Wall clock time and date at job start Tue Mar 31 2020 18:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46989 * 2 1 4 4 N 1.46509 * 109.47008 * 179.97438 * 3 2 1 5 5 C 1.34769 * 120.00202 * 179.97438 * 4 3 2 6 6 O 1.21287 * 119.99664 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00325 * 179.97438 * 5 4 3 8 8 C 1.53000 * 109.47511 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47369 * 180.02562 * 8 7 5 10 10 O 1.45192 * 109.46831 * 179.97438 * 9 8 7 11 11 C 1.34763 * 116.99726 * 179.97438 * 10 9 8 12 12 O 1.21513 * 119.99703 * 0.02562 * 11 10 9 13 13 C 1.47398 * 120.00219 * 180.02562 * 11 10 9 14 14 C 1.39729 * 120.19992 * 359.97438 * 13 11 10 15 15 C 1.37805 * 119.91272 * 179.97438 * 14 13 11 16 16 C 1.38588 * 120.33007 * 0.02562 * 15 14 13 17 17 C 1.38028 * 120.41707 * 359.97438 * 16 15 14 18 18 C 1.38832 * 120.07606 * 359.97438 * 17 16 15 19 19 O 1.35505 * 120.16557 * 179.97438 * 18 17 16 20 20 C 1.34808 * 116.99939 * 354.39821 * 19 18 17 21 21 H 1.08001 * 120.00267 * 5.06438 * 20 19 18 22 22 C 1.38707 * 119.99753 * 185.06265 * 20 19 18 23 23 N 1.31517 * 119.99994 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99839 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47364 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47284 * 119.99880 * 24 22 20 27 27 H 1.48505 * 109.47333 * 240.00171 * 24 22 20 28 28 H 1.09003 * 109.46728 * 59.99956 * 1 2 3 29 29 H 1.08994 * 109.47072 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47251 * 300.00051 * 1 2 3 31 31 H 1.09005 * 109.47089 * 240.00225 * 2 1 3 32 32 H 1.08994 * 109.46869 * 120.00326 * 2 1 3 33 33 H 1.09000 * 109.47089 * 60.00661 * 3 2 1 34 34 H 1.08994 * 109.47581 * 299.99890 * 3 2 1 35 35 H 0.97000 * 119.99677 * 0.02562 * 4 3 2 36 36 H 1.08997 * 109.47053 * 60.00128 * 7 5 4 37 37 H 1.09007 * 109.47212 * 300.00495 * 7 5 4 38 38 H 1.08997 * 109.47295 * 59.99740 * 8 7 5 39 39 H 1.09007 * 109.46849 * 300.00182 * 8 7 5 40 40 H 1.09000 * 109.46665 * 60.00010 * 9 8 7 41 41 H 1.08994 * 109.46869 * 299.99935 * 9 8 7 42 42 H 1.07997 * 120.04805 * 0.26151 * 14 13 11 43 43 H 1.07992 * 119.83705 * 180.02562 * 15 14 13 44 44 H 1.08000 * 119.79247 * 179.97438 * 16 15 14 45 45 H 1.08000 * 119.96099 * 180.02562 * 17 16 15 46 46 H 0.97001 * 119.99735 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1790 2.6096 0.0002 6 8 3.5725 3.6600 -0.0002 7 6 5.6859 2.6097 0.0014 8 6 6.1960 4.0521 0.0013 9 6 7.7260 4.0521 0.0019 10 8 8.2099 5.4211 0.0012 11 6 9.5459 5.5976 0.0021 12 8 10.2861 4.6339 0.0030 13 6 10.1094 6.9597 0.0020 14 6 9.2621 8.0708 0.0004 15 6 9.7952 9.3415 0.0009 16 6 11.1690 9.5241 0.0024 17 6 12.0186 8.4362 0.0040 18 6 11.4999 7.1484 0.0046 19 8 12.3322 6.0791 0.0056 20 6 13.6515 6.3304 -0.1113 21 1 14.0087 7.3496 -0.1179 22 6 14.5503 5.2799 -0.2230 23 7 14.1154 4.0387 -0.2154 24 14 16.3785 5.6280 -0.3843 25 1 16.6064 7.0953 -0.3671 26 1 17.1038 5.0007 0.7497 27 1 16.8787 5.0648 -1.6641 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9900 0.6024 0.0006 36 1 6.0500 2.0952 -0.8878 37 1 6.0486 2.0965 0.8921 38 1 5.8319 4.5663 0.8907 39 1 5.8333 4.5657 -0.8892 40 1 8.0896 3.5381 -0.8879 41 1 8.0889 3.5385 0.8921 42 1 8.1908 7.9340 0.0035 43 1 9.1393 10.1994 0.0001 44 1 11.5775 10.5239 0.0023 45 1 13.0880 8.5870 0.0055 46 1 14.7440 3.3041 -0.2932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840217909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:16 Heat of formation + Delta-G solvation = -165.368583 kcal Electronic energy + Delta-G solvation = -27341.249955 eV Core-core repulsion = 23195.332550 eV Total energy + Delta-G solvation = -4145.917405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.55667 -40.82779 -40.35589 -38.14023 -37.49092 -36.82096 -34.81615 -34.36461 -33.51053 -32.27515 -30.64201 -29.06565 -27.45780 -26.71036 -25.00757 -23.40052 -22.86975 -22.52772 -21.87814 -21.15919 -19.90993 -19.20434 -18.45106 -17.97520 -17.69448 -17.20401 -17.03190 -16.91969 -16.35179 -16.13498 -16.09472 -15.58518 -15.52872 -15.26903 -14.91584 -14.84686 -14.40460 -13.95085 -13.79997 -13.76897 -13.57413 -13.46603 -13.28054 -13.02615 -12.86856 -12.71886 -12.57390 -12.47167 -12.28204 -12.17868 -12.08631 -12.04271 -11.76500 -11.59473 -11.45332 -11.08072 -10.94231 -10.86305 -10.12562 -9.92635 -9.12058 -8.48105 -6.18992 -0.04601 0.68569 1.34359 1.44473 1.54073 1.59979 1.65531 1.74372 2.14667 2.26701 2.82222 3.14885 3.36919 3.63436 3.79859 3.86451 3.91581 4.06352 4.07979 4.13672 4.24088 4.27091 4.34852 4.37300 4.39690 4.52218 4.62305 4.65549 4.65747 4.75686 4.87156 4.92642 5.00896 5.05135 5.10802 5.14363 5.14463 5.23349 5.32931 5.43998 5.47413 5.48843 5.60996 5.66326 5.93955 6.11959 6.52181 6.90701 6.99571 7.22804 7.71745 8.72311 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.001925 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.562945 B =14544.593338 C =16189.902690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.115 3.885 4 N -0.721 5.721 5 C 0.513 3.487 6 O -0.585 6.585 7 C -0.132 4.132 8 C -0.090 4.090 9 C 0.064 3.936 10 O -0.357 6.357 11 C 0.499 3.501 12 O -0.529 6.529 13 C -0.239 4.239 14 C -0.014 4.014 15 C -0.205 4.205 16 C -0.027 4.027 17 C -0.255 4.255 18 C 0.158 3.842 19 O -0.187 6.187 20 C -0.427 4.427 21 H 0.111 0.889 22 C -0.020 4.020 23 N -0.903 5.903 24 Si 1.024 2.976 25 H -0.244 1.244 26 H -0.269 1.269 27 H -0.269 1.269 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.418 0.582 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.153 0.847 43 H 0.164 0.836 44 H 0.161 0.839 45 H 0.132 0.868 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.517 -3.251 0.194 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.009 4.009 4 N -0.374 5.374 5 C 0.301 3.699 6 O -0.466 6.466 7 C -0.172 4.172 8 C -0.128 4.128 9 C -0.010 4.010 10 O -0.275 6.275 11 C 0.347 3.653 12 O -0.419 6.419 13 C -0.241 4.241 14 C -0.032 4.032 15 C -0.223 4.223 16 C -0.045 4.045 17 C -0.274 4.274 18 C 0.103 3.897 19 O -0.089 6.089 20 C -0.503 4.503 21 H 0.129 0.871 22 C -0.220 4.220 23 N -0.538 5.538 24 Si 0.843 3.157 25 H -0.167 1.167 26 H -0.194 1.194 27 H -0.194 1.194 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.255 0.745 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.171 0.829 43 H 0.182 0.818 44 H 0.179 0.821 45 H 0.150 0.850 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.734 -3.327 0.202 21.000 hybrid contribution 1.150 -0.833 -0.041 1.421 sum -19.584 -4.160 0.161 20.022 Atomic orbital electron populations 1.21701 0.94305 1.02774 1.02166 1.21690 0.97146 0.93947 1.03703 1.21457 0.79315 0.98763 1.01361 1.45965 1.07700 1.08832 1.74865 1.20910 0.90761 0.83475 0.74794 1.90711 1.71469 1.33057 1.51324 1.21531 0.90588 0.97694 1.07364 1.21128 0.90058 0.97273 1.04338 1.23141 0.95413 0.79897 1.02538 1.86475 1.23060 1.32921 1.85069 1.21367 0.80465 0.90352 0.73164 1.90977 1.60734 1.43361 1.46853 1.18500 0.90594 0.91210 1.23834 1.21387 0.99553 0.90852 0.91409 1.21213 0.95306 0.96975 1.08786 1.21529 0.93429 0.98577 0.90943 1.21297 1.01573 0.91332 1.13223 1.19957 0.89823 0.88777 0.91179 1.84142 1.18042 1.29725 1.77005 1.22133 0.79148 0.95864 1.53135 0.87134 1.26787 1.06033 0.93851 0.95327 1.70303 1.37464 0.99805 1.46231 0.84469 0.72942 0.79889 0.78446 1.16722 1.19368 1.19429 0.92598 0.91133 0.92585 0.90303 0.90294 0.92696 0.92700 0.74509 0.86064 0.86032 0.90830 0.90876 0.91573 0.91492 0.82906 0.81817 0.82140 0.85025 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.13 -0.92 6.05 30.60 0.19 -0.74 16 3 C 0.11 1.52 5.67 86.38 0.49 2.01 16 4 N -0.72 -9.53 5.56 -463.05 -2.57 -12.10 16 5 C 0.51 10.28 7.83 87.66 0.69 10.97 16 6 O -0.59 -17.29 15.98 -3.05 -0.05 -17.34 16 7 C -0.13 -2.17 5.70 29.85 0.17 -2.00 16 8 C -0.09 -2.16 4.88 30.60 0.15 -2.01 16 9 C 0.06 1.98 5.48 71.98 0.39 2.37 16 10 O -0.36 -13.73 9.47 -56.73 -0.54 -14.27 16 11 C 0.50 23.99 7.89 70.23 0.55 24.55 16 12 O -0.53 -30.63 14.96 26.79 0.40 -30.22 16 13 C -0.24 -10.96 5.89 -20.00 -0.12 -11.08 16 14 C -0.01 -0.48 9.61 22.53 0.22 -0.27 16 15 C -0.20 -5.87 10.02 22.25 0.22 -5.65 16 16 C -0.03 -0.83 10.03 22.30 0.22 -0.61 16 17 C -0.26 -10.71 9.16 22.36 0.20 -10.51 16 18 C 0.16 8.13 6.66 22.92 0.15 8.28 16 19 O -0.19 -11.67 7.84 1.07 0.01 -11.66 16 20 C -0.43 -25.16 9.49 67.93 0.64 -24.52 16 21 H 0.11 5.79 5.21 -2.91 -0.02 5.78 16 22 C -0.02 -1.17 5.49 84.85 0.47 -0.70 16 23 N -0.90 -57.29 13.67 21.62 0.30 -57.00 16 24 Si 1.02 42.87 29.55 68.60 2.03 44.89 16 25 H -0.24 -9.21 7.11 99.48 0.71 -8.50 16 26 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 0.45 8.14 -2.38 -0.02 0.44 16 32 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.42 2.77 8.47 -92.71 -0.79 1.99 16 36 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.07 1.88 8.10 -2.39 -0.02 1.86 16 39 H 0.07 1.88 8.10 -2.38 -0.02 1.86 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.15 4.41 7.61 -2.91 -0.02 4.39 16 43 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 44 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 45 H 0.13 5.48 5.64 -2.91 -0.02 5.46 16 46 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -88.09 395.22 5.14 -82.95 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.21 Total: 25.03 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 5.36 Total: -10.26 kcal Atomic # 7 Polarization: -66.82 SS G_CDS: -2.28 Total: -69.10 kcal Atomic # 8 Polarization: -73.32 SS G_CDS: -0.18 Total: -73.50 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -88.09 5.14 -82.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840217909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.422 kcal (2) G-P(sol) polarization free energy of solvation -88.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds