Wall clock time and date at job start Tue Mar 31 2020 19:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 116.99923 * 2 1 4 4 C 1.38750 * 120.05343 * 359.97438 * 3 2 1 5 5 C 1.38118 * 119.94223 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05715 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11326 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05368 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.03017 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.47242 * 212.76717 * 9 8 7 11 11 C 1.52999 * 109.47082 * 92.76683 * 9 8 7 12 12 N 1.46499 * 109.47028 * 332.76959 * 9 8 7 13 13 C 1.34776 * 119.99655 * 207.19402 * 12 9 8 14 14 O 1.21281 * 120.00338 * 359.97438 * 13 12 9 15 15 C 1.50705 * 119.99722 * 179.97438 * 13 12 9 16 16 O 1.45195 * 109.47068 * 179.97438 * 15 13 12 17 17 C 1.34233 * 117.00058 * 180.02562 * 16 15 13 18 18 O 1.20825 * 119.99907 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99967 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47147 * 179.97438 * 19 17 16 21 21 C 1.50693 * 109.47379 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99951 * 0.02562 * 21 20 19 23 23 C 1.37880 * 120.00132 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99964 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 119.99881 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47082 * 89.99739 * 25 23 21 27 27 H 1.48495 * 109.46948 * 209.99344 * 25 23 21 28 28 H 1.48493 * 109.47195 * 329.99740 * 25 23 21 29 29 H 1.09004 * 109.47179 * 299.99837 * 1 2 3 30 30 H 1.08994 * 109.47381 * 60.00276 * 1 2 3 31 31 H 1.09002 * 109.47116 * 180.02562 * 1 2 3 32 32 H 1.08008 * 120.02964 * 0.05292 * 4 3 2 33 33 H 1.08004 * 119.97327 * 179.72360 * 5 4 3 34 34 H 1.08002 * 119.94778 * 179.97438 * 6 5 4 35 35 H 1.07999 * 119.97697 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.47342 * 60.00123 * 11 9 8 37 37 H 1.09003 * 109.47188 * 180.02562 * 11 9 8 38 38 H 1.09011 * 109.47211 * 300.00241 * 11 9 8 39 39 H 0.97003 * 120.00171 * 27.18689 * 12 9 8 40 40 H 1.08997 * 109.47289 * 299.99438 * 15 13 12 41 41 H 1.09005 * 109.47132 * 59.99880 * 15 13 12 42 42 H 1.08994 * 109.47258 * 299.99347 * 19 17 16 43 43 H 1.09000 * 109.47262 * 59.99585 * 19 17 16 44 44 H 1.09000 * 109.47179 * 300.00434 * 20 19 17 45 45 H 1.09000 * 109.46944 * 59.99922 * 20 19 17 46 46 H 0.96999 * 119.99960 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0021 8 6 3.4311 1.2849 -0.0016 9 6 4.2537 0.0222 -0.0016 10 1 3.7278 -0.7541 -0.5574 11 6 4.4743 -0.4428 1.4392 12 7 5.5491 0.2833 -0.6342 13 6 6.2167 -0.7181 -1.2408 14 8 5.7454 -1.8353 -1.2627 15 6 7.5490 -0.4494 -1.8920 16 8 8.0615 -1.6785 -2.4706 17 6 9.2490 -1.6103 -3.0927 18 8 9.8404 -0.5584 -3.1521 19 6 9.8441 -2.8457 -3.7179 20 6 11.1899 -2.4964 -4.3564 21 6 11.7853 -3.7318 -4.9811 22 1 11.2565 -4.6720 -4.9284 23 6 13.0047 -3.6616 -5.6209 24 7 13.5245 -4.7399 -6.1656 25 14 13.9189 -2.0353 -5.7127 26 1 14.8102 -1.9012 -4.5325 27 1 14.7323 -1.9941 -6.9544 28 1 12.9412 -0.9177 -5.7241 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2127 2.3203 -0.0001 33 1 1.3339 4.5113 -0.0060 34 1 3.7921 4.6381 -0.0024 35 1 5.1343 2.5752 -0.0021 36 1 3.5106 -0.6371 1.9099 37 1 5.0697 -1.3559 1.4393 38 1 5.0002 0.3336 1.9951 39 1 5.9262 1.1768 -0.6165 40 1 7.4261 0.2980 -2.6759 41 1 8.2509 -0.0798 -1.1444 42 1 9.9920 -3.6059 -2.9510 43 1 9.1678 -3.2277 -4.4826 44 1 11.0418 -1.7362 -5.1235 45 1 11.8664 -2.1141 -3.5920 46 1 14.3825 -4.6905 -6.6154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812619067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:24 Heat of formation + Delta-G solvation = -159.181621 kcal Electronic energy + Delta-G solvation = -27643.136918 eV Core-core repulsion = 23497.487800 eV Total energy + Delta-G solvation = -4145.649118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83701 -41.43692 -40.49687 -38.52161 -37.64137 -36.59249 -35.62778 -33.49008 -33.12077 -31.21317 -30.61588 -29.61802 -28.16413 -27.97805 -24.99214 -23.82842 -23.29094 -22.22032 -21.49192 -21.35498 -19.47710 -19.29705 -18.47369 -18.30522 -17.93736 -17.54777 -16.85682 -16.80338 -16.69409 -16.32451 -16.24996 -15.86232 -15.50713 -15.19318 -14.96878 -14.77502 -14.67594 -14.48879 -14.19575 -13.86996 -13.78682 -13.38976 -13.30268 -13.21887 -12.91570 -12.83390 -12.71728 -12.24923 -12.18094 -12.02776 -12.02419 -11.89109 -11.77873 -11.68563 -11.54572 -11.41420 -11.07373 -10.77502 -10.38505 -9.87136 -9.14783 -8.30248 -6.35128 0.27971 0.44763 1.14891 1.21432 1.36864 1.38382 1.38550 1.52327 2.26893 2.36054 2.36382 2.76051 3.04960 3.47130 3.54100 3.85145 3.86105 4.02126 4.04474 4.06498 4.16423 4.26536 4.30363 4.33249 4.37975 4.38663 4.42982 4.48729 4.63631 4.69707 4.73330 4.81905 4.87851 4.96733 5.16729 5.18798 5.19638 5.30789 5.37358 5.37484 5.49388 5.57200 5.59211 5.81445 6.22446 6.30040 6.41945 6.67221 6.75914 7.03786 7.29803 8.85458 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025140 B = 0.001799 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.498920 B =15563.660774 C =16171.502096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.120 3.880 4 C -0.210 4.210 5 C -0.082 4.082 6 C -0.155 4.155 7 C -0.083 4.083 8 C -0.141 4.141 9 C 0.198 3.802 10 H 0.074 0.926 11 C -0.149 4.149 12 N -0.706 5.706 13 C 0.521 3.479 14 O -0.560 6.560 15 C 0.040 3.960 16 O -0.347 6.347 17 C 0.474 3.526 18 O -0.530 6.530 19 C -0.093 4.093 20 C 0.004 3.996 21 C -0.535 4.535 22 H 0.047 0.953 23 C 0.012 3.988 24 N -0.944 5.944 25 Si 0.943 3.057 26 H -0.266 1.266 27 H -0.280 1.280 28 H -0.254 1.254 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.416 0.584 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.021 0.979 45 H 0.020 0.980 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.315 21.777 18.063 40.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.074 3.926 4 C -0.229 4.229 5 C -0.100 4.100 6 C -0.173 4.173 7 C -0.101 4.101 8 C -0.142 4.142 9 C 0.094 3.906 10 H 0.092 0.908 11 C -0.207 4.207 12 N -0.362 5.362 13 C 0.307 3.693 14 O -0.438 6.438 15 C -0.037 4.037 16 O -0.263 6.263 17 C 0.319 3.681 18 O -0.419 6.419 19 C -0.131 4.131 20 C -0.034 4.034 21 C -0.572 4.572 22 H 0.066 0.934 23 C -0.186 4.186 24 N -0.584 5.584 25 Si 0.767 3.233 26 H -0.191 1.191 27 H -0.206 1.206 28 H -0.178 1.178 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.164 0.836 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.256 0.744 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.040 0.960 45 H 0.039 0.961 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -29.287 21.039 17.953 40.283 hybrid contribution 0.516 0.644 -0.298 0.877 sum -28.771 21.683 17.656 40.121 Atomic orbital electron populations 1.23320 0.76504 1.05343 1.02346 1.86089 1.23405 1.27096 1.88509 1.18986 0.91655 0.85134 0.96836 1.21502 1.01102 0.91984 1.08308 1.21354 0.95160 0.97621 0.95881 1.21383 0.94155 0.99069 1.02685 1.20994 1.00906 0.90631 0.97583 1.19245 0.90879 0.95214 1.08867 1.19435 0.82029 0.94731 0.94450 0.90818 1.22058 1.02623 1.01420 0.94570 1.45869 1.21177 1.12507 1.56653 1.20268 0.86030 0.84890 0.78112 1.90753 1.69151 1.24170 1.59706 1.22904 0.93778 0.86387 1.00628 1.86597 1.36031 1.37549 1.66141 1.24306 0.77849 0.91552 0.74375 1.90609 1.61524 1.32483 1.57322 1.21356 0.97662 0.92695 1.01362 1.19325 0.92313 0.95882 0.95873 1.21352 1.04821 0.95725 1.35340 0.93422 1.25863 0.98258 1.00055 0.94416 1.70035 1.19457 1.30601 1.38299 0.85755 0.79011 0.80450 0.78086 1.19149 1.20570 1.17784 0.91210 0.91764 0.87064 0.83563 0.83289 0.83332 0.83584 0.91063 0.93355 0.90692 0.74381 0.86130 0.85849 0.87041 0.87115 0.96028 0.96114 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.71 9.59 -92.47 -0.89 -6.59 16 3 C 0.12 1.90 6.66 22.51 0.15 2.05 16 4 C -0.21 -2.38 9.04 22.36 0.20 -2.18 16 5 C -0.08 -0.73 10.04 22.25 0.22 -0.51 16 6 C -0.15 -1.37 10.04 22.28 0.22 -1.15 16 7 C -0.08 -0.90 9.22 22.25 0.21 -0.69 16 8 C -0.14 -2.20 5.06 -19.77 -0.10 -2.30 16 9 C 0.20 3.74 2.57 44.25 0.11 3.85 16 10 H 0.07 1.88 6.99 -2.39 -0.02 1.87 16 11 C -0.15 -2.58 9.49 71.98 0.68 -1.89 16 12 N -0.71 -11.99 4.98 -446.10 -2.22 -14.21 16 13 C 0.52 12.87 7.89 87.66 0.69 13.56 16 14 O -0.56 -19.42 16.13 15.77 0.25 -19.16 16 15 C 0.04 0.93 5.94 71.24 0.42 1.35 16 16 O -0.35 -11.31 9.75 -45.09 -0.44 -11.75 16 17 C 0.47 17.14 7.96 71.24 0.57 17.71 16 18 O -0.53 -20.80 15.73 21.97 0.35 -20.45 16 19 C -0.09 -3.66 5.75 29.85 0.17 -3.49 16 20 C 0.00 0.18 3.33 29.85 0.10 0.27 16 21 C -0.53 -30.70 9.66 25.60 0.25 -30.45 16 22 H 0.05 2.93 7.99 -2.91 -0.02 2.90 16 23 C 0.01 0.70 5.47 84.66 0.46 1.16 16 24 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 25 Si 0.94 45.36 27.47 68.60 1.88 47.24 16 26 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 27 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 28 H -0.25 -11.81 6.54 99.48 0.65 -11.16 16 29 H 0.07 0.38 7.66 -2.38 -0.02 0.36 16 30 H 0.06 0.42 7.66 -2.39 -0.02 0.40 16 31 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.15 1.03 6.30 -2.91 -0.02 1.01 16 33 H 0.15 0.57 8.06 -2.91 -0.02 0.54 16 34 H 0.15 0.62 8.06 -2.91 -0.02 0.60 16 35 H 0.15 0.86 6.17 -2.91 -0.02 0.84 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.42 4.05 6.31 -92.71 -0.59 3.47 16 40 H 0.12 2.31 8.13 -2.39 -0.02 2.29 16 41 H 0.12 2.30 8.13 -2.38 -0.02 2.28 16 42 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 43 H 0.11 4.11 8.14 -2.39 -0.02 4.10 16 44 H 0.02 1.05 7.16 -2.39 -0.02 1.04 16 45 H 0.02 1.00 7.53 -2.39 -0.02 0.98 16 46 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -79.81 389.60 5.07 -74.74 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.36 Total: 10.34 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 5.48 Total: -1.44 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -1.92 Total: -72.92 kcal Atomic # 8 Polarization: -57.24 SS G_CDS: -0.73 Total: -57.96 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -79.81 5.07 -74.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812619067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.444 kcal (2) G-P(sol) polarization free energy of solvation -79.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds