62601 -11.59216 -11.19847 -11.09520 -10.94254 -10.62972 -10.53122 -10.04585 -10.02774 -9.92292 -9.56041 -9.51886 -9.30702 -9.16216 -8.61946 -8.36001 -5.99998 -4.04565 0.78754 0.94889 2.39597 2.43093 2.78334 2.79479 3.24811 3.33733 3.39299 3.42001 3.47845 4.10770 4.30292 4.45216 4.46847 4.50389 4.62493 4.68329 4.80607 4.88951 4.97443 5.02461 5.04016 5.05446 5.09864 5.15485 5.35588 5.37111 5.49077 5.51325 5.61700 5.79739 5.88848 5.95352 6.01893 6.15523 6.21742 6.23579 6.27047 6.58835 6.88273 6.89510 7.17188 7.68021 7.74515 7.99282 7.99452 8.23523 8.39770 9.02441 9.59462 11.11036 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027121 B = 0.001704 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.167022 B =16431.533306 C =16991.160553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.138 3.862 4 C -0.205 4.205 5 C -0.081 4.081 6 C -0.151 4.151 7 C -0.079 4.079 8 C -0.121 4.121 9 C 0.195 3.805 10 H 0.104 0.896 11 C -0.155 4.155 12 N -0.728 5.728 13 C 0.519 3.481 14 O -0.511 6.511 15 C 0.045 3.955 16 O -0.341 6.341 17 C 0.459 3.541 18 O -0.506 6.506 19 C -0.102 4.102 20 C 0.033 3.967 21 C -0.528 4.528 22 H 0.059 0.941 23 C 0.059 3.941 24 N -0.890 5.890 25 Si 0.896 3.104 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.399 0.601 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.352 13.143 -14.777 35.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.092 3.908 4 C -0.223 4.223 5 C -0.099 4.099 6 C -0.169 4.169 7 C -0.098 4.098 8 C -0.123 4.123 9 C 0.091 3.909 10 H 0.122 0.878 11 C -0.214 4.214 12 N -0.385 5.385 13 C 0.304 3.696 14 O -0.384 6.384 15 C -0.033 4.033 16 O -0.258 6.258 17 C 0.302 3.698 18 O -0.393 6.393 19 C -0.139 4.139 20 C -0.004 4.004 21 C -0.566 4.566 22 H 0.078 0.922 23 C -0.143 4.143 24 N -0.529 5.529 25 Si 0.724 3.276 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.198 1.198 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.074 0.926 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.236 0.764 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -29.270 12.517 -14.675 35.054 hybrid contribution 0.377 0.201 0.351 0.553 sum -28.893 12.719 -14.325 34.666 Atomic orbital electron populations 1.23102 0.78109 1.04309 1.01321 1.86120 1.21542 1.26462 1.88316 1.18712 0.91301 0.84585 0.96185 1.21244 1.00144 0.92246 1.08692 1.20980 0.94733 0.97040 0.97147 1.21058 0.93932 0.98413 1.03487 1.20746 0.99819 0.91093 0.98124 1.19254 0.90768 0.95379 1.06852 1.19552 0.81726 0.94213 0.95431 0.87846 1.22125 1.02704 1.01792 0.94744 1.46063 1.19614 1.12001 1.60813 1.20213 0.86227 0.85183 0.77982 1.90755 1.69997 1.21580 1.56104 1.22519 0.92781 0.87887 1.00094 1.86667 1.35117 1.35015 1.69015 1.24946 0.77694 0.92854 0.74257 1.90637 1.62612 1.31387 1.54626 1.21795 0.99815 0.91518 1.00817 1.19031 0.87548 0.97299 0.96525 1.21165 1.02702 0.94742 1.38005 0.92229 1.25018 0.97176 0.96099 0.96035 1.69987 1.14567 1.24074 1.44232 0.86533 0.79313 0.83027 0.78754 1.20607 1.21212 1.19771 0.92578 0.87941 0.92551 0.85228 0.85632 0.85515 0.85417 0.92372 0.91398 0.91266 0.76413 0.88359 0.88393 0.88704 0.88699 0.95549 0.95540 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.62 9.63 -19.42 -0.19 -2.81 16 3 C 0.14 1.16 6.66 -39.22 -0.26 0.90 16 4 C -0.20 -1.36 9.04 -39.43 -0.36 -1.72 16 5 C -0.08 -0.48 10.04 -39.61 -0.40 -0.88 16 6 C -0.15 -0.92 10.04 -39.56 -0.40 -1.32 16 7 C -0.08 -0.55 9.24 -39.61 -0.37 -0.91 16 8 C -0.12 -1.03 5.07 -104.47 -0.53 -1.56 16 9 C 0.19 1.91 2.51 -69.08 -0.17 1.74 16 10 H 0.10 1.26 7.13 -51.93 -0.37 0.89 16 11 C -0.16 -1.42 9.47 37.16 0.35 -1.07 16 12 N -0.73 -6.95 5.00 -54.93 -0.27 -7.22 16 13 C 0.52 6.87 7.87 -10.98 -0.09 6.78 16 14 O -0.51 -8.88 16.16 -14.10 -0.23 -9.11 16 15 C 0.05 0.61 5.94 36.01 0.21 0.82 16 16 O -0.34 -6.08 9.75 -45.90 -0.45 -6.53 16 17 C 0.46 9.20 7.96 36.00 0.29 9.48 16 18 O -0.51 -11.26 15.73 -18.76 -0.30 -11.56 16 19 C -0.10 -2.14 5.75 -27.89 -0.16 -2.30 16 20 C 0.03 0.88 4.26 -27.89 -0.12 0.76 16 21 C -0.53 -14.91 9.11 -34.44 -0.31 -15.23 16 22 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 23 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 24 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 25 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.06 0.18 7.66 -51.93 -0.40 -0.21 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 32 H 0.13 0.59 6.30 -52.49 -0.33 0.26 16 33 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 34 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 35 H 0.13 0.62 6.07 -52.49 -0.32 0.30 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.40 2.63 6.21 -40.82 -0.25 2.38 16 40 H 0.10 1.15 8.13 -51.93 -0.42 0.72 16 41 H 0.10 1.16 8.13 -51.93 -0.42 0.74 16 42 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 43 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 44 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 45 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 393.17 15.07 5.92 5.92 Total: -1.00 -36.37 393.17 -7.88 -44.25 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.68 Total: -1.40 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -1.41 Total: -1.80 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.46 Total: -33.59 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.16 Total: -30.01 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.37 -7.88 -44.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812619066.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.609 kcal (2) G-P(sol) polarization free energy of solvation -36.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds