Wall clock time and date at job start Tue Mar 31 2020 18:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47455 * 2 1 4 4 N 1.46505 * 109.47248 * 119.99711 * 2 1 3 5 5 C 1.34780 * 119.99563 * 84.99707 * 4 2 1 6 6 O 1.21523 * 120.00269 * 0.02562 * 5 4 2 7 7 C 1.48049 * 119.99747 * 180.02562 * 5 4 2 8 8 C 1.39556 * 119.99456 * 180.02562 * 7 5 4 9 9 C 1.37808 * 120.00467 * 180.27748 * 8 7 5 10 10 C 1.39609 * 119.99295 * 359.46537 * 9 8 7 11 11 C 1.47931 * 120.00318 * 180.23325 * 10 9 8 12 12 O 1.21442 * 119.99842 * 180.32185 * 11 10 9 13 13 O 1.34686 * 119.99988 * 0.31941 * 11 10 9 14 14 C 1.45198 * 116.99969 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47154 * 180.02562 * 14 13 11 16 16 O 1.42893 * 109.47316 * 65.00079 * 15 14 13 17 17 C 1.42901 * 114.00120 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47253 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99710 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00198 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00040 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00038 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47062 * 90.00048 * 22 20 18 24 24 H 1.48503 * 109.47161 * 210.00096 * 22 20 18 25 25 H 1.48497 * 109.47344 * 329.99967 * 22 20 18 26 26 C 1.39600 * 119.98949 * 0.55327 * 10 9 8 27 27 C 1.37811 * 119.99139 * 359.70110 * 26 10 9 28 28 H 1.08997 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47165 * 300.00193 * 1 2 3 30 30 H 1.08994 * 109.46824 * 60.00128 * 1 2 3 31 31 H 1.09000 * 109.47165 * 239.99807 * 2 1 3 32 32 H 1.08993 * 109.47646 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47012 * 300.00380 * 3 2 1 34 34 H 1.09000 * 109.47092 * 59.99762 * 3 2 1 35 35 H 0.97000 * 120.00102 * 265.00427 * 4 2 1 36 36 H 1.08002 * 119.99424 * 359.97438 * 8 7 5 37 37 H 1.07998 * 120.00486 * 179.69620 * 9 8 7 38 38 H 1.09004 * 109.47029 * 300.00098 * 14 13 11 39 39 H 1.09001 * 109.47122 * 59.99872 * 14 13 11 40 40 H 1.08999 * 109.47026 * 185.00072 * 15 14 13 41 41 H 1.09007 * 109.47006 * 304.99501 * 15 14 13 42 42 H 1.09002 * 109.47065 * 299.99428 * 17 16 15 43 43 H 1.09001 * 109.46980 * 59.99775 * 17 16 15 44 44 H 0.96995 * 120.00149 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.00006 * 179.68423 * 26 10 9 46 46 H 1.07999 * 119.99448 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -2.0322 1.1944 6 8 1.8584 -2.6690 0.2005 7 6 2.6400 -2.7301 2.4034 8 6 2.7737 -4.1193 2.4013 9 6 3.2271 -4.7697 3.5285 10 6 3.5633 -4.0378 4.6688 11 6 4.0550 -4.7353 5.8772 12 8 4.3419 -4.0991 6.8710 13 8 4.1844 -6.0759 5.8751 14 6 4.6719 -6.6930 7.0957 15 6 4.7525 -8.2088 6.9038 16 8 5.7330 -8.5117 5.9095 17 6 5.8876 -9.9088 5.6522 18 6 6.9403 -10.1110 4.5929 19 1 7.4408 -9.2579 4.1592 20 6 7.2644 -11.3851 4.1774 21 7 6.6546 -12.4240 4.7052 22 14 8.5686 -11.6357 2.8639 23 1 9.8994 -11.7751 3.5079 24 1 8.2620 -12.8655 2.0900 25 1 8.5814 -10.4658 1.9493 26 6 3.4291 -2.6483 4.6708 27 6 2.9707 -1.9988 3.5451 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.2490 -0.1822 1.9895 36 1 2.5171 -4.6851 1.5179 37 1 3.3259 -5.8451 3.5285 38 1 5.6629 -6.3034 7.3290 39 1 3.9900 -6.4658 7.9151 40 1 5.0330 -8.6798 7.8459 41 1 3.7815 -8.5867 6.5837 42 1 6.1915 -10.4154 6.5682 43 1 4.9401 -10.3215 5.3058 44 1 6.8823 -13.3203 4.4126 45 1 3.6844 -2.0824 5.5546 46 1 2.8664 -0.9239 3.5467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815231048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:06 Heat of formation + Delta-G solvation = -152.088751 kcal Electronic energy + Delta-G solvation = -27261.425256 eV Core-core repulsion = 23116.083707 eV Total energy + Delta-G solvation = -4145.341548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.86004 -40.24419 -38.55877 -37.06063 -36.39015 -36.05384 -32.91666 -32.74422 -31.42296 -31.08871 -29.96435 -27.71796 -26.99136 -25.61168 -23.12599 -22.80091 -22.35800 -21.82281 -21.23451 -20.58350 -18.52543 -18.00736 -16.94332 -16.70704 -16.55012 -16.35287 -15.55807 -15.39156 -15.30186 -15.00123 -14.70843 -14.64113 -14.44058 -14.27619 -13.95617 -13.63995 -13.49970 -13.19441 -12.99367 -12.81640 -12.65885 -12.57159 -12.49210 -11.98726 -11.88088 -11.52923 -11.46093 -11.38735 -10.97367 -10.86393 -10.80079 -10.55987 -10.43343 -10.31059 -10.06084 -9.63313 -9.39813 -9.35925 -9.14256 -8.89468 -8.23025 -6.12754 -4.14489 0.05264 0.98920 2.04294 2.60888 2.65947 2.78250 3.30202 3.35323 3.40949 3.54536 4.16238 4.31230 4.32371 4.44246 4.55090 4.56012 4.57353 4.70994 4.74520 4.92700 5.02113 5.07432 5.17015 5.18467 5.23939 5.28515 5.33465 5.41861 5.43721 5.59757 5.62250 5.73846 5.78374 5.82928 5.88423 5.93293 5.98856 6.04600 6.08394 6.40035 6.46666 7.03427 7.03603 7.38080 7.71177 7.77290 7.78533 8.11143 8.50299 8.97910 9.50385 10.98711 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.002054 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.990198 B =13628.030696 C =15310.685974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 C -0.161 4.161 4 N -0.723 5.723 5 C 0.559 3.441 6 O -0.528 6.528 7 C -0.108 4.108 8 C -0.071 4.071 9 C -0.063 4.063 10 C -0.095 4.095 11 C 0.505 3.495 12 O -0.510 6.510 13 O -0.334 6.334 14 C 0.075 3.925 15 C 0.061 3.939 16 O -0.391 6.391 17 C 0.194 3.806 18 C -0.515 4.515 19 H 0.067 0.933 20 C 0.056 3.944 21 N -0.898 5.898 22 Si 0.908 3.092 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.271 1.271 26 C -0.065 4.065 27 C -0.102 4.102 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.400 0.600 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.006 0.994 43 H 0.008 0.992 44 H 0.264 0.736 45 H 0.144 0.856 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.675 27.485 -3.498 30.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.031 3.969 3 C -0.219 4.219 4 N -0.376 5.376 5 C 0.346 3.654 6 O -0.405 6.405 7 C -0.111 4.111 8 C -0.090 4.090 9 C -0.081 4.081 10 C -0.096 4.096 11 C 0.350 3.650 12 O -0.400 6.400 13 O -0.249 6.249 14 C 0.002 3.998 15 C -0.017 4.017 16 O -0.311 6.311 17 C 0.120 3.880 18 C -0.553 4.553 19 H 0.085 0.915 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.735 3.265 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.196 1.196 26 C -0.083 4.083 27 C -0.121 4.121 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.235 0.765 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.024 0.976 43 H 0.026 0.974 44 H 0.074 0.926 45 H 0.162 0.838 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.691 27.120 -4.036 30.213 hybrid contribution 0.669 -0.251 0.146 0.730 sum -12.022 26.868 -3.890 29.691 Atomic orbital electron populations 1.22195 0.95054 1.02861 1.02189 1.20991 0.94346 0.92889 0.88658 1.22089 1.01889 0.94850 1.03089 1.46051 1.67729 1.06788 1.17076 1.18341 0.77478 0.82100 0.87479 1.90792 1.49483 1.65958 1.34272 1.20167 1.02154 0.94779 0.93997 1.21332 0.95999 0.92834 0.98806 1.21680 0.93676 1.01846 0.90909 1.19405 1.03566 0.93673 0.92949 1.21157 0.74862 0.81614 0.87400 1.90806 1.46958 1.67528 1.34702 1.86632 1.76454 1.20465 1.41373 1.23282 1.00003 0.92905 0.83617 1.22330 0.94179 0.91221 0.93936 1.87919 1.57088 1.29068 1.56996 1.20245 0.96559 0.75322 0.95859 1.21041 1.20629 0.92724 1.20927 0.91508 1.24948 0.96956 0.95480 0.97121 1.69957 1.42162 0.98531 1.43092 0.86328 0.81214 0.77736 0.81184 1.20470 1.21047 1.19580 1.21179 0.95830 0.92570 0.98709 1.21147 0.99041 0.99753 0.92123 0.91911 0.92417 0.91475 0.89155 0.91804 0.90726 0.91983 0.76457 0.83543 0.82876 0.90274 0.90219 0.91798 0.93102 0.97593 0.97444 0.92624 0.83806 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.48 37.16 0.35 -0.61 16 2 C 0.14 0.82 3.18 -67.93 -0.22 0.61 16 3 C -0.16 -0.58 9.38 37.16 0.35 -0.23 16 4 N -0.72 -4.82 5.03 -54.68 -0.27 -5.10 16 5 C 0.56 5.65 7.74 -12.23 -0.09 5.56 16 6 O -0.53 -7.23 16.00 5.35 0.09 -7.15 16 7 C -0.11 -1.04 5.88 -104.89 -0.62 -1.66 16 8 C -0.07 -0.77 9.58 -39.25 -0.38 -1.15 16 9 C -0.06 -0.74 9.60 -39.23 -0.38 -1.11 16 10 C -0.09 -1.15 5.88 -104.91 -0.62 -1.77 16 11 C 0.51 7.46 7.90 34.70 0.27 7.74 16 12 O -0.51 -8.21 16.12 -19.22 -0.31 -8.52 16 13 O -0.33 -5.42 9.43 -43.23 -0.41 -5.83 16 14 C 0.08 1.16 5.85 37.16 0.22 1.38 16 15 C 0.06 1.09 6.33 37.16 0.24 1.32 16 16 O -0.39 -9.32 10.30 -38.80 -0.40 -9.72 16 17 C 0.19 5.27 5.69 36.01 0.20 5.47 16 18 C -0.52 -15.13 9.43 -34.44 -0.32 -15.46 16 19 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 22 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.06 -0.62 9.58 -39.23 -0.38 -1.00 16 27 C -0.10 -0.78 9.53 -39.25 -0.37 -1.16 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.72 7.58 -51.93 -0.39 0.32 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.40 1.59 6.62 -40.82 -0.27 1.32 16 36 H 0.15 1.58 7.64 -52.49 -0.40 1.18 16 37 H 0.15 1.84 7.60 -52.49 -0.40 1.44 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 42 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.14 1.23 7.64 -52.49 -0.40 0.83 16 46 H 0.13 0.53 6.39 -52.49 -0.34 0.20 16 LS Contribution 398.80 15.07 6.01 6.01 Total: -1.00 -35.24 398.80 -8.23 -43.47 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -6.82 Total: -3.49 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.84 Total: -0.55 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 0.46 Total: -31.08 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.03 Total: -31.21 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.24 -8.23 -43.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815231048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.615 kcal (2) G-P(sol) polarization free energy of solvation -35.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds