Wall clock time and date at job start Tue Mar 31 2020 19:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47023 * 2 1 4 4 O 1.42898 * 109.47580 * 120.00108 * 2 1 3 5 5 C 1.42894 * 113.99765 * 89.99944 * 4 2 1 6 6 C 1.53005 * 109.47255 * 180.02562 * 5 4 2 7 7 H 1.08995 * 109.47649 * 185.00027 * 6 5 4 8 8 C 1.50697 * 109.46974 * 305.00478 * 6 5 4 9 9 O 1.20826 * 120.00454 * 119.99833 * 8 6 5 10 10 O 1.34233 * 119.99873 * 299.99362 * 8 6 5 11 11 N 1.46501 * 109.46923 * 64.99885 * 6 5 4 12 12 C 1.46499 * 120.00296 * 300.00566 * 11 6 5 13 13 C 1.34773 * 119.99782 * 120.00167 * 11 6 5 14 14 O 1.21548 * 120.00478 * 4.69709 * 13 11 6 15 15 C 1.47887 * 119.99883 * 184.69896 * 13 11 6 16 16 C 1.39918 * 120.02657 * 22.06439 * 15 13 11 17 17 C 1.38329 * 120.35684 * 179.71812 * 16 15 13 18 18 C 1.37758 * 120.41428 * 0.56312 * 17 16 15 19 19 C 1.40748 * 120.03476 * 359.71382 * 18 17 16 20 20 C 1.41443 * 120.17329 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99947 * 28.87988 * 20 19 18 22 22 C 1.39938 * 119.99938 * 208.86844 * 20 19 18 23 23 N 1.30827 * 120.00173 * 10.24368 * 22 20 19 24 24 Si 1.86803 * 119.99832 * 190.24079 * 22 20 19 25 25 H 1.48504 * 109.46870 * 90.00351 * 24 22 20 26 26 H 1.48502 * 109.47038 * 210.00222 * 24 22 20 27 27 H 1.48497 * 109.47028 * 330.00446 * 24 22 20 28 28 C 1.39000 * 120.02465 * 202.33907 * 15 13 11 29 29 H 1.08998 * 109.47413 * 59.99838 * 1 2 3 30 30 H 1.08997 * 109.46707 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46719 * 299.99458 * 1 2 3 32 32 H 1.08996 * 109.46973 * 240.00710 * 2 1 3 33 33 H 1.08997 * 109.47309 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47158 * 300.00318 * 3 2 1 35 35 H 1.09005 * 109.46742 * 59.99935 * 3 2 1 36 36 H 1.09000 * 109.47262 * 60.00111 * 5 4 2 37 37 H 1.09001 * 109.47271 * 299.99931 * 5 4 2 38 38 H 0.96697 * 117.00007 * 180.02562 * 10 8 6 39 39 H 1.09000 * 109.47735 * 84.54662 * 12 11 6 40 40 H 1.08996 * 109.47450 * 204.55103 * 12 11 6 41 41 H 1.09001 * 109.46700 * 324.54866 * 12 11 6 42 42 H 1.08000 * 119.82179 * 359.97438 * 16 15 13 43 43 H 1.08006 * 119.79261 * 180.25616 * 17 16 15 44 44 H 1.07998 * 119.98075 * 179.74173 * 18 17 16 45 45 H 0.96993 * 120.00064 * 179.97438 * 23 22 20 46 46 H 1.08003 * 120.20229 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0065 -0.6736 1.1667 5 6 2.2002 -2.0781 0.9885 6 6 2.7081 -2.6927 2.2944 7 1 2.9403 -3.7456 2.1343 8 6 3.9507 -1.9666 2.7413 9 8 3.9708 -1.4057 3.8113 10 8 5.0352 -1.9430 1.9507 11 7 1.6744 -2.5718 3.3254 12 6 1.1874 -1.2485 3.7229 13 6 1.1715 -3.6780 3.9083 14 8 1.6344 -4.7697 3.6413 15 6 0.0563 -3.5636 4.8728 16 6 -0.7755 -2.4387 4.8511 17 6 -1.8242 -2.3274 5.7463 18 6 -2.0548 -3.3166 6.6768 19 6 -1.2251 -4.4528 6.7176 20 6 -1.4596 -5.4705 7.6714 21 1 -2.4601 -5.6472 8.0377 22 6 -0.3952 -6.2487 8.1403 23 7 0.8365 -5.9118 7.8558 24 14 -0.7331 -7.7685 9.1726 25 1 -0.8786 -8.9487 8.2830 26 1 0.3969 -7.9914 10.1100 27 1 -1.9862 -7.5735 9.9452 28 6 -0.1629 -4.5708 5.8053 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 2.9320 -2.2466 0.1984 37 1 1.2539 -2.5433 0.7124 38 1 5.8085 -1.4650 2.2803 39 1 0.4029 -0.9289 3.0369 40 1 0.7869 -1.2978 4.7354 41 1 2.0102 -0.5343 3.6920 42 1 -0.6004 -1.6551 4.1288 43 1 -2.4632 -1.4570 5.7188 44 1 -2.8731 -3.2205 7.3752 45 1 1.5742 -6.4509 8.1811 46 1 0.4792 -5.4390 5.8283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827011578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:36 Heat of formation + Delta-G solvation = -149.808849 kcal Electronic energy + Delta-G solvation = -29964.901334 eV Core-core repulsion = 25819.658650 eV Total energy + Delta-G solvation = -4145.242684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.03575 -40.75926 -39.38358 -38.81999 -37.36202 -36.60596 -35.57256 -33.95013 -32.49663 -31.31938 -30.78212 -28.20387 -27.94769 -27.05390 -25.71607 -24.37927 -22.81976 -22.20819 -22.06515 -20.54718 -19.54495 -19.01192 -18.37962 -17.89178 -17.55670 -17.22656 -16.96149 -16.59417 -16.47799 -16.15035 -15.86968 -15.53885 -14.99415 -14.96633 -14.58021 -14.43971 -14.18846 -14.05874 -13.86969 -13.61561 -13.46600 -13.33911 -13.16369 -12.95870 -12.88001 -12.81483 -12.69950 -12.43263 -12.32553 -12.28386 -11.96882 -11.91305 -11.78057 -11.53395 -11.35971 -11.11746 -10.79237 -10.51349 -9.89571 -9.44390 -9.29385 -8.60365 -6.39506 0.36030 1.01175 1.10269 1.36267 1.45251 1.48420 1.50865 1.98437 2.20038 2.21042 2.57033 2.78402 3.55625 3.67697 3.76571 4.00557 4.07286 4.17177 4.20640 4.24177 4.35213 4.38093 4.47720 4.51264 4.65890 4.72176 4.81784 4.88508 4.92099 4.97672 4.99662 5.04119 5.09533 5.18395 5.30754 5.35561 5.37034 5.40580 5.52656 5.54124 5.81580 5.94023 6.05535 6.19012 6.24606 6.31123 6.60582 6.89195 6.90380 6.94949 7.07063 8.35704 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017009 B = 0.003238 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.834779 B = 8645.989209 C = 9658.380213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.077 3.923 3 C -0.146 4.146 4 O -0.394 6.394 5 C 0.070 3.930 6 C 0.146 3.854 7 H 0.141 0.859 8 C 0.485 3.515 9 O -0.535 6.535 10 O -0.501 6.501 11 N -0.586 5.586 12 C 0.083 3.917 13 C 0.566 3.434 14 O -0.583 6.583 15 C -0.141 4.141 16 C -0.204 4.204 17 C -0.102 4.102 18 C -0.207 4.207 19 C 0.064 3.936 20 C -0.498 4.498 21 H 0.083 0.917 22 C 0.025 3.975 23 N -0.839 5.839 24 Si 0.986 3.014 25 H -0.265 1.265 26 H -0.271 1.271 27 H -0.251 1.251 28 C -0.121 4.121 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.429 0.571 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.158 0.842 43 H 0.140 0.860 44 H 0.110 0.890 45 H 0.283 0.717 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 12.821 -17.108 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.020 3.980 3 C -0.203 4.203 4 O -0.314 6.314 5 C -0.007 4.007 6 C 0.041 3.959 7 H 0.159 0.841 8 C 0.326 3.674 9 O -0.424 6.424 10 O -0.314 6.314 11 N -0.318 5.318 12 C -0.058 4.058 13 C 0.359 3.641 14 O -0.464 6.464 15 C -0.144 4.144 16 C -0.223 4.223 17 C -0.120 4.120 18 C -0.226 4.226 19 C 0.062 3.938 20 C -0.528 4.528 21 H 0.101 0.899 22 C -0.188 4.188 23 N -0.466 5.466 24 Si 0.807 3.193 25 H -0.190 1.190 26 H -0.196 1.196 27 H -0.175 1.175 28 C -0.142 4.142 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.092 0.908 38 H 0.291 0.709 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.175 0.825 43 H 0.158 0.842 44 H 0.128 0.872 45 H 0.094 0.906 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.035 12.268 -16.890 21.262 hybrid contribution 0.693 -0.781 0.946 1.409 sum 4.728 11.487 -15.944 20.212 Atomic orbital electron populations 1.22300 0.95559 1.02238 1.03105 1.22287 0.94004 0.94093 0.87615 1.21850 1.01472 0.93950 1.03008 1.87986 1.87057 1.19011 1.37322 1.22768 1.01927 0.82715 0.93320 1.20790 0.84022 1.02161 0.88975 0.84142 1.23567 0.85045 0.77153 0.81630 1.90716 1.83505 1.43731 1.24492 1.84433 1.24625 1.72082 1.50246 1.47378 1.37866 1.07571 1.39024 1.22527 1.00330 0.81744 1.01153 1.18934 0.82385 0.83222 0.79543 1.90646 1.62835 1.28445 1.64491 1.19625 0.97786 0.98469 0.98500 1.21808 0.97895 0.98384 1.04183 1.20986 0.97272 0.98533 0.95210 1.21500 1.03488 0.95018 1.02635 1.17934 0.91637 0.92843 0.91345 1.19845 0.95740 1.15371 1.21827 0.89900 1.26839 0.93959 1.01006 0.96961 1.69874 1.00494 1.37328 1.38920 0.85136 0.79274 0.76981 0.77897 1.19039 1.19621 1.17453 1.21435 1.00322 0.97900 0.94501 0.90036 0.93073 0.92400 0.90611 0.92402 0.89403 0.92697 0.88120 0.90844 0.70917 0.89881 0.90076 0.90867 0.82521 0.84200 0.87233 0.90621 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.53 71.98 0.69 -1.73 16 2 C 0.08 1.10 3.34 30.60 0.10 1.20 16 3 C -0.15 -1.80 9.56 71.98 0.69 -1.11 16 4 O -0.39 -7.90 7.21 -148.98 -1.07 -8.97 16 5 C 0.07 1.40 5.43 71.98 0.39 1.79 16 6 C 0.15 4.16 3.08 44.25 0.14 4.30 16 7 H 0.14 4.21 6.91 -2.39 -0.02 4.19 16 8 C 0.48 13.61 6.92 71.24 0.49 14.11 16 9 O -0.54 -18.99 15.17 21.96 0.33 -18.66 16 10 O -0.50 -9.55 13.35 -51.45 -0.69 -10.24 16 11 N -0.59 -20.68 2.54 -830.18 -2.10 -22.78 16 12 C 0.08 2.58 6.60 127.77 0.84 3.42 16 13 C 0.57 25.79 7.52 86.80 0.65 26.44 16 14 O -0.58 -29.92 15.89 -3.87 -0.06 -29.98 16 15 C -0.14 -6.86 5.56 -20.13 -0.11 -6.97 16 16 C -0.20 -8.24 7.56 22.70 0.17 -8.07 16 17 C -0.10 -4.09 10.01 22.18 0.22 -3.87 16 18 C -0.21 -9.76 9.78 22.77 0.22 -9.53 16 19 C 0.06 3.56 5.55 -21.32 -0.12 3.44 16 20 C -0.50 -27.58 9.06 23.47 0.21 -27.37 16 21 H 0.08 4.33 7.87 -2.91 -0.02 4.31 16 22 C 0.03 1.34 5.26 85.25 0.45 1.79 16 23 N -0.84 -47.95 10.82 21.82 0.24 -47.71 16 24 Si 0.99 40.65 29.57 68.60 2.03 42.68 16 25 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 26 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 27 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 28 C -0.12 -6.86 8.19 23.01 0.19 -6.67 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.79 7.87 -2.39 -0.02 0.77 16 31 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.08 0.85 7.79 -2.39 -0.02 0.83 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.10 1.46 8.08 -2.39 -0.02 1.44 16 37 H 0.07 1.44 7.87 -2.39 -0.02 1.42 16 38 H 0.43 4.58 9.10 -74.06 -0.67 3.91 16 39 H 0.08 2.14 6.75 -2.39 -0.02 2.12 16 40 H 0.08 2.82 4.95 -2.39 -0.01 2.81 16 41 H 0.07 2.28 5.87 -2.39 -0.01 2.27 16 42 H 0.16 5.09 4.13 -2.91 -0.01 5.08 16 43 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 44 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 45 H 0.28 14.98 8.30 -92.71 -0.77 14.21 16 46 H 0.10 6.17 5.95 -2.91 -0.02 6.16 16 Total: -1.00 -75.39 377.09 4.25 -71.14 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.35 Total: 33.35 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 5.23 Total: -8.83 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -1.87 Total: -70.50 kcal Atomic # 8 Polarization: -66.36 SS G_CDS: -1.49 Total: -67.85 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -75.39 4.25 -71.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827011578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.666 kcal (2) G-P(sol) polarization free energy of solvation -75.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds