Wall clock time and date at job start Tue Mar 31 2020 19:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47057 * 2 1 4 4 O 1.42902 * 109.47322 * 120.00200 * 2 1 3 5 5 C 1.42902 * 113.99999 * 149.99478 * 4 2 1 6 6 C 1.52993 * 109.47068 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.47375 * 184.99987 * 6 5 4 8 8 C 1.50698 * 109.47600 * 305.00376 * 6 5 4 9 9 O 1.20823 * 120.00242 * 119.99326 * 8 6 5 10 10 O 1.34230 * 119.99906 * 300.00453 * 8 6 5 11 11 N 1.46500 * 109.47057 * 65.00466 * 6 5 4 12 12 C 1.46502 * 120.00295 * 299.99915 * 11 6 5 13 13 C 1.34781 * 120.00294 * 119.99749 * 11 6 5 14 14 O 1.21586 * 119.99465 * 355.48459 * 13 11 6 15 15 C 1.47642 * 120.00127 * 175.47885 * 13 11 6 16 16 C 1.40007 * 119.89501 * 221.69536 * 15 13 11 17 17 C 1.36322 * 120.10669 * 179.76375 * 16 15 13 18 18 C 1.40884 * 119.88727 * 0.51176 * 17 16 15 19 19 C 1.41112 * 120.10422 * 179.71939 * 18 17 16 20 20 H 1.07998 * 120.00002 * 209.13704 * 19 18 17 21 21 C 1.40227 * 119.99704 * 29.13285 * 19 18 17 22 22 N 1.30641 * 120.00051 * 10.54730 * 21 19 18 23 23 Si 1.86798 * 119.99819 * 190.55169 * 21 19 18 24 24 H 1.48494 * 109.47609 * 90.00153 * 23 21 19 25 25 H 1.48508 * 109.46913 * 209.99864 * 23 21 19 26 26 H 1.48496 * 109.47280 * 329.99644 * 23 21 19 27 27 C 1.40894 * 119.79767 * 359.74455 * 18 17 16 28 28 C 1.36309 * 119.88867 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.46995 * 299.99772 * 1 2 3 30 30 H 1.08996 * 109.47510 * 59.99702 * 1 2 3 31 31 H 1.09008 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46993 * 240.00055 * 2 1 3 33 33 H 1.09000 * 109.46912 * 60.00780 * 3 2 1 34 34 H 1.08999 * 109.46390 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.46873 * 300.00053 * 3 2 1 36 36 H 1.08998 * 109.46447 * 60.00055 * 5 4 2 37 37 H 1.09004 * 109.47328 * 300.00200 * 5 4 2 38 38 H 0.96704 * 117.00226 * 180.02562 * 10 8 6 39 39 H 1.08998 * 109.47169 * 95.24275 * 12 11 6 40 40 H 1.08999 * 109.47658 * 215.24922 * 12 11 6 41 41 H 1.09007 * 109.46864 * 335.24531 * 12 11 6 42 42 H 1.07998 * 119.94709 * 0.02562 * 16 15 13 43 43 H 1.07997 * 120.05631 * 180.23434 * 17 16 15 44 44 H 0.97008 * 120.00131 * 179.97438 * 22 21 19 45 45 H 1.07995 * 120.05624 * 179.97438 * 27 18 17 46 46 H 1.08000 * 119.94730 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2660 -1.3246 0.9885 6 6 3.6761 -2.0082 2.2943 7 1 4.6758 -2.4288 2.1859 8 6 3.6748 -0.9977 3.4124 9 8 2.9544 -1.1564 4.3693 10 8 4.4737 0.0788 3.3450 11 7 2.7264 -3.0799 2.6037 12 6 1.3080 -2.7686 2.7975 13 6 3.1575 -4.3525 2.7099 14 8 4.3180 -4.6233 2.4687 15 6 2.2206 -5.4176 3.1193 16 6 2.6357 -6.4023 4.0239 17 6 1.7727 -7.3850 4.4086 18 6 0.4647 -7.4147 3.8860 19 6 -0.4306 -8.4332 4.2765 20 1 -1.2054 -8.7601 3.5988 21 6 -0.3141 -9.0208 5.5443 22 7 0.4800 -8.4940 6.4380 23 14 -1.2942 -10.5570 5.9554 24 1 -0.5011 -11.7606 5.5985 25 1 -1.5967 -10.5768 7.4092 26 1 -2.5640 -10.5547 5.1855 27 6 0.0533 -6.4247 2.9718 28 6 0.9215 -5.4428 2.5975 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 4.0199 -0.5874 0.7123 37 1 3.1808 -2.0708 0.1985 38 1 4.4384 0.6988 4.0863 39 1 0.7711 -2.9224 1.8615 40 1 0.8942 -3.4220 3.5655 41 1 1.2036 -1.7294 3.1097 42 1 3.6398 -6.3810 4.4208 43 1 2.0925 -8.1419 5.1093 44 1 0.5603 -8.9003 7.3152 45 1 -0.9483 -6.4437 2.5683 46 1 0.6073 -4.6837 1.8965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833505117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:42 Heat of formation + Delta-G solvation = -167.110107 kcal Electronic energy + Delta-G solvation = -29614.821553 eV Core-core repulsion = 25468.828630 eV Total energy + Delta-G solvation = -4145.992923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.95155 -40.67271 -39.38746 -38.89096 -37.30799 -36.47193 -35.66073 -33.85572 -32.29080 -31.67476 -30.74943 -28.09942 -27.93363 -27.37994 -25.62573 -23.88954 -22.96601 -22.21332 -22.08486 -20.43654 -19.39826 -19.20917 -18.35103 -18.08616 -17.73893 -17.21325 -16.87919 -16.85887 -16.08332 -15.95618 -15.86332 -15.48949 -15.17005 -14.85899 -14.58086 -14.21152 -14.15280 -13.87326 -13.83797 -13.64529 -13.46972 -13.43009 -13.30843 -13.01515 -12.99223 -12.81441 -12.67476 -12.57208 -12.37172 -12.33130 -12.24630 -11.73595 -11.71737 -11.57365 -11.34633 -11.15023 -10.83796 -10.52130 -9.84185 -9.52899 -9.31992 -8.69767 -6.47100 0.50554 1.12140 1.14589 1.38519 1.40724 1.50432 1.53831 1.99676 2.18413 2.23580 2.57989 2.73529 3.60732 3.65969 3.85748 4.02550 4.10220 4.17506 4.21414 4.29147 4.36369 4.37330 4.37818 4.46146 4.53839 4.76203 4.80683 4.91322 4.96240 4.97402 5.00168 5.04679 5.06958 5.20002 5.27377 5.34508 5.38160 5.41063 5.55083 5.61664 5.76933 5.95333 6.02698 6.22084 6.24159 6.32109 6.58840 6.81594 6.91063 6.91462 7.14736 8.24863 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.002815 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.843582 B = 9944.882595 C =10660.401228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 C -0.169 4.169 4 O -0.395 6.395 5 C 0.069 3.931 6 C 0.148 3.852 7 H 0.145 0.855 8 C 0.484 3.516 9 O -0.536 6.536 10 O -0.501 6.501 11 N -0.592 5.592 12 C 0.104 3.896 13 C 0.581 3.419 14 O -0.589 6.589 15 C -0.277 4.277 16 C -0.057 4.057 17 C -0.192 4.192 18 C 0.100 3.900 19 C -0.479 4.479 20 H 0.089 0.911 21 C 0.031 3.969 22 N -0.817 5.817 23 Si 0.990 3.010 24 H -0.262 1.262 25 H -0.269 1.269 26 H -0.252 1.252 27 C -0.239 4.239 28 C -0.043 4.043 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.428 0.572 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.292 0.708 45 H 0.116 0.884 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 17.626 -10.810 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.018 3.982 3 C -0.227 4.227 4 O -0.316 6.316 5 C -0.008 4.008 6 C 0.042 3.958 7 H 0.162 0.838 8 C 0.325 3.675 9 O -0.425 6.425 10 O -0.314 6.314 11 N -0.324 5.324 12 C -0.037 4.037 13 C 0.375 3.625 14 O -0.471 6.471 15 C -0.281 4.281 16 C -0.077 4.077 17 C -0.211 4.211 18 C 0.098 3.902 19 C -0.507 4.507 20 H 0.107 0.893 21 C -0.186 4.186 22 N -0.442 5.442 23 Si 0.810 3.190 24 H -0.187 1.187 25 H -0.194 1.194 26 H -0.176 1.176 27 C -0.258 4.258 28 C -0.062 4.062 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.290 0.710 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.124 0.876 44 H 0.103 0.897 45 H 0.134 0.866 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.739 17.198 -10.573 20.262 hybrid contribution -0.046 -0.337 1.136 1.186 sum 1.693 16.861 -9.437 19.396 Atomic orbital electron populations 1.21879 0.93200 1.02622 1.02938 1.22294 0.95399 0.92885 0.87597 1.22252 1.01679 0.95933 1.02802 1.87985 1.36113 1.70211 1.37257 1.22773 0.87758 0.96765 0.93553 1.20764 0.97533 0.85926 0.91581 0.83766 1.23597 0.75895 0.81284 0.86727 1.90736 1.40770 1.76009 1.34991 1.84433 1.60757 1.33999 1.52204 1.47458 1.09598 1.04789 1.70603 1.21920 0.78848 1.01888 1.01093 1.18641 0.86856 0.82498 0.74472 1.90623 1.20434 1.83190 1.52867 1.19019 0.96457 1.01453 1.11176 1.20465 0.97504 0.93892 0.95794 1.20957 0.94099 1.00773 1.05284 1.18135 0.91611 0.91088 0.89411 1.20074 1.13690 1.16646 1.00297 0.89301 1.26962 0.95733 1.00518 0.95355 1.69787 1.31459 1.37471 1.05468 0.85072 0.79027 0.76645 0.78241 1.18690 1.19363 1.17587 1.20979 0.99805 0.97991 1.07008 1.20860 0.91098 0.97231 0.96977 0.92675 0.89433 0.92560 0.90952 0.92823 0.92147 0.90148 0.88439 0.90724 0.70969 0.91010 0.92583 0.90342 0.89199 0.87628 0.89749 0.86641 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.56 71.98 0.69 -1.43 16 2 C 0.08 1.12 3.34 30.59 0.10 1.22 16 3 C -0.17 -2.04 9.53 71.98 0.69 -1.36 16 4 O -0.40 -8.13 7.14 -148.98 -1.06 -9.19 16 5 C 0.07 1.36 5.43 71.98 0.39 1.75 16 6 C 0.15 4.03 3.07 44.24 0.14 4.17 16 7 H 0.15 4.01 6.91 -2.39 -0.02 4.00 16 8 C 0.48 13.13 6.85 71.24 0.49 13.62 16 9 O -0.54 -18.69 15.36 21.97 0.34 -18.35 16 10 O -0.50 -9.14 13.35 -51.42 -0.69 -9.83 16 11 N -0.59 -20.31 2.54 -830.43 -2.11 -22.41 16 12 C 0.10 3.34 6.73 127.77 0.86 4.20 16 13 C 0.58 24.75 7.31 86.73 0.63 25.39 16 14 O -0.59 -27.37 16.28 -3.99 -0.06 -27.43 16 15 C -0.28 -12.90 5.16 -19.93 -0.10 -13.00 16 16 C -0.06 -2.93 9.58 22.25 0.21 -2.72 16 17 C -0.19 -10.37 8.60 22.47 0.19 -10.18 16 18 C 0.10 5.31 5.55 -21.28 -0.12 5.19 16 19 C -0.48 -24.67 9.05 23.46 0.21 -24.46 16 20 H 0.09 4.30 7.87 -2.91 -0.02 4.27 16 21 C 0.03 1.50 5.25 85.35 0.45 1.95 16 22 N -0.82 -42.09 10.84 21.87 0.24 -41.85 16 23 Si 0.99 36.66 29.57 68.60 2.03 38.69 16 24 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 25 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 26 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 27 C -0.24 -11.13 9.73 22.47 0.22 -10.91 16 28 C -0.04 -1.85 7.55 22.25 0.17 -1.68 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.07 0.92 7.79 -2.38 -0.02 0.90 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.69 7.87 -2.39 -0.02 0.67 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 36 H 0.10 1.41 7.87 -2.39 -0.02 1.39 16 37 H 0.07 1.43 8.09 -2.39 -0.02 1.41 16 38 H 0.43 4.31 9.10 -74.05 -0.67 3.64 16 39 H 0.07 1.98 6.83 -2.39 -0.02 1.96 16 40 H 0.06 2.08 6.01 -2.39 -0.01 2.07 16 41 H 0.08 2.47 5.57 -2.38 -0.01 2.45 16 42 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 43 H 0.11 5.96 6.22 -2.91 -0.02 5.94 16 44 H 0.29 13.57 8.29 -92.70 -0.77 12.80 16 45 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 46 H 0.13 4.68 5.54 -2.91 -0.02 4.66 16 Total: -1.00 -69.21 379.48 4.24 -64.97 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: 0.34 Total: 33.67 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 5.22 Total: -8.25 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -1.87 Total: -64.27 kcal Atomic # 8 Polarization: -63.32 SS G_CDS: -1.48 Total: -64.80 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Total: -69.21 4.24 -64.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833505117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.144 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds