Wall clock time and date at job start Tue Mar 31 2020 19:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99785 * 2 1 4 4 C 1.53001 * 109.47034 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47162 * 64.99439 * 4 3 2 6 6 C 1.36901 * 120.00358 * 248.45031 * 5 4 3 7 7 H 1.08006 * 120.00146 * 311.97304 * 6 5 4 8 8 C 1.39016 * 120.00043 * 131.96658 * 6 5 4 9 9 N 1.31384 * 120.00155 * 345.46566 * 8 6 5 10 10 Si 1.86806 * 119.99969 * 165.46347 * 8 6 5 11 11 H 1.48505 * 109.46777 * 95.00059 * 10 8 6 12 12 H 1.48498 * 109.47191 * 214.99816 * 10 8 6 13 13 H 1.48495 * 109.46975 * 334.99950 * 10 8 6 14 14 C 1.34775 * 119.99760 * 68.45735 * 5 4 3 15 15 O 1.21628 * 119.99950 * 189.38275 * 14 5 4 16 16 C 1.47498 * 120.00162 * 9.37499 * 14 5 4 17 17 C 1.39859 * 120.25229 * 168.33625 * 16 14 5 18 18 C 1.37377 * 119.95829 * 180.02562 * 17 16 14 19 19 C 1.39059 * 120.96959 * 359.62068 * 18 17 16 20 20 C 1.39979 * 119.10761 * 0.56287 * 19 18 17 21 21 O 1.35999 * 119.83317 * 179.34744 * 20 19 18 22 22 C 1.42898 * 117.00242 * 172.74104 * 21 20 19 23 23 C 1.37915 * 120.33878 * 359.62943 * 20 19 18 24 24 O 1.36097 * 111.17206 * 181.03748 * 19 18 17 25 25 C 1.43765 * 109.23289 * 340.59800 * 24 19 18 26 26 H 1.09000 * 110.90518 * 146.37630 * 25 24 19 27 27 C 1.53002 * 110.74542 * 269.65401 * 25 24 19 28 28 C 1.51684 * 132.00719 * 179.09571 * 18 17 16 29 29 H 1.09003 * 109.46660 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47251 * 299.99927 * 1 2 3 31 31 H 1.08999 * 109.47367 * 60.00527 * 1 2 3 32 32 H 1.08990 * 109.47538 * 60.00184 * 3 2 1 33 33 H 1.09002 * 109.46891 * 299.99249 * 3 2 1 34 34 H 1.09002 * 109.46913 * 304.99486 * 4 3 2 35 35 H 1.08997 * 109.47301 * 185.00024 * 4 3 2 36 36 H 0.96999 * 120.00275 * 185.01926 * 9 8 6 37 37 H 1.08003 * 120.01864 * 0.04793 * 17 16 14 38 38 H 1.08997 * 109.47405 * 57.34874 * 22 21 20 39 39 H 1.08998 * 109.47405 * 177.35600 * 22 21 20 40 40 H 1.09003 * 109.46740 * 297.35431 * 22 21 20 41 41 H 1.08004 * 119.93211 * 180.02562 * 23 20 19 42 42 H 1.09006 * 109.46818 * 173.37131 * 27 25 24 43 43 H 1.08997 * 109.46786 * 293.37095 * 27 25 24 44 44 H 1.08993 * 109.46939 * 53.37490 * 27 25 24 45 45 H 1.08998 * 110.93905 * 313.79162 * 28 18 17 46 46 H 1.08996 * 110.93704 * 77.48299 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.5168 -0.6931 -1.2404 7 1 5.2895 -0.9416 -0.5278 8 6 4.0719 -1.6502 -2.1451 9 7 2.9562 -1.4561 -2.8112 10 14 5.0603 -3.2124 -2.4138 11 1 4.5228 -4.2932 -1.5487 12 1 4.9608 -3.6225 -3.8375 13 1 6.4830 -2.9635 -2.0686 14 6 3.8480 1.2316 -2.4166 15 8 4.0514 0.6600 -3.4708 16 6 3.4614 2.6551 -2.4122 17 6 3.5618 3.4162 -3.5812 18 6 3.2007 4.7416 -3.5701 19 6 2.7256 5.3440 -2.4103 20 6 2.6285 4.5840 -1.2388 21 8 2.1785 5.1618 -0.0929 22 6 1.9517 4.2987 1.0232 23 6 2.9924 3.2538 -1.2393 24 8 2.4073 6.6490 -2.6292 25 6 3.0700 7.1046 -3.8209 26 1 2.4587 7.8352 -4.3508 27 6 4.4435 7.6904 -3.4870 28 6 3.2146 5.8066 -4.6500 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6886 1.8463 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.8514 0.5683 0.8410 35 1 3.9785 2.1765 0.0889 36 1 2.6075 -2.1542 -3.3873 37 1 3.9228 2.9621 -4.4922 38 1 2.8715 3.7654 1.2629 39 1 1.6405 4.8913 1.8835 40 1 1.1699 3.5810 0.7745 41 1 2.9145 2.6734 -0.3318 42 1 4.9747 7.9202 -4.4107 43 1 4.3174 8.6025 -2.9037 44 1 5.0167 6.9657 -2.9089 45 1 4.1582 5.7959 -5.1955 46 1 2.3718 5.6829 -5.3300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837235139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:11 Heat of formation + Delta-G solvation = -56.823313 kcal Electronic energy + Delta-G solvation = -31121.478596 eV Core-core repulsion = 26980.268067 eV Total energy + Delta-G solvation = -4141.210529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.59034 -41.17917 -39.79769 -38.61669 -37.36833 -36.32055 -34.36716 -33.75993 -32.06691 -30.86269 -30.75228 -28.25080 -27.74699 -27.07073 -26.64063 -24.62154 -23.57063 -22.71365 -22.44904 -21.21989 -19.23009 -18.73891 -18.28404 -18.00879 -17.45709 -17.19425 -16.82537 -16.80404 -16.37128 -16.12020 -15.85145 -15.81514 -15.67283 -15.15068 -14.81186 -14.59560 -14.45972 -14.03861 -13.68221 -13.50935 -13.48676 -13.20891 -13.14861 -13.06468 -12.92786 -12.76341 -12.69715 -12.58849 -12.36018 -12.19572 -12.16483 -11.95968 -11.88739 -11.58082 -11.47011 -10.77189 -10.44573 -10.08552 -9.48100 -9.09912 -8.88154 -8.07977 -5.93675 -0.09431 0.26331 1.40498 1.46681 1.54238 2.08344 2.21669 2.36194 2.38266 2.85503 2.98677 3.08014 3.27255 3.44087 3.64785 3.76657 3.88048 3.98134 4.06256 4.07985 4.20193 4.21939 4.25482 4.31834 4.36558 4.42630 4.45617 4.50569 4.55494 4.64683 4.68759 4.73830 4.77011 4.83343 4.88810 4.89817 4.96197 5.06613 5.19441 5.26239 5.35641 5.46454 5.54763 5.88837 6.25466 6.42495 6.43438 7.07393 7.20063 7.65034 8.32209 8.97650 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.004483 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.124417 B = 6243.896894 C = 7528.087611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.027 3.973 4 C 0.074 3.926 5 N -0.441 5.441 6 C -0.364 4.364 7 H 0.085 0.915 8 C 0.025 3.975 9 N -0.846 5.846 10 Si 0.970 3.030 11 H -0.267 1.267 12 H -0.296 1.296 13 H -0.263 1.263 14 C 0.496 3.504 15 O -0.577 6.577 16 C -0.117 4.117 17 C -0.075 4.075 18 C -0.145 4.145 19 C 0.073 3.927 20 C 0.095 3.905 21 O -0.321 6.321 22 C 0.003 3.997 23 C -0.214 4.214 24 O -0.305 6.305 25 C 0.072 3.928 26 H 0.148 0.852 27 C -0.168 4.168 28 C -0.101 4.101 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.024 0.976 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.254 0.746 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.134 0.866 40 H 0.059 0.941 41 H 0.213 0.787 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.041 0.959 45 H 0.112 0.888 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.046 17.064 5.402 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.050 4.050 4 C -0.049 4.049 5 N -0.161 5.161 6 C -0.492 4.492 7 H 0.103 0.897 8 C -0.183 4.183 9 N -0.479 5.479 10 Si 0.795 3.205 11 H -0.193 1.193 12 H -0.222 1.222 13 H -0.187 1.187 14 C 0.286 3.714 15 O -0.459 6.459 16 C -0.120 4.120 17 C -0.094 4.094 18 C -0.146 4.146 19 C 0.027 3.973 20 C 0.050 3.950 21 O -0.235 6.235 22 C -0.091 4.091 23 C -0.232 4.232 24 O -0.220 6.220 25 C 0.017 3.983 26 H 0.166 0.834 27 C -0.225 4.225 28 C -0.138 4.138 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.063 0.937 37 H 0.137 0.863 38 H 0.084 0.916 39 H 0.152 0.848 40 H 0.077 0.923 41 H 0.229 0.771 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.060 0.940 45 H 0.130 0.870 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.098 16.891 4.883 17.853 hybrid contribution 0.087 -1.364 -0.542 1.470 sum -3.011 15.527 4.341 16.401 Atomic orbital electron populations 1.22785 0.80904 1.02856 0.99956 1.88126 1.20104 1.27473 1.95172 1.23869 0.94559 0.85758 1.00772 1.22498 0.92551 0.99646 0.90159 1.43101 1.54723 1.13988 1.04316 1.19287 1.19998 0.88040 1.21872 0.89730 1.26140 0.95368 1.01007 0.95806 1.70034 1.19359 1.32823 1.25727 0.85311 0.79489 0.78927 0.76806 1.19281 1.22211 1.18670 1.18367 0.82554 0.85510 0.84920 1.90571 1.53854 1.69500 1.31980 1.20031 1.02887 0.94417 0.94711 1.20223 0.99526 0.92179 0.97493 1.20727 1.03754 0.94572 0.95534 1.19090 1.00514 0.85732 0.91980 1.18207 1.00697 0.91040 0.85082 1.86127 1.81250 1.37034 1.19134 1.23687 1.01554 0.96322 0.87538 1.23784 1.02768 0.93986 1.02640 1.86880 1.66220 1.21896 1.47000 1.23789 0.95667 0.96327 0.82552 0.83440 1.22262 0.95073 1.01372 1.03826 1.22037 1.05722 0.89924 0.96104 0.89956 0.91457 0.95714 0.89019 0.93819 0.88727 0.87288 0.93711 0.86330 0.91639 0.84761 0.92259 0.77133 0.88195 0.90636 0.94019 0.86971 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 11.01 113.37 1.25 2.27 16 2 O -0.39 -16.45 10.65 -148.98 -1.59 -18.03 16 3 C 0.03 0.97 3.93 71.98 0.28 1.25 16 4 C 0.07 2.88 5.37 86.38 0.46 3.34 16 5 N -0.44 -22.86 2.52 -729.72 -1.84 -24.70 16 6 C -0.36 -20.60 9.11 84.09 0.77 -19.83 16 7 H 0.09 4.52 7.87 -2.91 -0.02 4.50 16 8 C 0.03 1.46 4.52 84.95 0.38 1.84 16 9 N -0.85 -52.83 11.50 21.68 0.25 -52.58 16 10 Si 0.97 46.32 29.58 68.60 2.03 48.35 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 13 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 14 C 0.50 27.19 6.73 86.68 0.58 27.77 16 15 O -0.58 -36.81 13.91 -4.12 -0.06 -36.86 16 16 C -0.12 -5.20 5.62 -20.07 -0.11 -5.31 16 17 C -0.07 -3.04 9.58 22.46 0.22 -2.82 16 18 C -0.14 -4.76 6.25 -19.56 -0.12 -4.88 16 19 C 0.07 2.44 6.84 22.89 0.16 2.59 16 20 C 0.10 3.22 6.69 22.62 0.15 3.37 16 21 O -0.32 -9.37 10.50 -93.53 -0.98 -10.35 16 22 C 0.00 0.06 9.17 113.37 1.04 1.10 16 23 C -0.21 -7.82 4.97 22.57 0.11 -7.71 16 24 O -0.31 -8.87 10.82 -94.64 -1.02 -9.89 16 25 C 0.07 1.41 4.32 31.18 0.13 1.54 16 26 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 27 C -0.17 -2.84 9.50 71.98 0.68 -2.16 16 28 C -0.10 -2.24 6.65 30.74 0.20 -2.04 16 29 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 2.31 5.72 -2.39 -0.01 2.29 16 33 H 0.04 1.75 5.09 -2.39 -0.01 1.74 16 34 H 0.09 3.46 7.91 -2.39 -0.02 3.44 16 35 H 0.11 3.60 5.10 -2.39 -0.01 3.59 16 36 H 0.25 15.33 8.32 -92.71 -0.77 14.56 16 37 H 0.12 5.07 7.70 -2.91 -0.02 5.04 16 38 H 0.07 1.18 6.84 -2.39 -0.02 1.16 16 39 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 1.15 6.13 -2.39 -0.01 1.14 16 41 H 0.21 6.92 0.06 -65.22 0.00 6.91 16 42 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.04 0.90 8.07 -2.39 -0.02 0.88 16 45 H 0.11 2.06 7.92 -2.39 -0.02 2.04 16 46 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -83.94 362.93 4.00 -79.94 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 1.02 Total: 23.80 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 6.19 Total: 0.33 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -1.59 Total: -77.28 kcal Atomic # 8 Polarization: -71.49 SS G_CDS: -3.65 Total: -75.14 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -83.94 4.00 -79.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837235139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.116 kcal (2) G-P(sol) polarization free energy of solvation -83.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds