Wall clock time and date at job start Tue Mar 31 2020 19:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47057 * 2 1 4 4 O 1.42902 * 109.47322 * 120.00200 * 2 1 3 5 5 C 1.42902 * 113.99999 * 149.99478 * 4 2 1 6 6 C 1.52993 * 109.47068 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.47375 * 184.99987 * 6 5 4 8 8 C 1.50698 * 109.47600 * 305.00376 * 6 5 4 9 9 O 1.20823 * 120.00242 * 119.99326 * 8 6 5 10 10 O 1.34230 * 119.99906 * 300.00453 * 8 6 5 11 11 N 1.46500 * 109.47057 * 65.00466 * 6 5 4 12 12 C 1.46502 * 120.00295 * 299.99915 * 11 6 5 13 13 C 1.34781 * 120.00294 * 119.99749 * 11 6 5 14 14 O 1.21586 * 119.99465 * 355.48459 * 13 11 6 15 15 C 1.47642 * 120.00127 * 175.47885 * 13 11 6 16 16 C 1.40007 * 119.89501 * 221.69536 * 15 13 11 17 17 C 1.36322 * 120.10669 * 179.76375 * 16 15 13 18 18 C 1.40884 * 119.88727 * 0.51176 * 17 16 15 19 19 C 1.41112 * 120.10422 * 179.71939 * 18 17 16 20 20 H 1.07998 * 120.00002 * 209.13704 * 19 18 17 21 21 C 1.40227 * 119.99704 * 29.13285 * 19 18 17 22 22 N 1.30641 * 120.00051 * 10.54730 * 21 19 18 23 23 Si 1.86798 * 119.99819 * 190.55169 * 21 19 18 24 24 H 1.48494 * 109.47609 * 90.00153 * 23 21 19 25 25 H 1.48508 * 109.46913 * 209.99864 * 23 21 19 26 26 H 1.48496 * 109.47280 * 329.99644 * 23 21 19 27 27 C 1.40894 * 119.79767 * 359.74455 * 18 17 16 28 28 C 1.36309 * 119.88867 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.46995 * 299.99772 * 1 2 3 30 30 H 1.08996 * 109.47510 * 59.99702 * 1 2 3 31 31 H 1.09008 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46993 * 240.00055 * 2 1 3 33 33 H 1.09000 * 109.46912 * 60.00780 * 3 2 1 34 34 H 1.08999 * 109.46390 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.46873 * 300.00053 * 3 2 1 36 36 H 1.08998 * 109.46447 * 60.00055 * 5 4 2 37 37 H 1.09004 * 109.47328 * 300.00200 * 5 4 2 38 38 H 0.96704 * 117.00226 * 180.02562 * 10 8 6 39 39 H 1.08998 * 109.47169 * 95.24275 * 12 11 6 40 40 H 1.08999 * 109.47658 * 215.24922 * 12 11 6 41 41 H 1.09007 * 109.46864 * 335.24531 * 12 11 6 42 42 H 1.07998 * 119.94709 * 0.02562 * 16 15 13 43 43 H 1.07997 * 120.05631 * 180.23434 * 17 16 15 44 44 H 0.97008 * 120.00131 * 179.97438 * 22 21 19 45 45 H 1.07995 * 120.05624 * 179.97438 * 27 18 17 46 46 H 1.08000 * 119.94730 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2660 -1.3246 0.9885 6 6 3.6761 -2.0082 2.2943 7 1 4.6758 -2.4288 2.1859 8 6 3.6748 -0.9977 3.4124 9 8 2.9544 -1.1564 4.3693 10 8 4.4737 0.0788 3.3450 11 7 2.7264 -3.0799 2.6037 12 6 1.3080 -2.7686 2.7975 13 6 3.1575 -4.3525 2.7099 14 8 4.3180 -4.6233 2.4687 15 6 2.2206 -5.4176 3.1193 16 6 2.6357 -6.4023 4.0239 17 6 1.7727 -7.3850 4.4086 18 6 0.4647 -7.4147 3.8860 19 6 -0.4306 -8.4332 4.2765 20 1 -1.2054 -8.7601 3.5988 21 6 -0.3141 -9.0208 5.5443 22 7 0.4800 -8.4940 6.4380 23 14 -1.2942 -10.5570 5.9554 24 1 -0.5011 -11.7606 5.5985 25 1 -1.5967 -10.5768 7.4092 26 1 -2.5640 -10.5547 5.1855 27 6 0.0533 -6.4247 2.9718 28 6 0.9215 -5.4428 2.5975 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 4.0199 -0.5874 0.7123 37 1 3.1808 -2.0708 0.1985 38 1 4.4384 0.6988 4.0863 39 1 0.7711 -2.9224 1.8615 40 1 0.8942 -3.4220 3.5655 41 1 1.2036 -1.7294 3.1097 42 1 3.6398 -6.3810 4.4208 43 1 2.0925 -8.1419 5.1093 44 1 0.5603 -8.9003 7.3152 45 1 -0.9483 -6.4437 2.5683 46 1 0.6073 -4.6837 1.8965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833505117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:43 Heat of formation + Delta-G solvation = -148.355052 kcal Electronic energy + Delta-G solvation = -29614.008273 eV Core-core repulsion = 25468.828630 eV Total energy + Delta-G solvation = -4145.179643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.70986 -39.19286 -38.47838 -37.15386 -36.17577 -35.11437 -33.87233 -32.94266 -30.90178 -29.87232 -29.16598 -27.46257 -26.38988 -25.77317 -24.57286 -22.31816 -21.56334 -21.14164 -20.59045 -18.95939 -18.11150 -17.51654 -17.22168 -16.84709 -16.49526 -15.88087 -15.58612 -15.35139 -15.09332 -14.67294 -14.43343 -14.17623 -13.74779 -13.39537 -13.18608 -12.99455 -12.90645 -12.73405 -12.50197 -12.41083 -12.32200 -12.05786 -11.97792 -11.79481 -11.66302 -11.63667 -11.40160 -11.27859 -11.12796 -10.92365 -10.85935 -10.59837 -10.48633 -9.98448 -9.79690 -9.48077 -9.36141 -9.07905 -8.40584 -7.64981 -7.43887 -6.89108 -4.55458 2.24316 2.30865 2.70549 2.97002 3.00222 3.03101 3.05410 3.36758 3.46556 3.69693 3.82065 4.53923 4.56949 4.76436 4.80879 4.95332 5.02626 5.10466 5.13585 5.34885 5.42207 5.53484 5.56300 5.58060 5.62616 5.74335 5.78326 5.93033 5.95755 6.01267 6.23235 6.27858 6.37857 6.52103 6.73994 6.86197 6.90162 6.99179 7.07400 7.15790 7.49605 7.60932 7.73812 7.89271 7.91533 8.00356 8.13688 8.48815 8.70711 8.77608 8.82123 10.02782 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.002815 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.843582 B = 9944.882595 C =10660.401228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 C -0.174 4.174 4 O -0.376 6.376 5 C 0.061 3.939 6 C 0.157 3.843 7 H 0.146 0.854 8 C 0.475 3.525 9 O -0.495 6.495 10 O -0.518 6.518 11 N -0.599 5.599 12 C 0.097 3.903 13 C 0.582 3.418 14 O -0.565 6.565 15 C -0.269 4.269 16 C -0.044 4.044 17 C -0.171 4.171 18 C 0.128 3.872 19 C -0.449 4.449 20 H 0.082 0.918 21 C 0.072 3.928 22 N -0.783 5.783 23 Si 0.915 3.085 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.230 4.230 28 C -0.056 4.056 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.407 0.593 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.123 0.877 44 H 0.285 0.715 45 H 0.097 0.903 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 16.063 -9.180 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.231 4.231 4 O -0.296 6.296 5 C -0.017 4.017 6 C 0.050 3.950 7 H 0.164 0.836 8 C 0.315 3.685 9 O -0.380 6.380 10 O -0.330 6.330 11 N -0.333 5.333 12 C -0.045 4.045 13 C 0.377 3.623 14 O -0.445 6.445 15 C -0.273 4.273 16 C -0.063 4.063 17 C -0.191 4.191 18 C 0.125 3.875 19 C -0.478 4.478 20 H 0.100 0.900 21 C -0.148 4.148 22 N -0.407 5.407 23 Si 0.739 3.261 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.250 4.250 28 C -0.075 4.075 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.266 0.734 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.141 0.859 44 H 0.096 0.904 45 H 0.116 0.884 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.402 15.559 -8.925 18.097 hybrid contribution -0.341 -0.058 0.669 0.753 sum 2.061 15.501 -8.256 17.683 Atomic orbital electron populations 1.21862 0.93431 1.03051 1.02379 1.22085 0.95177 0.92248 0.88107 1.22293 1.01546 0.96856 1.02445 1.88014 1.36049 1.69839 1.35696 1.22840 0.86877 0.96138 0.95844 1.20454 0.98317 0.86452 0.89739 0.83638 1.23741 0.76357 0.80781 0.87663 1.90737 1.38842 1.74868 1.33598 1.84498 1.62387 1.34820 1.51284 1.47576 1.08619 1.05143 1.72001 1.21966 0.79394 1.02278 1.00893 1.18936 0.87589 0.81474 0.74262 1.90643 1.19826 1.82496 1.51523 1.18726 0.95382 1.01279 1.11958 1.20375 0.97710 0.93278 0.94964 1.21037 0.93282 1.00282 1.04463 1.17785 0.91517 0.89874 0.88359 1.19776 1.13074 1.15633 0.99292 0.89958 1.26050 0.94926 0.97769 0.96013 1.69717 1.30153 1.35962 1.04841 0.86188 0.80509 0.81094 0.78274 1.19102 1.20099 1.18443 1.20729 0.98638 0.98238 1.07351 1.20596 0.92110 0.97321 0.97430 0.91779 0.91411 0.91663 0.92131 0.91871 0.92434 0.91795 0.91187 0.91189 0.73402 0.93156 0.90121 0.90865 0.88813 0.85916 0.90417 0.88441 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.56 37.16 0.36 -0.89 16 2 C 0.08 0.72 3.34 -26.73 -0.09 0.63 16 3 C -0.17 -1.31 9.53 37.16 0.35 -0.96 16 4 O -0.38 -4.36 7.14 -35.23 -0.25 -4.61 16 5 C 0.06 0.68 5.43 37.15 0.20 0.89 16 6 C 0.16 2.27 3.07 -69.09 -0.21 2.06 16 7 H 0.15 2.12 6.91 -51.93 -0.36 1.76 16 8 C 0.48 6.82 6.85 36.00 0.25 7.07 16 9 O -0.49 -8.80 15.36 -18.75 -0.29 -9.09 16 10 O -0.52 -5.41 13.35 -39.26 -0.52 -5.93 16 11 N -0.60 -10.57 2.54 -176.45 -0.45 -11.02 16 12 C 0.10 1.61 6.73 59.85 0.40 2.01 16 13 C 0.58 12.43 7.31 -12.42 -0.09 12.34 16 14 O -0.56 -13.07 16.28 5.29 0.09 -12.99 16 15 C -0.27 -6.20 5.16 -104.73 -0.54 -6.74 16 16 C -0.04 -1.08 9.58 -39.61 -0.38 -1.46 16 17 C -0.17 -4.42 8.60 -39.27 -0.34 -4.76 16 18 C 0.13 3.28 5.55 -106.80 -0.59 2.69 16 19 C -0.45 -11.35 9.05 -37.75 -0.34 -11.69 16 20 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 21 C 0.07 1.73 5.25 -17.31 -0.09 1.64 16 22 N -0.78 -19.56 10.84 55.56 0.60 -18.96 16 23 Si 0.92 17.88 29.57 -169.99 -5.03 12.86 16 24 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 25 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 27 C -0.23 -5.36 9.73 -39.27 -0.38 -5.74 16 28 C -0.06 -1.21 7.55 -39.61 -0.30 -1.51 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 32 H 0.06 0.49 7.79 -51.92 -0.40 0.08 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 37 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.41 2.61 9.10 45.56 0.41 3.02 16 39 H 0.05 0.75 6.83 -51.93 -0.35 0.40 16 40 H 0.08 1.52 6.01 -51.93 -0.31 1.21 16 41 H 0.07 1.19 5.57 -51.93 -0.29 0.91 16 42 H 0.09 2.24 8.06 -52.49 -0.42 1.82 16 43 H 0.12 3.25 6.22 -52.49 -0.33 2.93 16 44 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 45 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 46 H 0.10 1.85 5.54 -52.49 -0.29 1.56 16 LS Contribution 379.48 15.07 5.72 5.72 Total: -1.00 -31.10 379.48 -7.59 -38.69 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.67 Total: 9.74 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -1.80 Total: -4.42 kcal Atomic # 7 Polarization: -30.13 SS G_CDS: 0.15 Total: -29.98 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.98 Total: -32.62 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.10 -7.59 -38.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833505117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.664 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds