Wall clock time and date at job start Tue Mar 31 2020 18:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47455 * 2 1 4 4 N 1.46505 * 109.47248 * 119.99711 * 2 1 3 5 5 C 1.34780 * 119.99563 * 84.99707 * 4 2 1 6 6 O 1.21523 * 120.00269 * 0.02562 * 5 4 2 7 7 C 1.48049 * 119.99747 * 180.02562 * 5 4 2 8 8 C 1.39556 * 119.99456 * 180.02562 * 7 5 4 9 9 C 1.37808 * 120.00467 * 180.27748 * 8 7 5 10 10 C 1.39609 * 119.99295 * 359.46537 * 9 8 7 11 11 C 1.47931 * 120.00318 * 180.23325 * 10 9 8 12 12 O 1.21442 * 119.99842 * 180.32185 * 11 10 9 13 13 O 1.34686 * 119.99988 * 0.31941 * 11 10 9 14 14 C 1.45198 * 116.99969 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47154 * 180.02562 * 14 13 11 16 16 O 1.42893 * 109.47316 * 65.00079 * 15 14 13 17 17 C 1.42901 * 114.00120 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47253 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99710 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00198 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00040 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00038 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47062 * 90.00048 * 22 20 18 24 24 H 1.48503 * 109.47161 * 210.00096 * 22 20 18 25 25 H 1.48497 * 109.47344 * 329.99967 * 22 20 18 26 26 C 1.39600 * 119.98949 * 0.55327 * 10 9 8 27 27 C 1.37811 * 119.99139 * 359.70110 * 26 10 9 28 28 H 1.08997 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47165 * 300.00193 * 1 2 3 30 30 H 1.08994 * 109.46824 * 60.00128 * 1 2 3 31 31 H 1.09000 * 109.47165 * 239.99807 * 2 1 3 32 32 H 1.08993 * 109.47646 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47012 * 300.00380 * 3 2 1 34 34 H 1.09000 * 109.47092 * 59.99762 * 3 2 1 35 35 H 0.97000 * 120.00102 * 265.00427 * 4 2 1 36 36 H 1.08002 * 119.99424 * 359.97438 * 8 7 5 37 37 H 1.07998 * 120.00486 * 179.69620 * 9 8 7 38 38 H 1.09004 * 109.47029 * 300.00098 * 14 13 11 39 39 H 1.09001 * 109.47122 * 59.99872 * 14 13 11 40 40 H 1.08999 * 109.47026 * 185.00072 * 15 14 13 41 41 H 1.09007 * 109.47006 * 304.99501 * 15 14 13 42 42 H 1.09002 * 109.47065 * 299.99428 * 17 16 15 43 43 H 1.09001 * 109.46980 * 59.99775 * 17 16 15 44 44 H 0.96995 * 120.00149 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.00006 * 179.68423 * 26 10 9 46 46 H 1.07999 * 119.99448 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -2.0322 1.1944 6 8 1.8584 -2.6690 0.2005 7 6 2.6400 -2.7301 2.4034 8 6 2.7737 -4.1193 2.4013 9 6 3.2271 -4.7697 3.5285 10 6 3.5633 -4.0378 4.6688 11 6 4.0550 -4.7353 5.8772 12 8 4.3419 -4.0991 6.8710 13 8 4.1844 -6.0759 5.8751 14 6 4.6719 -6.6930 7.0957 15 6 4.7525 -8.2088 6.9038 16 8 5.7330 -8.5117 5.9095 17 6 5.8876 -9.9088 5.6522 18 6 6.9403 -10.1110 4.5929 19 1 7.4408 -9.2579 4.1592 20 6 7.2644 -11.3851 4.1774 21 7 6.6546 -12.4240 4.7052 22 14 8.5686 -11.6357 2.8639 23 1 9.8994 -11.7751 3.5079 24 1 8.2620 -12.8655 2.0900 25 1 8.5814 -10.4658 1.9493 26 6 3.4291 -2.6483 4.6708 27 6 2.9707 -1.9988 3.5451 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.2490 -0.1822 1.9895 36 1 2.5171 -4.6851 1.5179 37 1 3.3259 -5.8451 3.5285 38 1 5.6629 -6.3034 7.3290 39 1 3.9900 -6.4658 7.9151 40 1 5.0330 -8.6798 7.8459 41 1 3.7815 -8.5867 6.5837 42 1 6.1915 -10.4154 6.5682 43 1 4.9401 -10.3215 5.3058 44 1 6.8823 -13.3203 4.4126 45 1 3.6844 -2.0824 5.5546 46 1 2.8664 -0.9239 3.5467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815231048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:04 Heat of formation + Delta-G solvation = -174.445849 kcal Electronic energy + Delta-G solvation = -27262.394732 eV Core-core repulsion = 23116.083707 eV Total energy + Delta-G solvation = -4146.311025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.83079 -41.19736 -39.44774 -38.68073 -37.45774 -37.03798 -34.95785 -33.65165 -32.25244 -31.98531 -31.26484 -29.04632 -28.08901 -26.56389 -24.59394 -24.04380 -23.68806 -22.87807 -21.97939 -21.44179 -19.37450 -18.98383 -18.70084 -17.97171 -17.91616 -17.39370 -17.06691 -16.46144 -16.31239 -16.24753 -16.02624 -15.68864 -15.58857 -15.11118 -15.05540 -14.66054 -14.49271 -14.31403 -13.95040 -13.80052 -13.61408 -13.50045 -13.21804 -13.16732 -13.04288 -12.92930 -12.71711 -12.49237 -12.30402 -12.25936 -12.04238 -11.90767 -11.78006 -11.71540 -11.29210 -11.15253 -10.90476 -10.41193 -10.27912 -10.18650 -10.09737 -8.33276 -6.45134 -0.83279 0.20226 1.06568 1.39482 1.41904 1.50640 1.54014 1.86572 2.01785 2.33509 2.70378 3.00659 3.05141 3.37149 3.60794 3.65553 3.79531 3.90656 3.96073 4.09644 4.11692 4.14438 4.19932 4.32498 4.39983 4.48734 4.54354 4.64128 4.73576 4.76531 4.84864 4.86534 4.93781 4.96276 5.00974 5.10131 5.16370 5.18518 5.28047 5.30185 5.34030 5.46862 5.53422 5.58811 5.94303 6.44206 6.48203 6.56163 6.78754 7.10142 7.26311 8.78742 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.002054 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.990198 B =13628.030696 C =15310.685974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 C -0.154 4.154 4 N -0.704 5.704 5 C 0.557 3.443 6 O -0.573 6.573 7 C -0.108 4.108 8 C -0.082 4.082 9 C -0.071 4.071 10 C -0.112 4.112 11 C 0.506 3.494 12 O -0.526 6.526 13 O -0.352 6.352 14 C 0.079 3.921 15 C 0.052 3.948 16 O -0.409 6.409 17 C 0.208 3.792 18 C -0.550 4.550 19 H 0.059 0.941 20 C 0.007 3.993 21 N -0.928 5.928 22 Si 0.981 3.019 23 H -0.267 1.267 24 H -0.273 1.273 25 H -0.267 1.267 26 C -0.058 4.058 27 C -0.079 4.079 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.416 0.584 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.057 0.943 42 H -0.007 1.007 43 H -0.010 1.010 44 H 0.271 0.729 45 H 0.161 0.839 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.496 30.300 -3.557 32.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 C -0.211 4.211 4 N -0.358 5.358 5 C 0.344 3.656 6 O -0.453 6.453 7 C -0.111 4.111 8 C -0.101 4.101 9 C -0.090 4.090 10 C -0.114 4.114 11 C 0.352 3.648 12 O -0.417 6.417 13 O -0.268 6.268 14 C 0.006 3.994 15 C -0.024 4.024 16 O -0.329 6.329 17 C 0.133 3.867 18 C -0.587 4.587 19 H 0.077 0.923 20 C -0.191 4.191 21 N -0.567 5.567 22 Si 0.804 3.196 23 H -0.192 1.192 24 H -0.198 1.198 25 H -0.191 1.191 26 C -0.076 4.076 27 C -0.097 4.097 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.255 0.745 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.093 0.907 39 H 0.131 0.869 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.011 0.989 43 H 0.008 0.992 44 H 0.080 0.920 45 H 0.178 0.822 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.523 29.986 -4.059 32.749 hybrid contribution 0.519 -1.030 0.190 1.169 sum -12.004 28.956 -3.869 31.583 Atomic orbital electron populations 1.22165 0.94759 1.01425 1.03593 1.21104 0.94587 0.94197 0.87447 1.22045 1.01887 0.92749 1.04441 1.45973 1.66154 1.05649 1.17983 1.18433 0.77202 0.83062 0.86905 1.90777 1.51640 1.67087 1.35769 1.20265 1.01806 0.94305 0.94703 1.21300 0.96623 0.93831 0.98298 1.21524 0.94701 1.01337 0.91405 1.19439 1.05124 0.94829 0.91967 1.21563 0.74298 0.80930 0.88036 1.90784 1.47960 1.67507 1.35431 1.86629 1.76706 1.21668 1.41844 1.23272 1.00786 0.90989 0.84399 1.22666 0.93048 0.93367 0.93344 1.87862 1.59092 1.26898 1.59077 1.19871 0.95136 0.76951 0.94738 1.21375 1.21888 0.93169 1.22289 0.92265 1.25923 0.99089 0.94855 0.99259 1.70052 1.43310 0.99140 1.44195 0.85215 0.78315 0.77987 0.78105 1.19211 1.19832 1.19123 1.21420 0.95002 0.91342 0.99839 1.21529 0.96349 1.01708 0.90117 0.94699 0.90949 0.90183 0.91487 0.91732 0.89786 0.90250 0.74517 0.84329 0.84262 0.90692 0.86930 0.89790 0.92507 0.98902 0.99229 0.92004 0.82190 0.80322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.48 71.98 0.68 -0.98 16 2 C 0.13 1.38 3.18 44.99 0.14 1.53 16 3 C -0.15 -0.64 9.38 71.98 0.68 0.04 16 4 N -0.70 -7.86 5.03 -445.21 -2.24 -10.10 16 5 C 0.56 10.82 7.74 86.85 0.67 11.50 16 6 O -0.57 -16.15 16.00 -3.79 -0.06 -16.21 16 7 C -0.11 -1.96 5.88 -20.04 -0.12 -2.08 16 8 C -0.08 -1.84 9.58 22.49 0.22 -1.62 16 9 C -0.07 -1.74 9.60 22.50 0.22 -1.52 16 10 C -0.11 -2.69 5.88 -20.05 -0.12 -2.81 16 11 C 0.51 14.88 7.90 70.39 0.56 15.43 16 12 O -0.53 -16.47 16.12 20.02 0.32 -16.14 16 13 O -0.35 -11.62 9.43 -53.30 -0.50 -12.12 16 14 C 0.08 2.40 5.85 71.98 0.42 2.82 16 15 C 0.05 1.88 6.33 71.98 0.46 2.34 16 16 O -0.41 -20.06 10.30 -145.57 -1.50 -21.56 16 17 C 0.21 11.65 5.69 71.24 0.41 12.06 16 18 C -0.55 -33.04 9.43 25.60 0.24 -32.80 16 19 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 20 C 0.01 0.43 5.46 84.65 0.46 0.90 16 21 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 22 Si 0.98 44.83 29.54 68.60 2.03 46.86 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 26 C -0.06 -0.98 9.58 22.50 0.22 -0.77 16 27 C -0.08 -0.97 9.53 22.49 0.21 -0.76 16 28 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 1.05 7.58 -2.39 -0.02 1.04 16 32 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.42 1.70 6.62 -92.71 -0.61 1.08 16 36 H 0.14 3.26 7.64 -2.91 -0.02 3.24 16 37 H 0.14 3.68 7.60 -2.91 -0.02 3.66 16 38 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 39 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 42 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 44 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 45 H 0.16 2.24 7.64 -2.91 -0.02 2.22 16 46 H 0.18 0.50 6.39 -2.91 -0.02 0.48 16 Total: -1.00 -78.52 398.80 4.05 -74.47 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.38 Total: 6.95 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 5.34 Total: 3.26 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -1.95 Total: -65.51 kcal Atomic # 8 Polarization: -64.29 SS G_CDS: -1.74 Total: -66.03 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -78.52 4.05 -74.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815231048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.973 kcal (2) G-P(sol) polarization free energy of solvation -78.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds