Wall clock time and date at job start Tue Mar 31 2020 19:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 116.99923 * 2 1 4 4 C 1.38750 * 120.05343 * 359.97438 * 3 2 1 5 5 C 1.38118 * 119.94223 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05715 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11326 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05368 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.03017 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.47242 * 212.76717 * 9 8 7 11 11 C 1.52999 * 109.47082 * 92.76683 * 9 8 7 12 12 N 1.46499 * 109.47028 * 332.76959 * 9 8 7 13 13 C 1.34776 * 119.99655 * 207.19402 * 12 9 8 14 14 O 1.21281 * 120.00338 * 359.97438 * 13 12 9 15 15 C 1.50705 * 119.99722 * 179.97438 * 13 12 9 16 16 O 1.45195 * 109.47068 * 179.97438 * 15 13 12 17 17 C 1.34233 * 117.00058 * 180.02562 * 16 15 13 18 18 O 1.20825 * 119.99907 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99967 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47147 * 179.97438 * 19 17 16 21 21 C 1.50693 * 109.47379 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99951 * 0.02562 * 21 20 19 23 23 C 1.37880 * 120.00132 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99964 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 119.99881 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47082 * 89.99739 * 25 23 21 27 27 H 1.48495 * 109.46948 * 209.99344 * 25 23 21 28 28 H 1.48493 * 109.47195 * 329.99740 * 25 23 21 29 29 H 1.09004 * 109.47179 * 299.99837 * 1 2 3 30 30 H 1.08994 * 109.47381 * 60.00276 * 1 2 3 31 31 H 1.09002 * 109.47116 * 180.02562 * 1 2 3 32 32 H 1.08008 * 120.02964 * 0.05292 * 4 3 2 33 33 H 1.08004 * 119.97327 * 179.72360 * 5 4 3 34 34 H 1.08002 * 119.94778 * 179.97438 * 6 5 4 35 35 H 1.07999 * 119.97697 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.47342 * 60.00123 * 11 9 8 37 37 H 1.09003 * 109.47188 * 180.02562 * 11 9 8 38 38 H 1.09011 * 109.47211 * 300.00241 * 11 9 8 39 39 H 0.97003 * 120.00171 * 27.18689 * 12 9 8 40 40 H 1.08997 * 109.47289 * 299.99438 * 15 13 12 41 41 H 1.09005 * 109.47132 * 59.99880 * 15 13 12 42 42 H 1.08994 * 109.47258 * 299.99347 * 19 17 16 43 43 H 1.09000 * 109.47262 * 59.99585 * 19 17 16 44 44 H 1.09000 * 109.47179 * 300.00434 * 20 19 17 45 45 H 1.09000 * 109.46944 * 59.99922 * 20 19 17 46 46 H 0.96999 * 119.99960 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0021 8 6 3.4311 1.2849 -0.0016 9 6 4.2537 0.0222 -0.0016 10 1 3.7278 -0.7541 -0.5574 11 6 4.4743 -0.4428 1.4392 12 7 5.5491 0.2833 -0.6342 13 6 6.2167 -0.7181 -1.2408 14 8 5.7454 -1.8353 -1.2627 15 6 7.5490 -0.4494 -1.8920 16 8 8.0615 -1.6785 -2.4706 17 6 9.2490 -1.6103 -3.0927 18 8 9.8404 -0.5584 -3.1521 19 6 9.8441 -2.8457 -3.7179 20 6 11.1899 -2.4964 -4.3564 21 6 11.7853 -3.7318 -4.9811 22 1 11.2565 -4.6720 -4.9284 23 6 13.0047 -3.6616 -5.6209 24 7 13.5245 -4.7399 -6.1656 25 14 13.9189 -2.0353 -5.7127 26 1 14.8102 -1.9012 -4.5325 27 1 14.7323 -1.9941 -6.9544 28 1 12.9412 -0.9177 -5.7241 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2127 2.3203 -0.0001 33 1 1.3339 4.5113 -0.0060 34 1 3.7921 4.6381 -0.0024 35 1 5.1343 2.5752 -0.0021 36 1 3.5106 -0.6371 1.9099 37 1 5.0697 -1.3559 1.4393 38 1 5.0002 0.3336 1.9951 39 1 5.9262 1.1768 -0.6165 40 1 7.4261 0.2980 -2.6759 41 1 8.2509 -0.0798 -1.1444 42 1 9.9920 -3.6059 -2.9510 43 1 9.1678 -3.2277 -4.4826 44 1 11.0418 -1.7362 -5.1235 45 1 11.8664 -2.1141 -3.5920 46 1 14.3825 -4.6905 -6.6154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812619067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:25 Heat of formation + Delta-G solvation = -136.140841 kcal Electronic energy + Delta-G solvation = -27642.137795 eV Core-core repulsion = 23497.487800 eV Total energy + Delta-G solvation = -4144.649995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02982 -40.34376 -39.47482 -37.96384 -36.33732 -35.69938 -33.61934 -32.36849 -31.44042 -30.74774 -29.91902 -28.53055 -27.75170 -26.21397 -24.30522 -22.86926 -22.07361 -21.39758 -20.54698 -19.83764 -18.75629 -17.75125 -17.44021 -16.95162 -16.66670 -16.58605 -16.26058 -16.13875 -15.65084 -15.19407 -15.05826 -14.97095 -14.22317 -14.13475 -14.03359 -13.89529 -13.61933 -13.35326 -12.81341 -12.76219 -12.70815 -12.38868 -12.34374 -12.29738 -12.19670 -11.64884 -11.61688 -11.46026 -11.12307 -11.01818 -10.64662 -10.33057 -10.19255 -10.08976 -9.90561 -9.70920 -9.55473 -9.34498 -9.24429 -8.64647 -8.54408 -6.05591 -4.05439 0.76103 0.92400 2.32158 2.37644 2.63708 2.77572 3.21809 3.34856 3.37826 3.41957 3.50456 4.08254 4.27985 4.41167 4.46712 4.47157 4.60237 4.67007 4.78081 4.86096 4.92260 4.96124 4.98485 5.02759 5.04350 5.12680 5.28875 5.32921 5.35913 5.46982 5.58577 5.76967 5.85964 5.91484 5.99252 6.02258 6.03553 6.19107 6.23855 6.43881 6.71923 6.86207 7.12282 7.24137 7.31737 7.71715 7.94171 8.14616 8.48650 8.97306 9.55867 11.07008 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025140 B = 0.001799 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.498920 B =15563.660774 C =16171.502096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.139 3.861 4 C -0.205 4.205 5 C -0.080 4.080 6 C -0.151 4.151 7 C -0.079 4.079 8 C -0.122 4.122 9 C 0.194 3.806 10 H 0.105 0.895 11 C -0.155 4.155 12 N -0.728 5.728 13 C 0.518 3.482 14 O -0.510 6.510 15 C 0.045 3.955 16 O -0.338 6.338 17 C 0.460 3.540 18 O -0.512 6.512 19 C -0.094 4.094 20 C -0.002 4.002 21 C -0.527 4.527 22 H 0.076 0.924 23 C 0.070 3.930 24 N -0.900 5.900 25 Si 0.878 3.122 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.262 1.262 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.399 0.601 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.026 0.974 45 H 0.021 0.979 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.632 18.377 17.087 38.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.093 3.907 4 C -0.223 4.223 5 C -0.099 4.099 6 C -0.169 4.169 7 C -0.097 4.097 8 C -0.123 4.123 9 C 0.090 3.910 10 H 0.123 0.877 11 C -0.214 4.214 12 N -0.384 5.384 13 C 0.303 3.697 14 O -0.383 6.383 15 C -0.033 4.033 16 O -0.255 6.255 17 C 0.304 3.696 18 O -0.399 6.399 19 C -0.132 4.132 20 C -0.039 4.039 21 C -0.565 4.565 22 H 0.094 0.906 23 C -0.131 4.131 24 N -0.538 5.538 25 Si 0.705 3.295 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.186 1.186 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.235 0.765 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.044 0.956 45 H 0.040 0.960 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -28.572 17.592 16.950 37.592 hybrid contribution 0.466 1.700 -0.046 1.763 sum -28.106 19.292 16.904 38.051 Atomic orbital electron populations 1.23104 0.78074 1.04340 1.01325 1.86121 1.21575 1.26446 1.88298 1.18724 0.91322 0.84593 0.96102 1.21248 1.00166 0.92244 1.08673 1.20980 0.94732 0.97049 0.97099 1.21053 0.93939 0.98401 1.03555 1.20741 0.99795 0.91096 0.98114 1.19262 0.90765 0.95386 1.06907 1.19569 0.82257 0.94467 0.94731 0.87672 1.22131 1.02647 1.01869 0.94710 1.46039 1.21682 1.12403 1.58267 1.20186 0.86030 0.85098 0.78347 1.90765 1.67952 1.22088 1.57495 1.22537 0.93599 0.87731 0.99399 1.86662 1.37165 1.35217 1.66434 1.24912 0.77487 0.92613 0.74565 1.90619 1.60826 1.32069 1.56399 1.21571 0.99386 0.91518 1.00698 1.19493 0.90225 0.98069 0.96135 1.21035 1.04819 0.95178 1.35450 0.90568 1.24959 0.97122 0.96398 0.94660 1.69905 1.18679 1.28239 1.37009 0.86796 0.80190 0.84968 0.77589 1.20179 1.21337 1.18617 0.92569 0.92541 0.87915 0.85211 0.85627 0.85541 0.85459 0.91254 0.91430 0.92361 0.76451 0.88353 0.88329 0.88058 0.88039 0.95574 0.96019 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.59 9.59 -19.44 -0.19 -2.77 16 3 C 0.14 1.14 6.66 -39.22 -0.26 0.88 16 4 C -0.20 -1.33 9.04 -39.44 -0.36 -1.68 16 5 C -0.08 -0.47 10.04 -39.61 -0.40 -0.86 16 6 C -0.15 -0.89 10.04 -39.56 -0.40 -1.29 16 7 C -0.08 -0.52 9.22 -39.61 -0.37 -0.88 16 8 C -0.12 -1.01 5.06 -104.47 -0.53 -1.53 16 9 C 0.19 1.84 2.57 -69.08 -0.18 1.66 16 10 H 0.11 1.26 6.99 -51.93 -0.36 0.90 16 11 C -0.16 -1.35 9.49 37.16 0.35 -1.00 16 12 N -0.73 -6.61 4.98 -54.93 -0.27 -6.88 16 13 C 0.52 6.59 7.89 -10.98 -0.09 6.51 16 14 O -0.51 -8.65 16.13 -14.10 -0.23 -8.88 16 15 C 0.05 0.57 5.94 36.01 0.21 0.79 16 16 O -0.34 -5.74 9.75 -45.91 -0.45 -6.19 16 17 C 0.46 8.68 7.96 36.01 0.29 8.97 16 18 O -0.51 -10.59 15.73 -18.75 -0.29 -10.89 16 19 C -0.09 -1.89 5.75 -27.88 -0.16 -2.05 16 20 C 0.00 -0.04 3.33 -27.89 -0.09 -0.13 16 21 C -0.53 -14.99 9.66 -34.44 -0.33 -15.33 16 22 H 0.08 2.27 7.99 -52.49 -0.42 1.86 16 23 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 24 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 25 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 29 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 30 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.13 0.58 6.30 -52.48 -0.33 0.25 16 33 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 34 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 35 H 0.13 0.57 6.17 -52.49 -0.32 0.25 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 39 H 0.40 2.43 6.31 -40.82 -0.26 2.17 16 40 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 41 H 0.10 1.07 8.13 -51.93 -0.42 0.64 16 42 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 43 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 44 H 0.03 0.66 7.16 -51.93 -0.37 0.28 16 45 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -36.50 389.60 -7.51 -44.01 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.65 Total: -1.92 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.41 Total: -2.88 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.50 Total: -33.86 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.16 Total: -28.73 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.50 -7.51 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812619067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.134 kcal (2) G-P(sol) polarization free energy of solvation -36.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds