Wall clock time and date at job start Tue Mar 31 2020 19:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38753 * 120.05357 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94329 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05386 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.11305 * 359.97438 * 6 5 4 8 8 C 1.38165 * 120.05319 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.02348 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46373 * 145.00128 * 9 8 7 11 11 C 1.53001 * 109.47148 * 264.99983 * 9 8 7 12 12 N 1.46498 * 109.47092 * 25.00167 * 9 8 7 13 13 C 1.34779 * 119.99750 * 154.99716 * 12 9 8 14 14 O 1.21279 * 120.00314 * 359.97438 * 13 12 9 15 15 C 1.50704 * 119.99633 * 179.97438 * 13 12 9 16 16 O 1.45203 * 109.46572 * 179.97438 * 15 13 12 17 17 C 1.34227 * 116.99703 * 179.97438 * 16 15 13 18 18 O 1.20834 * 120.00109 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00339 * 180.02562 * 17 16 15 20 20 C 1.52994 * 109.47698 * 180.02562 * 19 17 16 21 21 C 1.50693 * 109.47598 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00200 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00311 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00273 * 359.97438 * 23 21 20 25 25 Si 1.86811 * 120.00048 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47049 * 89.99706 * 25 23 21 27 27 H 1.48499 * 109.46849 * 209.99733 * 25 23 21 28 28 H 1.48497 * 109.47081 * 329.99669 * 25 23 21 29 29 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 30 30 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 32 32 H 1.08001 * 120.02917 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.97030 * 179.97438 * 5 4 3 34 34 H 1.08004 * 119.93990 * 180.02562 * 6 5 4 35 35 H 1.08002 * 119.97061 * 180.28475 * 7 6 5 36 36 H 1.08998 * 109.47253 * 60.00211 * 11 9 8 37 37 H 1.09000 * 109.46923 * 179.97438 * 11 9 8 38 38 H 1.08999 * 109.47124 * 300.00085 * 11 9 8 39 39 H 0.97005 * 120.00172 * 334.99739 * 12 9 8 40 40 H 1.08998 * 109.47101 * 299.99847 * 15 13 12 41 41 H 1.09002 * 109.46861 * 60.00615 * 15 13 12 42 42 H 1.09000 * 109.47386 * 300.00653 * 19 17 16 43 43 H 1.09010 * 109.46829 * 60.00709 * 19 17 16 44 44 H 1.09003 * 109.47280 * 300.00183 * 20 19 17 45 45 H 1.08998 * 109.47070 * 60.00028 * 20 19 17 46 46 H 0.96994 * 120.00548 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5170 -0.0011 8 6 3.4311 1.2847 -0.0005 9 6 4.2537 0.0220 0.0006 10 1 3.7464 -0.7415 0.5904 11 6 4.4274 -0.4749 -1.4360 12 7 5.5689 0.2965 0.5848 13 6 6.2756 -0.7009 1.1523 14 8 5.8227 -1.8256 1.1799 15 6 7.6288 -0.4186 1.7527 16 8 8.1823 -1.6458 2.2968 17 6 9.3926 -1.5659 2.8716 18 8 9.9703 -0.5056 2.9190 19 6 10.0312 -2.7986 3.4579 20 6 11.3960 -2.4354 4.0462 21 6 12.0348 -3.6681 4.6319 22 1 11.5192 -4.6161 4.5886 23 6 13.2777 -3.5860 5.2232 24 7 13.9060 -2.4318 5.2756 25 14 14.0692 -5.1141 5.9499 26 1 14.8835 -5.7922 4.9095 27 1 14.9421 -4.7263 7.0870 28 1 13.0112 -6.0385 6.4309 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2129 2.3203 -0.0014 33 1 1.3341 4.5113 -0.0019 34 1 3.7923 4.6380 -0.0016 35 1 5.1345 2.5750 0.0032 36 1 4.9347 0.2886 -2.0257 37 1 5.0228 -1.3879 -1.4352 38 1 3.4489 -0.6791 -1.8706 39 1 5.9310 1.1962 0.5631 40 1 8.2943 -0.0298 0.9820 41 1 7.5261 0.3179 2.5497 42 1 9.3921 -3.1998 4.2445 43 1 10.1597 -3.5478 2.6766 44 1 12.0354 -2.0340 3.2599 45 1 11.2672 -1.6864 4.8275 46 1 14.7804 -2.3741 5.6912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812619066.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:22 Heat of formation + Delta-G solvation = -161.433034 kcal Electronic energy + Delta-G solvation = -27571.151106 eV Core-core repulsion = 23425.404359 eV Total energy + Delta-G solvation = -4145.746747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.82923 -41.42934 -40.49504 -38.51832 -37.61504 -36.58955 -35.64401 -33.29443 -33.03223 -31.22056 -30.58656 -29.51717 -28.14358 -27.73401 -25.02405 -24.14308 -23.33109 -22.23854 -21.52180 -21.35363 -19.39154 -19.14380 -18.32142 -18.21423 -17.92529 -17.52678 -16.84992 -16.76988 -16.68921 -16.46281 -16.31051 -15.86425 -15.51646 -15.12924 -14.95848 -14.69909 -14.49189 -14.27119 -14.15212 -13.87731 -13.74904 -13.38236 -13.22857 -13.15772 -12.83674 -12.82476 -12.70893 -12.51086 -12.18524 -12.02158 -12.01166 -11.86909 -11.76080 -11.68398 -11.52283 -11.30015 -11.06065 -10.56440 -10.39530 -9.86880 -9.14442 -8.19202 -6.32425 0.28040 0.44819 1.17807 1.21705 1.37655 1.44694 1.46286 1.57647 2.26246 2.36243 2.45398 2.75889 3.14592 3.46332 3.53922 3.85103 3.90222 4.01096 4.04571 4.07475 4.16275 4.26592 4.30567 4.38812 4.43269 4.44815 4.45798 4.48776 4.63790 4.69685 4.74028 4.85776 4.89739 4.96277 5.16635 5.19028 5.24972 5.37207 5.47828 5.49416 5.56716 5.57361 5.81248 5.81539 6.14487 6.29207 6.42247 6.73488 6.85649 7.02606 7.37448 8.93265 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027121 B = 0.001704 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.167022 B =16431.533306 C =16991.160553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.121 3.879 4 C -0.210 4.210 5 C -0.082 4.082 6 C -0.155 4.155 7 C -0.084 4.084 8 C -0.140 4.140 9 C 0.199 3.801 10 H 0.074 0.926 11 C -0.149 4.149 12 N -0.707 5.707 13 C 0.523 3.477 14 O -0.559 6.559 15 C 0.039 3.961 16 O -0.346 6.346 17 C 0.471 3.529 18 O -0.534 6.534 19 C -0.096 4.096 20 C 0.040 3.960 21 C -0.546 4.546 22 H 0.075 0.925 23 C -0.002 4.002 24 N -0.934 5.934 25 Si 0.973 3.027 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.259 1.259 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.416 0.584 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.114 0.886 44 H -0.006 1.006 45 H -0.006 1.006 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.545 13.679 -15.211 36.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.075 3.925 4 C -0.228 4.228 5 C -0.100 4.100 6 C -0.173 4.173 7 C -0.103 4.103 8 C -0.142 4.142 9 C 0.095 3.905 10 H 0.092 0.908 11 C -0.207 4.207 12 N -0.363 5.363 13 C 0.309 3.691 14 O -0.436 6.436 15 C -0.038 4.038 16 O -0.262 6.262 17 C 0.315 3.685 18 O -0.423 6.423 19 C -0.133 4.133 20 C 0.002 3.998 21 C -0.584 4.584 22 H 0.093 0.907 23 C -0.200 4.200 24 N -0.573 5.573 25 Si 0.797 3.203 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.183 1.183 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.256 0.744 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.013 0.987 45 H 0.012 0.988 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -30.506 13.089 -15.137 36.484 hybrid contribution 0.610 0.157 0.424 0.759 sum -29.896 13.246 -14.713 35.857 Atomic orbital electron populations 1.23327 0.76483 1.05368 1.02356 1.86088 1.23417 1.27030 1.88493 1.18959 0.91565 0.85175 0.96825 1.21506 1.01123 0.91940 1.08246 1.21356 0.95093 0.97673 0.95874 1.21380 0.94205 0.99020 1.02685 1.20985 1.00844 0.90724 0.97714 1.19224 0.90936 0.95128 1.08881 1.19435 0.81406 0.94605 0.95082 0.90794 1.22051 1.02713 1.01249 0.94657 1.45897 1.19178 1.12080 1.59151 1.20200 0.86128 0.85026 0.77745 1.90742 1.71023 1.23534 1.58303 1.22889 0.93042 0.86537 1.01358 1.86597 1.33747 1.37272 1.68606 1.24497 0.78137 0.91892 0.73932 1.90628 1.63545 1.32211 1.55886 1.21539 0.97313 0.92541 1.01914 1.18801 0.90169 0.96069 0.94715 1.21641 1.03192 0.95706 1.37827 0.90720 1.26058 0.97938 0.99581 0.96437 1.70140 1.15117 1.26732 1.45335 0.85328 0.78399 0.78710 0.77857 1.19723 1.21012 1.18262 0.91220 0.87015 0.91745 0.83467 0.83243 0.83386 0.83750 0.90856 0.93366 0.90937 0.74424 0.86139 0.86393 0.86867 0.86796 0.98745 0.98764 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.73 9.63 -92.40 -0.89 -6.62 16 3 C 0.12 1.96 6.66 22.50 0.15 2.11 16 4 C -0.21 -2.44 9.04 22.37 0.20 -2.24 16 5 C -0.08 -0.78 10.04 22.25 0.22 -0.55 16 6 C -0.15 -1.50 10.04 22.28 0.22 -1.28 16 7 C -0.08 -1.00 9.24 22.25 0.21 -0.80 16 8 C -0.14 -2.29 5.07 -19.77 -0.10 -2.39 16 9 C 0.20 3.92 2.51 44.25 0.11 4.03 16 10 H 0.07 1.92 7.13 -2.39 -0.02 1.90 16 11 C -0.15 -2.72 9.47 71.98 0.68 -2.04 16 12 N -0.71 -12.93 5.00 -446.09 -2.23 -15.16 16 13 C 0.52 13.65 7.87 87.66 0.69 14.34 16 14 O -0.56 -19.82 16.16 15.77 0.25 -19.56 16 15 C 0.04 0.99 5.94 71.24 0.42 1.42 16 16 O -0.35 -12.07 9.75 -45.03 -0.44 -12.51 16 17 C 0.47 18.74 7.96 71.24 0.57 19.31 16 18 O -0.53 -23.88 15.73 21.94 0.35 -23.54 16 19 C -0.10 -4.00 5.75 29.85 0.17 -3.83 16 20 C 0.04 2.16 4.26 29.84 0.13 2.29 16 21 C -0.55 -30.87 9.11 25.60 0.23 -30.64 16 22 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 23 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 24 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 25 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 28 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 29 H 0.07 0.38 7.66 -2.38 -0.02 0.36 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.42 7.66 -2.39 -0.02 0.40 16 32 H 0.15 1.06 6.30 -2.91 -0.02 1.04 16 33 H 0.15 0.64 8.06 -2.91 -0.02 0.61 16 34 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.14 1.05 6.07 -2.91 -0.02 1.03 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 39 H 0.42 4.73 6.21 -92.70 -0.58 4.15 16 40 H 0.12 2.60 8.13 -2.39 -0.02 2.58 16 41 H 0.12 2.59 8.13 -2.39 -0.02 2.58 16 42 H 0.11 4.31 8.14 -2.39 -0.02 4.29 16 43 H 0.11 4.32 8.14 -2.38 -0.02 4.30 16 44 H -0.01 -0.35 8.10 -2.39 -0.02 -0.37 16 45 H -0.01 -0.36 8.10 -2.39 -0.02 -0.38 16 46 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -80.63 393.17 5.26 -75.37 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.42 Total: 12.11 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 5.48 Total: 1.34 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -1.94 Total: -72.79 kcal Atomic # 8 Polarization: -61.50 SS G_CDS: -0.73 Total: -62.23 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -80.63 5.26 -75.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812619066.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.067 kcal (2) G-P(sol) polarization free energy of solvation -80.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds