Wall clock time and date at job start Tue Mar 31 2020 19:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00130 * 2 1 4 4 C 1.53005 * 109.47506 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46700 * 64.99863 * 4 3 2 6 6 C 1.36902 * 119.99899 * 286.43107 * 5 4 3 7 7 H 1.07997 * 119.99742 * 37.02170 * 6 5 4 8 8 C 1.39019 * 119.99781 * 217.01911 * 6 5 4 9 9 N 1.31386 * 119.99908 * 32.75864 * 8 6 5 10 10 Si 1.86805 * 119.99956 * 212.75534 * 8 6 5 11 11 H 1.48499 * 109.46885 * 65.00363 * 10 8 6 12 12 H 1.48501 * 109.46970 * 185.00014 * 10 8 6 13 13 H 1.48501 * 109.47016 * 305.00202 * 10 8 6 14 14 C 1.34772 * 119.99504 * 106.43590 * 5 4 3 15 15 O 1.21625 * 119.99370 * 175.83828 * 14 5 4 16 16 C 1.47490 * 120.00383 * 355.83715 * 14 5 4 17 17 C 1.39866 * 120.25153 * 157.02687 * 16 14 5 18 18 C 1.37380 * 119.95535 * 179.97438 * 17 16 14 19 19 C 1.39055 * 120.97492 * 0.37221 * 18 17 16 20 20 C 1.39982 * 119.10517 * 359.43582 * 19 18 17 21 21 O 1.36000 * 119.83368 * 180.35294 * 20 19 18 22 22 C 1.42904 * 117.00388 * 184.38691 * 21 20 19 23 23 C 1.37917 * 120.33813 * 0.38133 * 20 19 18 24 24 O 1.36097 * 111.17758 * 178.94783 * 19 18 17 25 25 C 1.43767 * 109.22755 * 19.39789 * 24 19 18 26 26 H 1.09000 * 110.74731 * 213.69972 * 25 24 19 27 27 C 1.53002 * 110.74404 * 90.35513 * 25 24 19 28 28 C 1.51686 * 132.00369 * 180.88246 * 18 17 16 29 29 H 1.08996 * 109.47419 * 59.99959 * 1 2 3 30 30 H 1.09002 * 109.47036 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47175 * 299.99712 * 1 2 3 32 32 H 1.09000 * 109.47144 * 59.99751 * 3 2 1 33 33 H 1.09005 * 109.47018 * 300.00142 * 3 2 1 34 34 H 1.08994 * 109.46659 * 305.00041 * 4 3 2 35 35 H 1.08995 * 109.46908 * 184.99928 * 4 3 2 36 36 H 0.97000 * 119.99475 * 184.97652 * 9 8 6 37 37 H 1.07996 * 120.02264 * 359.96746 * 17 16 14 38 38 H 1.09006 * 109.47209 * 303.59255 * 22 21 20 39 39 H 1.09001 * 109.47033 * 63.58780 * 22 21 20 40 40 H 1.08997 * 109.46894 * 183.59159 * 22 21 20 41 41 H 1.07998 * 119.93469 * 180.02562 * 23 20 19 42 42 H 1.08996 * 109.47447 * 61.45777 * 27 25 24 43 43 H 1.09007 * 109.46604 * 181.45378 * 27 25 24 44 44 H 1.08997 * 109.47626 * 301.44919 * 27 25 24 45 45 H 1.08991 * 110.94037 * 282.53827 * 28 18 17 46 46 H 1.08999 * 110.93970 * 46.22987 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 3.7812 -0.7750 -1.4585 7 1 2.8818 -1.2517 -1.0977 8 6 4.7414 -1.5214 -2.1319 9 7 6.0132 -1.2124 -2.0170 10 14 4.2234 -2.9638 -3.2000 11 1 3.4215 -2.4674 -4.3470 12 1 5.4314 -3.6635 -3.7066 13 1 3.4058 -3.9070 -2.3956 14 6 4.5720 1.3125 -2.2020 15 8 5.0054 0.7850 -3.2087 16 6 4.6992 2.7706 -2.0202 17 6 5.6895 3.4824 -2.7050 18 6 5.8021 4.8405 -2.5315 19 6 4.9478 5.5258 -1.6747 20 6 3.9539 4.8148 -0.9920 21 8 3.1057 5.4714 -0.1558 22 6 2.1774 4.6750 0.5832 23 6 3.8306 3.4518 -1.1626 24 8 5.2499 6.8523 -1.6365 25 6 6.0250 7.1949 -2.7978 26 1 6.7487 7.9754 -2.5626 27 6 5.1144 7.6271 -3.9489 28 6 6.7421 5.8664 -3.1355 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8514 0.5682 0.8409 35 1 3.9785 2.1765 0.0889 36 1 6.6768 -1.6863 -2.5423 37 1 6.3651 2.9647 -3.3697 38 1 1.5821 4.0767 -0.1066 39 1 2.7219 4.0156 1.2591 40 1 1.5202 5.3250 1.1607 41 1 3.0612 2.9098 -0.6330 42 1 4.5516 8.5128 -3.6542 43 1 5.7208 7.8570 -4.8251 44 1 4.4224 6.8196 -4.1877 45 1 7.7230 5.8222 -2.6624 46 1 6.8248 5.7317 -4.2139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837235136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:09 Heat of formation + Delta-G solvation = -65.944125 kcal Electronic energy + Delta-G solvation = -30706.402582 eV Core-core repulsion = 26564.796545 eV Total energy + Delta-G solvation = -4141.606037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.21065 -39.49303 -38.44768 -37.30201 -35.93065 -34.35645 -32.79805 -32.29598 -30.47565 -29.48510 -29.24015 -27.29834 -26.60839 -25.91699 -24.88406 -22.96095 -22.12477 -21.53280 -21.24154 -19.65897 -17.71605 -17.31544 -16.71033 -16.44933 -16.11962 -16.05238 -15.73366 -15.38537 -14.93374 -14.75851 -14.64189 -14.24571 -13.99544 -13.77123 -13.45421 -13.25702 -13.05169 -12.80923 -12.54768 -12.28098 -12.18880 -12.01903 -12.00137 -11.53388 -11.47026 -11.42761 -11.19531 -11.11306 -11.00014 -10.90518 -10.77172 -10.65448 -10.37787 -10.26376 -9.97188 -9.27348 -8.73106 -8.23805 -8.09548 -7.54393 -7.17399 -6.14362 -3.70051 1.32380 1.64954 3.28611 3.39014 3.41368 3.46704 3.52594 3.70782 4.14792 4.29168 4.47914 4.59957 4.69963 4.84481 4.89874 5.03792 5.11034 5.12678 5.17481 5.24404 5.32165 5.41685 5.44301 5.46504 5.51066 5.56144 5.59295 5.63105 5.66847 5.69940 5.76670 5.81735 5.87926 5.88028 5.95850 6.04379 6.10624 6.42865 6.52395 6.59681 6.78686 6.86859 7.05545 7.56406 7.64615 7.79470 8.30150 9.01171 9.20843 9.66455 10.24982 10.92722 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012439 B = 0.004537 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.491735 B = 6170.503336 C = 7953.159336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.043 3.957 4 C 0.066 3.934 5 N -0.422 5.422 6 C -0.343 4.343 7 H 0.103 0.897 8 C 0.081 3.919 9 N -0.811 5.811 10 Si 0.901 3.099 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.488 3.512 15 O -0.537 6.537 16 C -0.078 4.078 17 C -0.060 4.060 18 C -0.143 4.143 19 C 0.070 3.930 20 C 0.102 3.898 21 O -0.314 6.314 22 C 0.021 3.979 23 C -0.194 4.194 24 O -0.294 6.294 25 C 0.076 3.924 26 H 0.113 0.887 27 C -0.171 4.171 28 C -0.103 4.103 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.265 0.735 37 H 0.135 0.865 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.166 0.834 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.946 14.647 3.087 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.276 6.276 3 C -0.034 4.034 4 C -0.058 4.058 5 N -0.141 5.141 6 C -0.468 4.468 7 H 0.120 0.880 8 C -0.131 4.131 9 N -0.443 5.443 10 Si 0.727 3.273 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.203 1.203 14 C 0.277 3.723 15 O -0.418 6.418 16 C -0.082 4.082 17 C -0.080 4.080 18 C -0.144 4.144 19 C 0.025 3.975 20 C 0.057 3.943 21 O -0.228 6.228 22 C -0.074 4.074 23 C -0.213 4.213 24 O -0.209 6.209 25 C 0.019 3.981 26 H 0.130 0.870 27 C -0.228 4.228 28 C -0.140 4.140 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.153 0.847 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.183 0.817 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.484 14.461 2.796 15.396 hybrid contribution -0.402 -0.663 -0.510 0.927 sum -4.885 13.799 2.286 14.815 Atomic orbital electron populations 1.22717 0.82770 1.02383 0.99044 1.88172 1.18007 1.26467 1.94976 1.23153 0.95826 0.85743 0.98716 1.22522 0.91528 1.00373 0.91410 1.43211 1.52355 1.07811 1.10688 1.19357 1.03863 0.82532 1.41060 0.87987 1.25075 0.93619 0.97176 0.97254 1.70040 1.00515 1.40427 1.33354 0.86465 0.78068 0.81189 0.81567 1.20147 1.21535 1.20308 1.17574 0.85760 0.83958 0.85008 1.90618 1.49637 1.72119 1.29404 1.20232 0.95643 0.96040 0.96263 1.20293 0.97727 0.90977 0.98962 1.20428 0.97933 0.94470 1.01532 1.18734 0.94978 0.84052 0.99754 1.18055 0.90810 0.90097 0.95340 1.86123 1.46547 1.35392 1.54728 1.23148 0.92058 0.96893 0.95284 1.22246 1.04192 0.91805 1.03056 1.86889 1.70323 1.21552 1.42099 1.23373 0.92191 0.97255 0.85232 0.86966 1.22240 1.00512 1.02508 0.97568 1.21849 0.98397 0.91460 1.02302 0.94547 0.89950 0.94938 0.93767 0.93459 0.90708 0.87981 0.92478 0.84743 0.92814 0.92550 0.88287 0.81705 0.91530 0.90883 0.91725 0.89042 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.36 -6.56 8.48 -35.23 -0.30 -6.86 16 3 C 0.04 0.71 4.74 37.16 0.18 0.89 16 4 C 0.07 1.29 5.34 -4.04 -0.02 1.27 16 5 N -0.42 -10.61 2.61 -116.01 -0.30 -10.91 16 6 C -0.34 -9.47 8.81 -15.00 -0.13 -9.60 16 7 H 0.10 2.77 6.24 -52.49 -0.33 2.44 16 8 C 0.08 2.32 3.87 -17.45 -0.07 2.25 16 9 N -0.81 -24.20 12.09 55.50 0.67 -23.53 16 10 Si 0.90 22.40 29.66 -169.99 -5.04 17.36 16 11 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.49 12.69 7.01 -12.49 -0.09 12.60 16 15 O -0.54 -16.02 13.99 5.26 0.07 -15.95 16 16 C -0.08 -1.66 5.61 -104.94 -0.59 -2.25 16 17 C -0.06 -1.18 9.58 -39.29 -0.38 -1.55 16 18 C -0.14 -2.37 6.25 -104.15 -0.65 -3.02 16 19 C 0.07 1.21 6.88 -38.63 -0.27 0.94 16 20 C 0.10 1.76 6.70 -39.05 -0.26 1.50 16 21 O -0.31 -4.87 10.50 -19.76 -0.21 -5.08 16 22 C 0.02 0.24 9.79 101.05 0.99 1.23 16 23 C -0.19 -3.51 6.50 -39.12 -0.25 -3.77 16 24 O -0.29 -4.58 10.82 -20.07 -0.22 -4.80 16 25 C 0.08 0.86 4.32 -25.84 -0.11 0.75 16 26 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 27 C -0.17 -1.72 9.49 37.16 0.35 -1.36 16 28 C -0.10 -1.26 6.65 -26.50 -0.18 -1.43 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.05 0.78 7.13 -51.93 -0.37 0.41 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.10 1.85 3.97 -52.77 -0.21 1.64 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.13 2.71 7.83 -52.49 -0.41 2.30 16 38 H 0.05 0.58 6.76 -51.93 -0.35 0.23 16 39 H 0.06 0.58 8.02 -51.93 -0.42 0.17 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.17 2.72 0.73 -52.49 -0.04 2.68 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 0.98 7.92 -51.93 -0.41 0.57 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -35.64 368.39 -6.45 -42.09 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.32 Total: 2.20 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -0.36 Total: -0.07 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.37 Total: -34.44 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.65 Total: -32.68 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.04 Total: 17.36 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.64 -6.45 -42.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837235136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.854 kcal (2) G-P(sol) polarization free energy of solvation -35.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds