Wall clock time and date at job start Tue Mar 31 2020 18:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.34779 * 119.99872 * 180.02562 * 4 3 2 6 6 O 1.21553 * 119.99965 * 0.02562 * 5 4 3 7 7 C 1.47862 * 119.99780 * 180.02562 * 5 4 3 8 8 C 1.39704 * 120.07563 * 359.73245 * 7 5 4 9 9 C 1.38064 * 120.16100 * 179.71595 * 8 7 5 10 10 C 1.38093 * 120.29685 * 0.55580 * 9 8 7 11 11 C 1.39711 * 120.14099 * 359.71819 * 10 9 8 12 12 C 1.47740 * 120.08133 * 180.02562 * 11 10 9 13 13 O 1.21462 * 120.00230 * 179.97438 * 12 11 10 14 14 O 1.34711 * 119.99668 * 359.97438 * 12 11 10 15 15 C 1.45192 * 116.99840 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47434 * 180.02562 * 15 14 12 17 17 O 1.42905 * 109.46975 * 64.99684 * 16 15 14 18 18 C 1.42901 * 113.99429 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.46662 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99543 * 359.97438 * 19 18 17 21 21 C 1.37872 * 119.99850 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00266 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99989 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46924 * 59.99226 * 23 21 19 25 25 H 1.48496 * 109.47180 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46896 * 299.99614 * 23 21 19 27 27 C 1.39287 * 120.07121 * 179.97438 * 7 5 4 28 28 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 32 32 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 33 33 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 34 34 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 35 35 H 0.97000 * 120.00420 * 0.02562 * 4 3 2 36 36 H 1.08004 * 119.92079 * 359.97000 * 8 7 5 37 37 H 1.07997 * 119.85140 * 180.24951 * 9 8 7 38 38 H 1.08000 * 119.92498 * 179.69738 * 10 9 8 39 39 H 1.09008 * 109.47162 * 299.99999 * 15 14 12 40 40 H 1.08998 * 109.47528 * 59.99769 * 15 14 12 41 41 H 1.09003 * 109.47441 * 184.99962 * 16 15 14 42 42 H 1.08999 * 109.47166 * 305.00082 * 16 15 14 43 43 H 1.08994 * 109.47562 * 299.99605 * 18 17 16 44 44 H 1.09005 * 109.47204 * 60.00574 * 18 17 16 45 45 H 0.97004 * 120.00013 * 180.02562 * 22 21 19 46 46 H 1.08002 * 120.14231 * 359.97438 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1788 2.6097 -0.0002 6 8 3.5710 3.6624 0.0011 7 6 5.6574 2.6097 -0.0014 8 6 6.3575 1.4008 0.0027 9 6 7.7381 1.3986 -0.0043 10 6 8.4366 2.5899 -0.0039 11 6 7.7492 3.8062 -0.0022 12 6 8.4978 5.0799 -0.0023 13 8 7.8988 6.1365 -0.0014 14 8 9.8449 5.0693 -0.0035 15 6 10.5141 6.3578 -0.0040 16 6 12.0293 6.1456 -0.0060 17 8 12.4205 5.5158 -1.2277 18 6 13.8245 5.2705 -1.3314 19 6 14.1224 4.6080 -2.6518 20 1 13.3198 4.3952 -3.3424 21 6 15.4194 4.2727 -2.9777 22 7 16.3968 4.5314 -2.1365 23 14 15.7889 3.4521 -4.6147 24 1 15.3591 4.3424 -5.7228 25 1 17.2478 3.1971 -4.7225 26 1 15.0532 2.1649 -4.7003 27 6 6.3554 3.8151 -0.0015 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9900 0.6025 -0.0013 36 1 5.8174 0.4655 0.0072 37 1 8.2743 0.4611 -0.0052 38 1 9.5166 2.5812 -0.0045 39 1 10.2248 6.9171 -0.8939 40 1 10.2264 6.9172 0.8861 41 1 12.5313 7.1091 0.0831 42 1 12.3085 5.5113 0.8353 43 1 14.3641 6.2156 -1.2696 44 1 14.1405 4.6178 -0.5175 45 1 17.3093 4.2958 -2.3660 46 1 5.8189 4.7524 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815213648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:01 Heat of formation + Delta-G solvation = -178.810141 kcal Electronic energy + Delta-G solvation = -27045.833406 eV Core-core repulsion = 22899.333131 eV Total energy + Delta-G solvation = -4146.500275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.84999 -41.12001 -39.37959 -38.68406 -37.47123 -36.86943 -34.94189 -34.00029 -32.63443 -32.23729 -31.46911 -29.03752 -27.49722 -25.81141 -24.67909 -24.48975 -23.42113 -22.61150 -22.37082 -21.40818 -19.57006 -18.71512 -18.43878 -17.95476 -17.47176 -17.31774 -17.08780 -16.99394 -16.80538 -16.42655 -16.25722 -15.62401 -15.53629 -15.48610 -15.05195 -14.88112 -14.53908 -14.26618 -13.86016 -13.79305 -13.66985 -13.34194 -13.23804 -13.05729 -12.93190 -12.92825 -12.69514 -12.59145 -12.41942 -12.04091 -12.01777 -11.80548 -11.74360 -11.71452 -11.29128 -11.18941 -10.88774 -10.40898 -10.27062 -10.24215 -10.04771 -8.31240 -6.43507 -0.57302 -0.17281 1.23559 1.41407 1.44908 1.45654 1.54168 1.80917 2.04799 2.35148 2.70645 3.02744 3.04659 3.42069 3.52922 3.73465 3.87722 3.89614 3.95885 4.01629 4.08280 4.08725 4.20969 4.35361 4.38011 4.45110 4.53452 4.65936 4.66674 4.75459 4.79435 4.86135 4.87187 5.01889 5.13921 5.16204 5.17156 5.19094 5.25775 5.27389 5.29213 5.44849 5.54828 5.62727 5.95754 6.41959 6.48984 6.55546 6.79740 7.08341 7.28034 8.80511 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.001842 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.495959 B =15194.884508 C =16405.162594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.114 3.886 4 N -0.708 5.708 5 C 0.558 3.442 6 O -0.582 6.582 7 C -0.158 4.158 8 C -0.029 4.029 9 C -0.124 4.124 10 C -0.035 4.035 11 C -0.148 4.148 12 C 0.506 3.494 13 O -0.538 6.538 14 O -0.346 6.346 15 C 0.077 3.923 16 C 0.055 3.945 17 O -0.409 6.409 18 C 0.208 3.792 19 C -0.551 4.551 20 H 0.060 0.940 21 C 0.010 3.990 22 N -0.928 5.928 23 Si 0.981 3.019 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.264 1.264 27 C -0.013 4.013 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.418 0.582 36 H 0.181 0.819 37 H 0.180 0.820 38 H 0.147 0.853 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.061 0.939 43 H -0.009 1.009 44 H -0.008 1.008 45 H 0.271 0.729 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.904 -14.610 7.720 31.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.009 4.009 4 N -0.360 5.360 5 C 0.346 3.654 6 O -0.463 6.463 7 C -0.161 4.161 8 C -0.048 4.048 9 C -0.141 4.141 10 C -0.054 4.054 11 C -0.149 4.149 12 C 0.352 3.648 13 O -0.430 6.430 14 O -0.262 6.262 15 C 0.004 3.996 16 C -0.021 4.021 17 O -0.329 6.329 18 C 0.133 3.867 19 C -0.589 4.589 20 H 0.078 0.922 21 C -0.189 4.189 22 N -0.567 5.567 23 Si 0.804 3.196 24 H -0.194 1.194 25 H -0.199 1.199 26 H -0.188 1.188 27 C -0.033 4.033 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.257 0.743 36 H 0.198 0.802 37 H 0.197 0.803 38 H 0.164 0.836 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.009 0.991 44 H 0.010 0.990 45 H 0.080 0.920 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -27.439 -13.624 7.612 31.567 hybrid contribution 0.903 0.442 -0.378 1.074 sum -26.536 -13.182 7.234 30.500 Atomic orbital electron populations 1.21704 0.94379 1.02832 1.02123 1.21699 0.97068 0.93578 1.04069 1.21545 0.78392 0.99253 1.01711 1.45767 1.07961 1.08129 1.74181 1.18345 0.87216 0.84051 0.75745 1.90790 1.70659 1.33093 1.51731 1.19785 0.92690 0.94370 1.09301 1.22002 0.94734 0.97278 0.90750 1.21591 0.93981 0.98927 0.99592 1.22006 1.01917 0.91207 0.90233 1.19020 0.92801 0.91199 1.11910 1.21560 0.81245 0.89983 0.71981 1.90804 1.70389 1.34110 1.47651 1.86606 1.19784 1.36496 1.83340 1.23264 0.90295 0.82176 1.03875 1.22632 0.92276 0.98681 0.88536 1.87868 1.26512 1.80661 1.37893 1.19875 0.76535 0.93865 0.96388 1.21352 0.93804 1.40686 1.03054 0.92191 1.25910 0.95135 0.96034 1.01853 1.70052 1.00742 1.47942 1.37981 0.85268 0.77375 0.79020 0.77962 1.19353 1.19935 1.18816 1.21199 0.91839 0.99061 0.91164 0.92625 0.92716 0.91027 0.89973 0.89837 0.92491 0.92325 0.74284 0.80224 0.80271 0.83552 0.91072 0.87283 0.89904 0.92125 0.99137 0.98983 0.92009 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 71.98 0.71 -0.06 16 2 C -0.13 -0.57 6.05 30.59 0.19 -0.38 16 3 C 0.11 1.28 5.67 86.38 0.49 1.77 16 4 N -0.71 -8.14 5.51 -465.95 -2.57 -10.71 16 5 C 0.56 11.64 7.77 86.79 0.67 12.32 16 6 O -0.58 -17.87 16.34 -3.88 -0.06 -17.94 16 7 C -0.16 -3.04 5.87 -20.12 -0.12 -3.16 16 8 C -0.03 -0.31 9.54 22.58 0.22 -0.09 16 9 C -0.12 -1.49 10.02 22.19 0.22 -1.27 16 10 C -0.04 -0.72 9.61 22.59 0.22 -0.50 16 11 C -0.15 -3.96 5.87 -20.13 -0.12 -4.08 16 12 C 0.51 16.68 7.90 70.33 0.56 17.23 16 13 O -0.54 -20.16 16.13 19.96 0.32 -19.84 16 14 O -0.35 -11.78 9.43 -53.55 -0.51 -12.29 16 15 C 0.08 2.48 5.85 71.98 0.42 2.90 16 16 C 0.06 2.00 6.33 71.98 0.46 2.46 16 17 O -0.41 -19.94 10.30 -145.57 -1.50 -21.44 16 18 C 0.21 11.52 5.69 71.24 0.41 11.92 16 19 C -0.55 -32.60 9.43 25.60 0.24 -32.36 16 20 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 21 C 0.01 0.54 5.46 84.65 0.46 1.00 16 22 N -0.93 -54.86 13.29 21.45 0.28 -54.58 16 23 Si 0.98 43.73 29.54 68.60 2.03 45.76 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 27 C -0.01 -0.35 9.14 22.80 0.21 -0.14 16 28 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.42 1.48 6.50 -92.71 -0.60 0.88 16 36 H 0.18 0.08 6.39 -2.91 -0.02 0.06 16 37 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 38 H 0.15 3.12 7.60 -2.91 -0.02 3.10 16 39 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 40 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 43 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 44 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 45 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 46 H 0.12 3.83 7.23 -2.91 -0.02 3.81 16 Total: -1.00 -81.47 399.69 3.62 -77.85 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.39 Total: 5.63 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 5.23 Total: 7.55 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -2.28 Total: -65.28 kcal Atomic # 8 Polarization: -69.76 SS G_CDS: -1.75 Total: -71.50 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -81.47 3.62 -77.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815213648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.962 kcal (2) G-P(sol) polarization free energy of solvation -81.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds