Wall clock time and date at job start Tue Mar 31 2020 19:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00130 * 2 1 4 4 C 1.53005 * 109.47506 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46700 * 64.99863 * 4 3 2 6 6 C 1.36902 * 119.99899 * 286.43107 * 5 4 3 7 7 H 1.07997 * 119.99742 * 37.02170 * 6 5 4 8 8 C 1.39019 * 119.99781 * 217.01911 * 6 5 4 9 9 N 1.31386 * 119.99908 * 32.75864 * 8 6 5 10 10 Si 1.86805 * 119.99956 * 212.75534 * 8 6 5 11 11 H 1.48499 * 109.46885 * 65.00363 * 10 8 6 12 12 H 1.48501 * 109.46970 * 185.00014 * 10 8 6 13 13 H 1.48501 * 109.47016 * 305.00202 * 10 8 6 14 14 C 1.34772 * 119.99504 * 106.43590 * 5 4 3 15 15 O 1.21625 * 119.99370 * 175.83828 * 14 5 4 16 16 C 1.47490 * 120.00383 * 355.83715 * 14 5 4 17 17 C 1.39866 * 120.25153 * 157.02687 * 16 14 5 18 18 C 1.37380 * 119.95535 * 179.97438 * 17 16 14 19 19 C 1.39055 * 120.97492 * 0.37221 * 18 17 16 20 20 C 1.39982 * 119.10517 * 359.43582 * 19 18 17 21 21 O 1.36000 * 119.83368 * 180.35294 * 20 19 18 22 22 C 1.42904 * 117.00388 * 184.38691 * 21 20 19 23 23 C 1.37917 * 120.33813 * 0.38133 * 20 19 18 24 24 O 1.36097 * 111.17758 * 178.94783 * 19 18 17 25 25 C 1.43767 * 109.22755 * 19.39789 * 24 19 18 26 26 H 1.09000 * 110.74731 * 213.69972 * 25 24 19 27 27 C 1.53002 * 110.74404 * 90.35513 * 25 24 19 28 28 C 1.51686 * 132.00369 * 180.88246 * 18 17 16 29 29 H 1.08996 * 109.47419 * 59.99959 * 1 2 3 30 30 H 1.09002 * 109.47036 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47175 * 299.99712 * 1 2 3 32 32 H 1.09000 * 109.47144 * 59.99751 * 3 2 1 33 33 H 1.09005 * 109.47018 * 300.00142 * 3 2 1 34 34 H 1.08994 * 109.46659 * 305.00041 * 4 3 2 35 35 H 1.08995 * 109.46908 * 184.99928 * 4 3 2 36 36 H 0.97000 * 119.99475 * 184.97652 * 9 8 6 37 37 H 1.07996 * 120.02264 * 359.96746 * 17 16 14 38 38 H 1.09006 * 109.47209 * 303.59255 * 22 21 20 39 39 H 1.09001 * 109.47033 * 63.58780 * 22 21 20 40 40 H 1.08997 * 109.46894 * 183.59159 * 22 21 20 41 41 H 1.07998 * 119.93469 * 180.02562 * 23 20 19 42 42 H 1.08996 * 109.47447 * 61.45777 * 27 25 24 43 43 H 1.09007 * 109.46604 * 181.45378 * 27 25 24 44 44 H 1.08997 * 109.47626 * 301.44919 * 27 25 24 45 45 H 1.08991 * 110.94037 * 282.53827 * 28 18 17 46 46 H 1.08999 * 110.93970 * 46.22987 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 3.7812 -0.7750 -1.4585 7 1 2.8818 -1.2517 -1.0977 8 6 4.7414 -1.5214 -2.1319 9 7 6.0132 -1.2124 -2.0170 10 14 4.2234 -2.9638 -3.2000 11 1 3.4215 -2.4674 -4.3470 12 1 5.4314 -3.6635 -3.7066 13 1 3.4058 -3.9070 -2.3956 14 6 4.5720 1.3125 -2.2020 15 8 5.0054 0.7850 -3.2087 16 6 4.6992 2.7706 -2.0202 17 6 5.6895 3.4824 -2.7050 18 6 5.8021 4.8405 -2.5315 19 6 4.9478 5.5258 -1.6747 20 6 3.9539 4.8148 -0.9920 21 8 3.1057 5.4714 -0.1558 22 6 2.1774 4.6750 0.5832 23 6 3.8306 3.4518 -1.1626 24 8 5.2499 6.8523 -1.6365 25 6 6.0250 7.1949 -2.7978 26 1 6.7487 7.9754 -2.5626 27 6 5.1144 7.6271 -3.9489 28 6 6.7421 5.8664 -3.1355 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8514 0.5682 0.8409 35 1 3.9785 2.1765 0.0889 36 1 6.6768 -1.6863 -2.5423 37 1 6.3651 2.9647 -3.3697 38 1 1.5821 4.0767 -0.1066 39 1 2.7219 4.0156 1.2591 40 1 1.5202 5.3250 1.1607 41 1 3.0612 2.9098 -0.6330 42 1 4.5516 8.5128 -3.6542 43 1 5.7208 7.8570 -4.8251 44 1 4.4224 6.8196 -4.1877 45 1 7.7230 5.8222 -2.6624 46 1 6.8248 5.7317 -4.2139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837235136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:08 Heat of formation + Delta-G solvation = -90.808981 kcal Electronic energy + Delta-G solvation = -30707.480803 eV Core-core repulsion = 26564.796545 eV Total energy + Delta-G solvation = -4142.684258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.48888 -40.95345 -39.86340 -38.69166 -37.40488 -36.20090 -34.29635 -33.77664 -31.89193 -30.84419 -30.72654 -28.40086 -27.78809 -27.11782 -26.59083 -24.54464 -23.57078 -22.70274 -22.44767 -21.38629 -19.20978 -18.63231 -18.22729 -18.01255 -17.54128 -17.24506 -16.99428 -16.53471 -16.43672 -16.31325 -15.89525 -15.82363 -15.72444 -15.01972 -14.81735 -14.71425 -14.51209 -14.06450 -13.75388 -13.59567 -13.48365 -13.24064 -13.11583 -13.01394 -12.89639 -12.80292 -12.71029 -12.51618 -12.43174 -12.19085 -12.13309 -12.08158 -11.98288 -11.91147 -11.45340 -10.81072 -10.48304 -10.15015 -9.54804 -9.22530 -8.91729 -8.25551 -5.84581 -0.12765 0.23259 1.37806 1.47304 1.50904 2.02500 2.18847 2.34880 2.37883 2.79474 2.93028 3.06674 3.26886 3.42761 3.61667 3.74557 3.90247 3.98077 4.07483 4.15753 4.17969 4.21785 4.28098 4.33508 4.36200 4.39885 4.45091 4.57326 4.59463 4.63847 4.67938 4.72978 4.76298 4.87219 4.90309 4.94319 4.98646 5.04268 5.17483 5.25977 5.33517 5.43466 5.64935 5.87280 6.25405 6.38284 6.40991 6.97279 7.19348 7.64553 8.26360 8.81307 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012439 B = 0.004537 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.491735 B = 6170.503336 C = 7953.159336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.398 6.398 3 C 0.049 3.951 4 C 0.061 3.939 5 N -0.436 5.436 6 C -0.356 4.356 7 H 0.103 0.897 8 C 0.033 3.967 9 N -0.852 5.852 10 Si 0.954 3.046 11 H -0.288 1.288 12 H -0.289 1.289 13 H -0.255 1.255 14 C 0.479 3.521 15 O -0.590 6.590 16 C -0.109 4.109 17 C -0.074 4.074 18 C -0.140 4.140 19 C 0.074 3.926 20 C 0.103 3.897 21 O -0.321 6.321 22 C 0.005 3.995 23 C -0.185 4.185 24 O -0.303 6.303 25 C 0.073 3.927 26 H 0.150 0.850 27 C -0.169 4.169 28 C -0.102 4.102 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.259 0.741 37 H 0.116 0.884 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.133 0.867 41 H 0.181 0.819 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.040 0.960 45 H 0.109 0.891 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 17.586 4.167 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C -0.028 4.028 4 C -0.061 4.061 5 N -0.154 5.154 6 C -0.482 4.482 7 H 0.120 0.880 8 C -0.175 4.175 9 N -0.487 5.487 10 Si 0.779 3.221 11 H -0.215 1.215 12 H -0.214 1.214 13 H -0.179 1.179 14 C 0.270 3.730 15 O -0.474 6.474 16 C -0.113 4.113 17 C -0.094 4.094 18 C -0.141 4.141 19 C 0.028 3.972 20 C 0.057 3.943 21 O -0.235 6.235 22 C -0.089 4.089 23 C -0.203 4.203 24 O -0.218 6.218 25 C 0.018 3.982 26 H 0.167 0.833 27 C -0.226 4.226 28 C -0.139 4.139 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.151 0.849 41 H 0.197 0.803 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.059 0.941 45 H 0.127 0.873 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.871 17.412 3.923 18.789 hybrid contribution -0.061 -1.310 -0.780 1.525 sum -5.932 16.102 3.144 17.445 Atomic orbital electron populations 1.22925 0.80309 1.03440 1.00694 1.88095 1.20775 1.27497 1.95337 1.23083 0.93087 0.85774 1.00868 1.22754 0.94265 1.00508 0.88596 1.43368 1.52380 1.07321 1.12373 1.19544 1.03607 0.83751 1.41296 0.87956 1.25864 0.93658 0.99598 0.98336 1.70123 1.01354 1.42513 1.34754 0.85625 0.77677 0.79027 0.79765 1.21502 1.21445 1.17935 1.18320 0.84377 0.85907 0.84389 1.90556 1.51583 1.73801 1.31467 1.19908 0.98363 0.93635 0.99394 1.20208 0.97664 0.92393 0.99126 1.20738 0.98637 0.93648 1.01098 1.19003 0.94421 0.85033 0.98726 1.18102 0.91152 0.89650 0.95384 1.86134 1.46707 1.36193 1.54451 1.23574 0.91881 0.97951 0.95451 1.22198 1.03632 0.92319 1.02197 1.86890 1.70642 1.20250 1.44033 1.23797 0.92496 0.97546 0.84396 0.83272 1.22265 1.00368 1.01854 0.98145 1.22048 0.98235 0.90230 1.03367 0.94191 0.89383 0.91836 0.88869 0.93660 0.91590 0.86416 0.93178 0.86592 0.92268 0.91535 0.84867 0.80254 0.90740 0.88104 0.94089 0.87303 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 11.01 113.37 1.25 1.80 16 2 O -0.40 -14.15 8.48 -148.98 -1.26 -15.41 16 3 C 0.05 1.53 4.74 71.98 0.34 1.87 16 4 C 0.06 2.42 5.34 86.38 0.46 2.88 16 5 N -0.44 -22.71 2.61 -639.19 -1.67 -24.38 16 6 C -0.36 -20.37 8.81 84.09 0.74 -19.62 16 7 H 0.10 5.71 6.24 -2.91 -0.02 5.70 16 8 C 0.03 1.98 3.87 84.95 0.33 2.31 16 9 N -0.85 -53.64 12.09 21.68 0.26 -53.38 16 10 Si 0.95 47.75 29.66 68.60 2.03 49.79 16 11 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 12 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 13 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 14 C 0.48 26.20 7.01 86.68 0.61 26.80 16 15 O -0.59 -37.40 13.99 -4.11 -0.06 -37.46 16 16 C -0.11 -4.82 5.61 -20.07 -0.11 -4.93 16 17 C -0.07 -3.01 9.58 22.46 0.22 -2.80 16 18 C -0.14 -4.55 6.25 -19.56 -0.12 -4.67 16 19 C 0.07 2.42 6.88 22.89 0.16 2.58 16 20 C 0.10 3.38 6.70 22.62 0.15 3.53 16 21 O -0.32 -9.07 10.50 -93.54 -0.98 -10.05 16 22 C 0.01 0.10 9.79 113.37 1.11 1.21 16 23 C -0.18 -6.60 6.50 22.57 0.15 -6.45 16 24 O -0.30 -8.58 10.82 -94.64 -1.02 -9.61 16 25 C 0.07 1.40 4.32 31.17 0.13 1.53 16 26 H 0.15 1.83 8.14 -2.39 -0.02 1.82 16 27 C -0.17 -2.85 9.49 71.98 0.68 -2.17 16 28 C -0.10 -2.23 6.65 30.74 0.20 -2.03 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.09 1.98 8.08 -2.39 -0.02 1.96 16 33 H 0.05 1.43 7.13 -2.38 -0.02 1.41 16 34 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.12 4.21 3.97 -3.18 -0.01 4.20 16 36 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 37 H 0.12 5.02 7.83 -2.91 -0.02 5.00 16 38 H 0.06 1.07 6.76 -2.38 -0.02 1.05 16 39 H 0.07 1.13 8.02 -2.39 -0.02 1.11 16 40 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.18 5.70 0.73 -2.91 0.00 5.70 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.04 0.89 8.12 -2.39 -0.02 0.87 16 45 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.11 2.06 7.92 -2.39 -0.02 2.04 16 Total: -1.00 -83.37 368.39 4.60 -78.77 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 1.01 Total: 19.87 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 6.30 Total: 1.87 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.41 Total: -77.76 kcal Atomic # 8 Polarization: -69.20 SS G_CDS: -3.33 Total: -72.53 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.79 kcal Total: -83.37 4.60 -78.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837235136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.044 kcal (2) G-P(sol) polarization free energy of solvation -83.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds