Wall clock time and date at job start Tue Mar 31 2020 19:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.47175 * 2 1 4 4 O 1.42900 * 109.47107 * 120.00069 * 2 1 3 5 5 C 1.42903 * 114.00263 * 89.99932 * 4 2 1 6 6 C 1.52997 * 109.47389 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.47344 * 174.99645 * 6 5 4 8 8 C 1.50699 * 109.46869 * 55.00023 * 6 5 4 9 9 O 1.20829 * 120.00292 * 239.99815 * 8 6 5 10 10 O 1.34235 * 120.00097 * 60.00088 * 8 6 5 11 11 N 1.46494 * 109.47259 * 295.00181 * 6 5 4 12 12 C 1.46500 * 120.00018 * 59.99465 * 11 6 5 13 13 C 1.34775 * 119.99854 * 239.99870 * 11 6 5 14 14 O 1.21547 * 120.00100 * 7.16250 * 13 11 6 15 15 C 1.47887 * 119.99870 * 187.15663 * 13 11 6 16 16 C 1.39917 * 120.02915 * 323.86862 * 15 13 11 17 17 C 1.38332 * 120.36094 * 179.71177 * 16 15 13 18 18 C 1.37749 * 120.40818 * 0.56548 * 17 16 15 19 19 C 1.40751 * 120.04225 * 359.70979 * 18 17 16 20 20 C 1.41432 * 120.17792 * 180.02562 * 19 18 17 21 21 H 1.08006 * 120.00285 * 149.11164 * 20 19 18 22 22 C 1.39935 * 120.00228 * 329.10902 * 20 19 18 23 23 N 1.30830 * 120.00000 * 155.21934 * 22 20 19 24 24 Si 1.86800 * 120.00041 * 335.22010 * 22 20 19 25 25 H 1.48493 * 109.47343 * 87.22151 * 24 22 20 26 26 H 1.48499 * 109.47167 * 207.22428 * 24 22 20 27 27 H 1.48501 * 109.47075 * 327.22351 * 24 22 20 28 28 C 1.38994 * 120.02378 * 144.13792 * 15 13 11 29 29 H 1.08995 * 109.46675 * 299.99854 * 1 2 3 30 30 H 1.08993 * 109.47066 * 60.00113 * 1 2 3 31 31 H 1.09001 * 109.46625 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47123 * 239.99599 * 2 1 3 33 33 H 1.08998 * 109.47430 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47169 * 300.00437 * 3 2 1 35 35 H 1.09004 * 109.47141 * 60.00216 * 3 2 1 36 36 H 1.08994 * 109.47043 * 59.99526 * 5 4 2 37 37 H 1.09000 * 109.46801 * 300.00423 * 5 4 2 38 38 H 0.96703 * 116.99476 * 179.97438 * 10 8 6 39 39 H 1.08992 * 109.47364 * 265.54834 * 12 11 6 40 40 H 1.09002 * 109.46889 * 145.54881 * 12 11 6 41 41 H 1.08996 * 109.47094 * 25.55519 * 12 11 6 42 42 H 1.08008 * 119.81944 * 359.97438 * 16 15 13 43 43 H 1.07995 * 119.79501 * 180.25388 * 17 16 15 44 44 H 1.07999 * 119.98052 * 179.74121 * 18 17 16 45 45 H 0.97005 * 119.99941 * 179.97438 * 23 22 20 46 46 H 1.08005 * 120.20528 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2002 -2.0782 0.9887 6 6 2.7092 -2.6925 2.2942 7 1 2.7724 -3.7752 2.1859 8 6 1.7578 -2.3543 3.4129 9 8 2.1483 -1.7278 4.3695 10 8 0.4765 -2.7489 3.3467 11 7 4.0363 -2.1542 2.6023 12 6 4.2155 -0.7131 2.7957 13 6 5.0925 -2.9848 2.7078 14 8 4.9727 -4.1598 2.4207 15 6 6.3972 -2.4665 3.1728 16 6 6.8104 -1.1806 2.8072 17 6 8.0267 -0.6867 3.2432 18 6 8.8503 -1.4589 4.0325 19 6 8.4542 -2.7569 4.4057 20 6 9.2974 -3.5520 5.2164 21 1 8.8690 -4.2721 5.8979 22 6 10.6867 -3.4058 5.1356 23 7 11.4395 -3.7363 6.1532 24 14 11.4664 -2.7387 3.5747 25 1 11.5039 -1.2554 3.6349 26 1 12.8496 -3.2641 3.4487 27 1 10.6655 -3.1662 2.3995 28 6 7.2164 -3.2584 3.9688 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 2.9320 -2.2467 0.1987 37 1 1.2539 -2.5433 0.7124 38 1 -0.0957 -2.5087 4.0884 39 1 4.5251 -0.2562 1.8559 40 1 4.9803 -0.5405 3.5530 41 1 3.2745 -0.2706 3.1223 42 1 6.1742 -0.5688 2.1847 43 1 8.3347 0.3086 2.9589 44 1 9.8004 -1.0679 4.3655 45 1 12.4027 -3.6353 6.0971 46 1 6.9034 -4.2530 4.2502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827011585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:39 Heat of formation + Delta-G solvation = -159.427904 kcal Electronic energy + Delta-G solvation = -29712.490431 eV Core-core repulsion = 25566.830633 eV Total energy + Delta-G solvation = -4145.659798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.04888 -40.81036 -39.41236 -38.99104 -37.36312 -36.58636 -35.59834 -33.96116 -32.69556 -31.88891 -30.92593 -28.05426 -27.97342 -27.04421 -25.73473 -24.61697 -22.64095 -22.28194 -22.20188 -20.74985 -19.58583 -18.99139 -18.21506 -18.12111 -17.70183 -17.45071 -16.99027 -16.68389 -16.51664 -16.15174 -15.99527 -15.49013 -15.36204 -15.06239 -14.57287 -14.45143 -14.22972 -14.14619 -13.88307 -13.78769 -13.61764 -13.50772 -13.37305 -12.98542 -12.86363 -12.81529 -12.68158 -12.61235 -12.36371 -12.32506 -12.25170 -11.78631 -11.74878 -11.59908 -11.48796 -11.20922 -10.79503 -10.52570 -9.93997 -9.59754 -9.52554 -8.94122 -6.51963 0.24409 0.74401 1.10308 1.26799 1.34352 1.41308 1.47942 1.85019 2.12333 2.18064 2.56328 2.57801 3.40435 3.49728 3.72358 3.99482 4.06422 4.15024 4.18532 4.26324 4.29509 4.36437 4.37753 4.47414 4.52613 4.64061 4.76110 4.81345 4.89606 4.92047 4.92964 4.96847 5.01473 5.07690 5.14017 5.31921 5.35491 5.40428 5.43115 5.53798 5.63745 5.74992 5.86538 6.04377 6.20863 6.24241 6.32968 6.67600 6.75613 6.87881 6.96844 8.15009 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.003008 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.286186 B = 9306.853159 C =10076.425221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.076 3.924 3 C -0.149 4.149 4 O -0.394 6.394 5 C 0.069 3.931 6 C 0.147 3.853 7 H 0.145 0.855 8 C 0.484 3.516 9 O -0.534 6.534 10 O -0.501 6.501 11 N -0.586 5.586 12 C 0.089 3.911 13 C 0.569 3.431 14 O -0.574 6.574 15 C -0.109 4.109 16 C -0.192 4.192 17 C -0.082 4.082 18 C -0.225 4.225 19 C 0.069 3.931 20 C -0.496 4.496 21 H 0.050 0.950 22 C 0.054 3.946 23 N -0.841 5.841 24 Si 0.959 3.041 25 H -0.239 1.239 26 H -0.271 1.271 27 H -0.263 1.263 28 C -0.171 4.171 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.429 0.571 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.109 0.891 45 H 0.296 0.704 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.821 11.049 -15.011 27.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.019 3.981 3 C -0.206 4.206 4 O -0.314 6.314 5 C -0.008 4.008 6 C 0.042 3.958 7 H 0.162 0.838 8 C 0.325 3.675 9 O -0.423 6.423 10 O -0.314 6.314 11 N -0.318 5.318 12 C -0.052 4.052 13 C 0.361 3.639 14 O -0.454 6.454 15 C -0.112 4.112 16 C -0.211 4.211 17 C -0.100 4.100 18 C -0.245 4.245 19 C 0.066 3.934 20 C -0.525 4.525 21 H 0.068 0.932 22 C -0.162 4.162 23 N -0.466 5.466 24 Si 0.780 3.220 25 H -0.163 1.163 26 H -0.197 1.197 27 H -0.187 1.187 28 C -0.192 4.192 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.291 0.709 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.172 0.828 43 H 0.164 0.836 44 H 0.126 0.874 45 H 0.106 0.894 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.293 10.551 -14.863 27.277 hybrid contribution 0.177 -0.526 0.752 0.935 sum -20.116 10.024 -14.111 26.538 Atomic orbital electron populations 1.22262 0.95172 1.02569 1.02790 1.22288 0.94226 0.94027 0.87577 1.21875 1.01742 0.94048 1.02924 1.87976 1.86960 1.19191 1.37252 1.22758 1.01783 0.82893 0.93408 1.20786 0.80754 1.02539 0.91738 0.83800 1.23535 0.82320 0.74950 0.86692 1.90737 1.78133 1.38531 1.34915 1.84433 1.20840 1.73925 1.52235 1.47418 1.05355 1.09212 1.69849 1.22305 1.03517 0.77427 1.01917 1.18796 0.84743 0.84823 0.75586 1.90680 1.85243 1.18162 1.51344 1.19524 0.93486 0.96537 1.01615 1.21453 0.98773 0.94497 1.06349 1.21057 0.93435 0.99626 0.95867 1.21518 1.01842 0.94475 1.06637 1.17715 0.92348 0.92565 0.90760 1.19372 0.91870 1.20622 1.20668 0.93184 1.26816 0.97266 0.92339 0.99796 1.69776 1.08156 1.37692 1.31015 0.85636 0.77149 0.80553 0.78634 1.16315 1.19680 1.18671 1.21110 0.96927 0.98167 1.02959 0.92782 0.90248 0.92257 0.90976 0.92255 0.89613 0.92593 0.90544 0.88512 0.70874 0.90127 0.90909 0.90238 0.82792 0.83571 0.87362 0.89373 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.53 71.99 0.69 -1.07 16 2 C 0.08 0.94 3.34 30.60 0.10 1.04 16 3 C -0.15 -1.69 9.56 71.98 0.69 -1.01 16 4 O -0.39 -6.91 7.16 -148.98 -1.07 -7.98 16 5 C 0.07 1.18 5.43 71.98 0.39 1.57 16 6 C 0.15 3.62 3.07 44.24 0.14 3.76 16 7 H 0.14 3.67 6.92 -2.39 -0.02 3.66 16 8 C 0.48 11.94 6.85 71.24 0.49 12.43 16 9 O -0.53 -17.07 15.35 21.96 0.34 -16.73 16 10 O -0.50 -8.25 13.35 -51.46 -0.69 -8.94 16 11 N -0.59 -17.90 2.54 -830.21 -2.10 -20.01 16 12 C 0.09 2.38 6.62 127.77 0.85 3.22 16 13 C 0.57 22.46 7.38 86.80 0.64 23.10 16 14 O -0.57 -25.52 16.19 -3.86 -0.06 -25.59 16 15 C -0.11 -4.68 5.37 -20.13 -0.11 -4.79 16 16 C -0.19 -6.92 7.51 22.70 0.17 -6.75 16 17 C -0.08 -3.06 10.01 22.18 0.22 -2.84 16 18 C -0.23 -10.33 7.44 22.77 0.17 -10.16 16 19 C 0.07 3.61 5.01 -21.32 -0.11 3.51 16 20 C -0.50 -28.89 9.50 23.47 0.22 -28.66 16 21 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 22 C 0.05 2.90 5.28 85.25 0.45 3.35 16 23 N -0.84 -46.52 13.93 21.82 0.30 -46.22 16 24 Si 0.96 42.06 25.21 68.60 1.73 43.79 16 25 H -0.24 -9.50 6.35 99.48 0.63 -8.87 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 28 C -0.17 -8.73 9.35 23.01 0.22 -8.51 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.59 7.87 -2.39 -0.02 0.57 16 32 H 0.07 0.75 7.79 -2.39 -0.02 0.73 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 37 H 0.10 1.21 7.87 -2.39 -0.02 1.19 16 38 H 0.43 3.62 9.10 -74.06 -0.67 2.95 16 39 H 0.08 1.74 6.99 -2.39 -0.02 1.72 16 40 H 0.07 2.19 5.48 -2.39 -0.01 2.18 16 41 H 0.08 2.12 5.59 -2.39 -0.01 2.11 16 42 H 0.15 4.29 4.90 -2.91 -0.01 4.27 16 43 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 44 H 0.11 4.89 5.14 -2.91 -0.01 4.87 16 45 H 0.30 14.55 8.30 -92.70 -0.77 13.78 16 46 H 0.09 4.65 8.01 -2.91 -0.02 4.62 16 Total: -1.00 -73.40 374.41 3.93 -69.47 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.27 Total: 23.99 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 5.21 Total: -11.80 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -1.80 Total: -66.22 kcal Atomic # 8 Polarization: -57.75 SS G_CDS: -1.48 Total: -59.23 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.73 Total: 43.79 kcal Total: -73.40 3.93 -69.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827011585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.961 kcal (2) G-P(sol) polarization free energy of solvation -73.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds