Wall clock time and date at job start Tue Mar 31 2020 19:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.47175 * 2 1 4 4 O 1.42900 * 109.47107 * 120.00069 * 2 1 3 5 5 C 1.42903 * 114.00263 * 89.99932 * 4 2 1 6 6 C 1.52997 * 109.47389 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.47344 * 174.99645 * 6 5 4 8 8 C 1.50699 * 109.46869 * 55.00023 * 6 5 4 9 9 O 1.20829 * 120.00292 * 239.99815 * 8 6 5 10 10 O 1.34235 * 120.00097 * 60.00088 * 8 6 5 11 11 N 1.46494 * 109.47259 * 295.00181 * 6 5 4 12 12 C 1.46500 * 120.00018 * 59.99465 * 11 6 5 13 13 C 1.34775 * 119.99854 * 239.99870 * 11 6 5 14 14 O 1.21547 * 120.00100 * 7.16250 * 13 11 6 15 15 C 1.47887 * 119.99870 * 187.15663 * 13 11 6 16 16 C 1.39917 * 120.02915 * 323.86862 * 15 13 11 17 17 C 1.38332 * 120.36094 * 179.71177 * 16 15 13 18 18 C 1.37749 * 120.40818 * 0.56548 * 17 16 15 19 19 C 1.40751 * 120.04225 * 359.70979 * 18 17 16 20 20 C 1.41432 * 120.17792 * 180.02562 * 19 18 17 21 21 H 1.08006 * 120.00285 * 149.11164 * 20 19 18 22 22 C 1.39935 * 120.00228 * 329.10902 * 20 19 18 23 23 N 1.30830 * 120.00000 * 155.21934 * 22 20 19 24 24 Si 1.86800 * 120.00041 * 335.22010 * 22 20 19 25 25 H 1.48493 * 109.47343 * 87.22151 * 24 22 20 26 26 H 1.48499 * 109.47167 * 207.22428 * 24 22 20 27 27 H 1.48501 * 109.47075 * 327.22351 * 24 22 20 28 28 C 1.38994 * 120.02378 * 144.13792 * 15 13 11 29 29 H 1.08995 * 109.46675 * 299.99854 * 1 2 3 30 30 H 1.08993 * 109.47066 * 60.00113 * 1 2 3 31 31 H 1.09001 * 109.46625 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47123 * 239.99599 * 2 1 3 33 33 H 1.08998 * 109.47430 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47169 * 300.00437 * 3 2 1 35 35 H 1.09004 * 109.47141 * 60.00216 * 3 2 1 36 36 H 1.08994 * 109.47043 * 59.99526 * 5 4 2 37 37 H 1.09000 * 109.46801 * 300.00423 * 5 4 2 38 38 H 0.96703 * 116.99476 * 179.97438 * 10 8 6 39 39 H 1.08992 * 109.47364 * 265.54834 * 12 11 6 40 40 H 1.09002 * 109.46889 * 145.54881 * 12 11 6 41 41 H 1.08996 * 109.47094 * 25.55519 * 12 11 6 42 42 H 1.08008 * 119.81944 * 359.97438 * 16 15 13 43 43 H 1.07995 * 119.79501 * 180.25388 * 17 16 15 44 44 H 1.07999 * 119.98052 * 179.74121 * 18 17 16 45 45 H 0.97005 * 119.99941 * 179.97438 * 23 22 20 46 46 H 1.08005 * 120.20528 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2002 -2.0782 0.9887 6 6 2.7092 -2.6925 2.2942 7 1 2.7724 -3.7752 2.1859 8 6 1.7578 -2.3543 3.4129 9 8 2.1483 -1.7278 4.3695 10 8 0.4765 -2.7489 3.3467 11 7 4.0363 -2.1542 2.6023 12 6 4.2155 -0.7131 2.7957 13 6 5.0925 -2.9848 2.7078 14 8 4.9727 -4.1598 2.4207 15 6 6.3972 -2.4665 3.1728 16 6 6.8104 -1.1806 2.8072 17 6 8.0267 -0.6867 3.2432 18 6 8.8503 -1.4589 4.0325 19 6 8.4542 -2.7569 4.4057 20 6 9.2974 -3.5520 5.2164 21 1 8.8690 -4.2721 5.8979 22 6 10.6867 -3.4058 5.1356 23 7 11.4395 -3.7363 6.1532 24 14 11.4664 -2.7387 3.5747 25 1 11.5039 -1.2554 3.6349 26 1 12.8496 -3.2641 3.4487 27 1 10.6655 -3.1662 2.3995 28 6 7.2164 -3.2584 3.9688 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 2.9320 -2.2467 0.1987 37 1 1.2539 -2.5433 0.7124 38 1 -0.0957 -2.5087 4.0884 39 1 4.5251 -0.2562 1.8559 40 1 4.9803 -0.5405 3.5530 41 1 3.2745 -0.2706 3.1223 42 1 6.1742 -0.5688 2.1847 43 1 8.3347 0.3086 2.9589 44 1 9.8004 -1.0679 4.3655 45 1 12.4027 -3.6353 6.0971 46 1 6.9034 -4.2530 4.2502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827011585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:40 Heat of formation + Delta-G solvation = -138.428950 kcal Electronic energy + Delta-G solvation = -29711.579848 eV Core-core repulsion = 25566.830633 eV Total energy + Delta-G solvation = -4144.749215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.87070 -39.43767 -38.59110 -37.31960 -36.30559 -35.33612 -33.78114 -33.05985 -31.29919 -30.18125 -29.53252 -27.53221 -26.64364 -25.21694 -24.76714 -23.11174 -21.63827 -21.11654 -20.67667 -19.31569 -18.32931 -17.59925 -17.17867 -16.98826 -16.29513 -15.95003 -15.91401 -15.32680 -15.22933 -14.85173 -14.67722 -14.53340 -13.80973 -13.64379 -13.41113 -13.08176 -13.03466 -12.76304 -12.74466 -12.58011 -12.51653 -12.40781 -12.19207 -11.98976 -11.82953 -11.71994 -11.48326 -11.15977 -11.02314 -10.88594 -10.81903 -10.64402 -10.52122 -10.03500 -9.90145 -9.70188 -9.44288 -9.02846 -8.61234 -7.85288 -7.68454 -7.01590 -4.50715 1.98256 2.14025 2.53311 2.55689 3.08777 3.17497 3.22954 3.25963 3.31122 3.48633 3.95361 4.42802 4.46094 4.66903 4.71943 4.86916 4.91498 4.96366 5.03322 5.27152 5.29523 5.32245 5.39231 5.47052 5.51266 5.55148 5.58775 5.81940 5.86333 5.92798 5.96736 6.15477 6.24214 6.41531 6.46435 6.55005 6.67139 6.73811 6.89438 7.00402 7.23625 7.39726 7.54549 7.57674 7.79877 7.79985 7.98202 8.30969 8.47109 8.57505 8.74125 10.00685 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.003008 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.286186 B = 9306.853159 C =10076.425221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.081 3.919 3 C -0.150 4.150 4 O -0.377 6.377 5 C 0.061 3.939 6 C 0.157 3.843 7 H 0.148 0.852 8 C 0.476 3.524 9 O -0.495 6.495 10 O -0.517 6.517 11 N -0.595 5.595 12 C 0.088 3.912 13 C 0.572 3.428 14 O -0.545 6.545 15 C -0.102 4.102 16 C -0.224 4.224 17 C -0.085 4.085 18 C -0.221 4.221 19 C 0.084 3.916 20 C -0.451 4.451 21 H 0.092 0.908 22 C 0.089 3.911 23 N -0.798 5.798 24 Si 0.905 3.095 25 H -0.263 1.263 26 H -0.287 1.287 27 H -0.249 1.249 28 C -0.142 4.142 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.409 0.591 39 H 0.054 0.946 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.286 0.714 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.011 7.986 -11.729 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.024 3.976 3 C -0.207 4.207 4 O -0.297 6.297 5 C -0.017 4.017 6 C 0.050 3.950 7 H 0.165 0.835 8 C 0.315 3.685 9 O -0.381 6.381 10 O -0.328 6.328 11 N -0.329 5.329 12 C -0.054 4.054 13 C 0.365 3.635 14 O -0.423 6.423 15 C -0.105 4.105 16 C -0.243 4.243 17 C -0.103 4.103 18 C -0.241 4.241 19 C 0.081 3.919 20 C -0.478 4.478 21 H 0.110 0.890 22 C -0.131 4.131 23 N -0.422 5.422 24 Si 0.730 3.270 25 H -0.188 1.188 26 H -0.214 1.214 27 H -0.173 1.173 28 C -0.162 4.162 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.268 0.732 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.130 0.870 43 H 0.117 0.883 44 H 0.124 0.876 45 H 0.097 0.903 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.419 7.460 -11.585 23.003 hybrid contribution -0.029 0.337 -0.204 0.396 sum -18.448 7.798 -11.789 23.241 Atomic orbital electron populations 1.22294 0.96005 1.02379 1.02492 1.22089 0.93531 0.93925 0.88049 1.21862 1.02117 0.94302 1.02432 1.88004 1.86591 1.19271 1.35798 1.22829 1.00597 0.82637 0.95652 1.20490 0.82133 1.02374 0.89962 0.83471 1.23647 0.81422 0.75834 0.87556 1.90740 1.77230 1.36488 1.33594 1.84492 1.22211 1.74819 1.51323 1.47478 1.04961 1.09044 1.71446 1.22260 1.03589 0.78316 1.01217 1.19062 0.84329 0.84873 0.75278 1.90696 1.84783 1.17023 1.49806 1.19225 0.92720 0.95863 1.02646 1.20894 0.99105 0.95674 1.08645 1.20556 0.94154 0.98082 0.97513 1.21338 1.01123 0.95190 1.06411 1.17629 0.92172 0.91624 0.90432 1.19427 0.90410 1.19175 1.18834 0.88969 1.26123 0.97579 0.92125 0.97306 1.69757 1.07411 1.35566 1.29440 0.86447 0.77636 0.79775 0.83117 1.18815 1.21405 1.17257 1.21167 0.95950 0.98171 1.00904 0.91853 0.91751 0.92397 0.92093 0.91712 0.91367 0.91764 0.91097 0.90979 0.73229 0.92773 0.89260 0.90706 0.86989 0.88275 0.87586 0.90345 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 9.53 37.16 0.35 -0.83 16 2 C 0.08 0.65 3.34 -26.73 -0.09 0.56 16 3 C -0.15 -1.10 9.56 37.16 0.36 -0.75 16 4 O -0.38 -3.95 7.16 -35.23 -0.25 -4.20 16 5 C 0.06 0.62 5.43 37.16 0.20 0.82 16 6 C 0.16 2.08 3.07 -69.09 -0.21 1.87 16 7 H 0.15 1.97 6.92 -51.93 -0.36 1.61 16 8 C 0.48 6.31 6.85 36.00 0.25 6.56 16 9 O -0.49 -8.19 15.35 -18.75 -0.29 -8.48 16 10 O -0.52 -4.93 13.35 -39.27 -0.52 -5.45 16 11 N -0.60 -9.65 2.54 -176.38 -0.45 -10.10 16 12 C 0.09 1.30 6.62 59.85 0.40 1.70 16 13 C 0.57 11.46 7.38 -12.31 -0.09 11.37 16 14 O -0.55 -11.99 16.19 5.32 0.09 -11.90 16 15 C -0.10 -2.22 5.37 -105.04 -0.56 -2.78 16 16 C -0.22 -4.42 7.51 -38.92 -0.29 -4.71 16 17 C -0.08 -1.75 10.01 -39.73 -0.40 -2.14 16 18 C -0.22 -5.20 7.44 -38.81 -0.29 -5.49 16 19 C 0.08 2.15 5.01 -106.87 -0.54 1.61 16 20 C -0.45 -12.20 9.50 -37.73 -0.36 -12.56 16 21 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 22 C 0.09 2.31 5.28 -17.34 -0.09 2.22 16 23 N -0.80 -21.07 13.93 55.55 0.77 -20.29 16 24 Si 0.91 20.41 25.21 -169.99 -4.28 16.13 16 25 H -0.26 -5.68 6.35 56.52 0.36 -5.32 16 26 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.25 -5.81 7.11 56.52 0.40 -5.41 16 28 C -0.14 -3.46 9.35 -38.44 -0.36 -3.81 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 32 H 0.06 0.44 7.79 -51.93 -0.40 0.04 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 38 H 0.41 2.27 9.10 45.56 0.41 2.69 16 39 H 0.05 0.72 6.99 -51.93 -0.36 0.35 16 40 H 0.09 1.48 5.48 -51.93 -0.28 1.19 16 41 H 0.07 1.10 5.59 -51.93 -0.29 0.81 16 42 H 0.11 1.87 4.90 -52.48 -0.26 1.61 16 43 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.11 2.48 5.14 -52.49 -0.27 2.21 16 45 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 46 H 0.11 2.69 8.01 -52.48 -0.42 2.27 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -31.61 374.41 -6.63 -38.24 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.61 Total: 6.78 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.73 Total: -6.36 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.33 Total: -30.39 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.98 Total: -30.03 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.28 Total: 16.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.61 -6.63 -38.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827011585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.186 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds