Wall clock time and date at job start Tue Mar 31 2020 18:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.34779 * 119.99872 * 180.02562 * 4 3 2 6 6 O 1.21553 * 119.99965 * 0.02562 * 5 4 3 7 7 C 1.47862 * 119.99780 * 180.02562 * 5 4 3 8 8 C 1.39704 * 120.07563 * 359.73245 * 7 5 4 9 9 C 1.38064 * 120.16100 * 179.71595 * 8 7 5 10 10 C 1.38093 * 120.29685 * 0.55580 * 9 8 7 11 11 C 1.39711 * 120.14099 * 359.71819 * 10 9 8 12 12 C 1.47740 * 120.08133 * 180.02562 * 11 10 9 13 13 O 1.21462 * 120.00230 * 179.97438 * 12 11 10 14 14 O 1.34711 * 119.99668 * 359.97438 * 12 11 10 15 15 C 1.45192 * 116.99840 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47434 * 180.02562 * 15 14 12 17 17 O 1.42905 * 109.46975 * 64.99684 * 16 15 14 18 18 C 1.42901 * 113.99429 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.46662 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99543 * 359.97438 * 19 18 17 21 21 C 1.37872 * 119.99850 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00266 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99989 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46924 * 59.99226 * 23 21 19 25 25 H 1.48496 * 109.47180 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46896 * 299.99614 * 23 21 19 27 27 C 1.39287 * 120.07121 * 179.97438 * 7 5 4 28 28 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 32 32 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 33 33 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 34 34 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 35 35 H 0.97000 * 120.00420 * 0.02562 * 4 3 2 36 36 H 1.08004 * 119.92079 * 359.97000 * 8 7 5 37 37 H 1.07997 * 119.85140 * 180.24951 * 9 8 7 38 38 H 1.08000 * 119.92498 * 179.69738 * 10 9 8 39 39 H 1.09008 * 109.47162 * 299.99999 * 15 14 12 40 40 H 1.08998 * 109.47528 * 59.99769 * 15 14 12 41 41 H 1.09003 * 109.47441 * 184.99962 * 16 15 14 42 42 H 1.08999 * 109.47166 * 305.00082 * 16 15 14 43 43 H 1.08994 * 109.47562 * 299.99605 * 18 17 16 44 44 H 1.09005 * 109.47204 * 60.00574 * 18 17 16 45 45 H 0.97004 * 120.00013 * 180.02562 * 22 21 19 46 46 H 1.08002 * 120.14231 * 359.97438 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1788 2.6097 -0.0002 6 8 3.5710 3.6624 0.0011 7 6 5.6574 2.6097 -0.0014 8 6 6.3575 1.4008 0.0027 9 6 7.7381 1.3986 -0.0043 10 6 8.4366 2.5899 -0.0039 11 6 7.7492 3.8062 -0.0022 12 6 8.4978 5.0799 -0.0023 13 8 7.8988 6.1365 -0.0014 14 8 9.8449 5.0693 -0.0035 15 6 10.5141 6.3578 -0.0040 16 6 12.0293 6.1456 -0.0060 17 8 12.4205 5.5158 -1.2277 18 6 13.8245 5.2705 -1.3314 19 6 14.1224 4.6080 -2.6518 20 1 13.3198 4.3952 -3.3424 21 6 15.4194 4.2727 -2.9777 22 7 16.3968 4.5314 -2.1365 23 14 15.7889 3.4521 -4.6147 24 1 15.3591 4.3424 -5.7228 25 1 17.2478 3.1971 -4.7225 26 1 15.0532 2.1649 -4.7003 27 6 6.3554 3.8151 -0.0015 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9900 0.6025 -0.0013 36 1 5.8174 0.4655 0.0072 37 1 8.2743 0.4611 -0.0052 38 1 9.5166 2.5812 -0.0045 39 1 10.2248 6.9171 -0.8939 40 1 10.2264 6.9172 0.8861 41 1 12.5313 7.1091 0.0831 42 1 12.3085 5.5113 0.8353 43 1 14.3641 6.2156 -1.2696 44 1 14.1405 4.6178 -0.5175 45 1 17.3093 4.2958 -2.3660 46 1 5.8189 4.7524 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815213648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:02 Heat of formation + Delta-G solvation = -155.538442 kcal Electronic energy + Delta-G solvation = -27044.824270 eV Core-core repulsion = 22899.333131 eV Total energy + Delta-G solvation = -4145.491138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.82637 -40.11201 -38.48584 -37.03702 -36.25622 -36.02019 -33.38226 -32.79595 -31.79390 -31.44381 -30.00771 -27.06459 -26.86392 -24.79105 -23.85582 -22.47807 -22.21918 -22.02128 -21.45073 -20.46145 -18.67325 -17.35005 -16.68611 -16.60971 -16.51421 -16.32980 -16.26085 -16.10235 -15.35976 -14.97471 -14.88944 -14.66573 -14.54018 -14.29952 -14.11923 -13.65045 -13.42189 -13.32554 -12.95676 -12.71708 -12.59774 -12.50291 -12.30450 -11.99278 -11.70982 -11.65670 -11.44910 -11.44186 -10.96768 -10.87850 -10.78788 -10.52967 -10.40765 -10.30383 -10.07161 -9.61711 -9.44950 -9.32113 -9.16396 -8.89740 -8.23640 -6.13842 -4.15766 0.26541 0.69646 2.18979 2.52780 2.75621 2.80972 3.30423 3.33269 3.37113 3.54952 4.18905 4.27838 4.30371 4.39042 4.41489 4.47682 4.64513 4.68945 4.74336 4.87563 5.00388 5.07098 5.08460 5.19091 5.21788 5.22667 5.32387 5.44758 5.46826 5.54050 5.56001 5.65112 5.75512 5.84452 5.88820 5.92901 5.95680 6.00067 6.08578 6.37148 6.51312 7.02464 7.02965 7.37359 7.75303 7.77645 7.79991 8.10256 8.49908 8.96480 9.49079 10.97542 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.001842 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.495959 B =15194.884508 C =16405.162594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.117 3.883 4 N -0.729 5.729 5 C 0.562 3.438 6 O -0.531 6.531 7 C -0.153 4.153 8 C -0.056 4.056 9 C -0.137 4.137 10 C -0.030 4.030 11 C -0.126 4.126 12 C 0.507 3.493 13 O -0.508 6.508 14 O -0.336 6.336 15 C 0.075 3.925 16 C 0.062 3.938 17 O -0.391 6.391 18 C 0.195 3.805 19 C -0.516 4.516 20 H 0.066 0.934 21 C 0.057 3.943 22 N -0.898 5.898 23 Si 0.908 3.092 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.003 3.997 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.400 0.600 36 H 0.131 0.869 37 H 0.141 0.859 38 H 0.152 0.848 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.006 0.994 44 H 0.007 0.993 45 H 0.265 0.735 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.474 -11.063 8.153 29.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.006 4.006 4 N -0.382 5.382 5 C 0.350 3.650 6 O -0.408 6.408 7 C -0.157 4.157 8 C -0.075 4.075 9 C -0.155 4.155 10 C -0.048 4.048 11 C -0.128 4.128 12 C 0.351 3.649 13 O -0.397 6.397 14 O -0.251 6.251 15 C 0.002 3.998 16 C -0.016 4.016 17 O -0.311 6.311 18 C 0.121 3.879 19 C -0.554 4.554 20 H 0.084 0.916 21 C -0.144 4.144 22 N -0.537 5.537 23 Si 0.736 3.264 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.016 4.016 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.236 0.764 36 H 0.148 0.852 37 H 0.159 0.841 38 H 0.169 0.831 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.024 0.976 44 H 0.025 0.975 45 H 0.074 0.926 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -26.999 -10.030 8.027 29.900 hybrid contribution 0.853 -0.629 -0.593 1.215 sum -26.146 -10.659 7.434 29.197 Atomic orbital electron populations 1.21679 0.94375 1.02285 1.02461 1.21748 0.97186 0.95671 1.02854 1.21452 0.78970 0.97365 1.02804 1.45897 1.07581 1.08517 1.76228 1.18176 0.86957 0.83769 0.76139 1.90810 1.69775 1.31090 1.49126 1.19734 0.92870 0.94034 1.09015 1.21520 0.94837 0.96810 0.94304 1.21170 0.93680 0.98812 1.01809 1.21908 1.01949 0.90910 0.90035 1.19128 0.92872 0.91648 1.09116 1.21008 0.81714 0.89100 0.73038 1.90834 1.70131 1.32820 1.45964 1.86615 1.19105 1.36263 1.83150 1.23270 0.91739 0.82020 1.02799 1.22330 0.90786 0.98002 0.90490 1.87922 1.28492 1.79860 1.34822 1.20235 0.74996 0.95213 0.97504 1.21010 0.93184 1.39220 1.02028 0.91559 1.24940 0.95705 0.95946 0.97821 1.69952 1.00189 1.47598 1.36011 0.86389 0.77029 0.79877 0.83145 1.20011 1.21139 1.19991 1.21351 0.91953 0.98801 0.89521 0.92277 0.92245 0.92076 0.91167 0.91201 0.91194 0.91212 0.76438 0.85164 0.84087 0.83070 0.90277 0.90213 0.91799 0.93132 0.97599 0.97479 0.92570 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.91 37.16 0.37 -0.14 16 2 C -0.14 -0.49 6.05 -26.73 -0.16 -0.65 16 3 C 0.12 0.73 5.67 -4.04 -0.02 0.70 16 4 N -0.73 -5.00 5.51 -61.24 -0.34 -5.33 16 5 C 0.56 6.01 7.77 -12.32 -0.10 5.91 16 6 O -0.53 -7.77 16.34 5.32 0.09 -7.69 16 7 C -0.15 -1.55 5.87 -105.02 -0.62 -2.17 16 8 C -0.06 -0.40 9.54 -39.10 -0.37 -0.78 16 9 C -0.14 -1.08 10.02 -39.70 -0.40 -1.48 16 10 C -0.03 -0.32 9.61 -39.08 -0.38 -0.70 16 11 C -0.13 -1.64 5.87 -105.04 -0.62 -2.26 16 12 C 0.51 7.96 7.90 34.61 0.27 8.23 16 13 O -0.51 -8.96 16.13 -19.24 -0.31 -9.27 16 14 O -0.34 -5.55 9.43 -43.30 -0.41 -5.96 16 15 C 0.08 1.19 5.85 37.16 0.22 1.41 16 16 C 0.06 1.10 6.33 37.16 0.24 1.34 16 17 O -0.39 -9.33 10.30 -38.80 -0.40 -9.73 16 18 C 0.19 5.25 5.69 36.01 0.20 5.46 16 19 C -0.52 -15.06 9.43 -34.44 -0.32 -15.38 16 20 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 22 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 23 Si 0.91 21.61 29.54 -169.99 -5.02 16.58 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.00 0.03 9.14 -38.76 -0.35 -0.32 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.40 1.55 6.50 -40.82 -0.27 1.28 16 36 H 0.13 0.45 6.39 -52.48 -0.34 0.11 16 37 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.15 1.65 7.60 -52.49 -0.40 1.25 16 39 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.15 2.08 7.23 -52.49 -0.38 1.70 16 LS Contribution 399.69 15.07 6.02 6.02 Total: -1.00 -35.78 399.69 -8.61 -44.39 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -6.84 Total: -3.96 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -2.14 Total: 0.71 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.40 Total: -31.11 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -1.03 Total: -32.64 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.78 -8.61 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815213648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.145 kcal (2) G-P(sol) polarization free energy of solvation -35.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds