Wall clock time and date at job start Tue Mar 31 2020 18:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46886 * 2 1 4 4 N 1.46502 * 109.47147 * 120.00058 * 2 1 3 5 5 C 1.34777 * 120.00026 * 155.00022 * 4 2 1 6 6 O 1.21285 * 119.99809 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99828 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47005 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47402 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47500 * 179.97438 * 9 8 7 11 11 O 1.20825 * 119.99771 * 0.02562 * 10 9 8 12 12 O 1.34264 * 120.00053 * 179.97438 * 10 9 8 13 13 C 1.35919 * 116.99931 * 185.33860 * 12 10 9 14 14 C 1.38818 * 120.02186 * 246.47271 * 13 12 10 15 15 C 1.38189 * 120.08648 * 179.74469 * 14 13 12 16 16 C 1.38158 * 120.12033 * 0.50567 * 15 14 13 17 17 C 1.38897 * 120.04038 * 359.76856 * 16 15 14 18 18 O 1.35750 * 120.04541 * 179.97438 * 17 16 15 19 19 C 1.34826 * 117.00491 * 185.96880 * 18 17 16 20 20 H 1.08006 * 119.99551 * 354.89514 * 19 18 17 21 21 C 1.38652 * 120.00306 * 174.90371 * 19 18 17 22 22 N 1.31551 * 119.99796 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99887 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47353 * 90.00066 * 23 21 19 25 25 H 1.48500 * 109.46582 * 209.99500 * 23 21 19 26 26 H 1.48499 * 109.47032 * 329.99253 * 23 21 19 27 27 C 1.38572 * 120.02216 * 66.74099 * 13 12 10 28 28 H 1.09003 * 109.46905 * 299.99746 * 1 2 3 29 29 H 1.08996 * 109.47064 * 59.99674 * 1 2 3 30 30 H 1.08994 * 109.46966 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47016 * 239.99787 * 2 1 3 32 32 H 1.09003 * 109.47141 * 60.00399 * 3 2 1 33 33 H 1.09003 * 109.46385 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47019 * 299.99933 * 3 2 1 35 35 H 0.96999 * 119.99906 * 334.99672 * 4 2 1 36 36 H 1.08997 * 109.47482 * 60.00120 * 7 5 4 37 37 H 1.09003 * 109.47528 * 300.00108 * 7 5 4 38 38 H 1.08996 * 109.47703 * 60.00108 * 8 7 5 39 39 H 1.08999 * 109.46955 * 299.99763 * 8 7 5 40 40 H 1.09001 * 109.47256 * 59.99179 * 9 8 7 41 41 H 1.09003 * 109.47111 * 299.99845 * 9 8 7 42 42 H 1.08007 * 119.96006 * 359.97438 * 14 13 12 43 43 H 1.07995 * 119.94824 * 180.23004 * 15 14 13 44 44 H 1.08000 * 119.98500 * 179.75135 * 16 15 14 45 45 H 0.97009 * 119.99879 * 180.02562 * 22 21 19 46 46 H 1.07999 * 120.05913 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2403 -1.2592 1.1944 6 8 3.9355 -1.1995 0.2023 7 6 3.7429 -1.9691 2.4250 8 6 5.1456 -2.5191 2.1594 9 6 5.6557 -3.2404 3.4086 10 6 7.0371 -3.7827 3.1468 11 8 7.5603 -3.6096 2.0715 12 8 7.6869 -4.4573 4.1087 13 6 8.9699 -4.8222 3.8474 14 6 9.2980 -6.1651 3.7208 15 6 10.6009 -6.5374 3.4499 16 6 11.5830 -5.5751 3.3145 17 6 11.2615 -4.2302 3.4459 18 8 12.2265 -3.2847 3.3134 19 6 11.8742 -2.0097 3.5742 20 1 10.8445 -1.7679 3.7927 21 6 12.8337 -1.0088 3.5617 22 7 14.0879 -1.3034 3.2959 23 14 12.3452 0.7578 3.9223 24 1 12.4548 1.0138 5.3809 25 1 13.2483 1.6805 3.1886 26 1 10.9445 0.9834 3.4839 27 6 9.9523 -3.8543 3.7127 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.4622 -0.7387 1.9895 36 1 3.0704 -2.7910 2.6704 37 1 3.7797 -1.2684 3.2592 38 1 5.8180 -1.6970 1.9143 39 1 5.1092 -3.2197 1.3252 40 1 4.9832 -4.0626 3.6534 41 1 5.6920 -2.5401 4.2431 42 1 8.5332 -6.9199 3.8304 43 1 10.8529 -7.5826 3.3481 44 1 12.6013 -5.8687 3.1068 45 1 14.7593 -0.6032 3.2876 46 1 9.6996 -2.8092 3.8148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842426610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:11 Heat of formation + Delta-G solvation = -132.402726 kcal Electronic energy + Delta-G solvation = -27699.323909 eV Core-core repulsion = 23554.836010 eV Total energy + Delta-G solvation = -4144.487898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.91179 -40.11254 -38.79516 -37.21588 -36.40739 -35.70371 -34.46643 -32.29279 -31.98701 -29.94959 -29.06959 -28.53254 -27.65351 -25.44544 -24.22252 -22.35994 -21.62998 -21.26706 -20.61815 -20.24133 -18.27889 -17.90562 -17.48419 -16.81858 -16.55830 -16.33982 -15.83696 -15.69579 -15.11838 -14.87269 -14.47595 -14.33131 -14.16516 -13.86261 -13.64688 -13.43998 -13.31691 -13.00476 -12.92605 -12.72404 -12.59833 -12.27326 -12.26010 -11.85778 -11.79576 -11.69669 -11.53149 -11.37837 -11.25613 -11.02695 -10.99804 -10.83524 -10.48950 -10.38809 -10.23771 -10.03606 -9.51026 -9.44178 -8.85750 -8.11720 -7.33109 -6.46629 -4.05818 1.78567 2.23357 2.40352 2.43469 2.77135 3.11227 3.13965 3.18246 3.19503 3.96243 4.29999 4.45195 4.48975 4.60447 4.67677 4.73418 4.81423 4.82515 5.05853 5.09825 5.13174 5.18521 5.22279 5.25780 5.30523 5.35145 5.38803 5.49607 5.61924 5.69011 5.80101 5.86528 5.89461 6.02377 6.13200 6.17517 6.22244 6.33673 6.58644 6.92340 7.03378 7.10921 7.15849 7.16966 7.34874 7.62354 7.97046 7.97359 8.19452 8.98510 9.65000 10.70904 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010400 B = 0.002467 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.680766 B =11348.057024 C =13530.857223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 C -0.165 4.165 4 N -0.732 5.732 5 C 0.511 3.489 6 O -0.531 6.531 7 C -0.139 4.139 8 C -0.098 4.098 9 C -0.109 4.109 10 C 0.449 3.551 11 O -0.478 6.478 12 O -0.298 6.298 13 C 0.123 3.877 14 C -0.212 4.212 15 C -0.064 4.064 16 C -0.189 4.189 17 C 0.165 3.835 18 O -0.171 6.171 19 C -0.392 4.392 20 H 0.090 0.910 21 C 0.041 3.959 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.267 1.267 27 C -0.235 4.235 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.399 0.601 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.271 0.729 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.462 0.172 0.658 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 C -0.223 4.223 4 N -0.385 5.385 5 C 0.298 3.702 6 O -0.406 6.406 7 C -0.179 4.179 8 C -0.135 4.135 9 C -0.147 4.147 10 C 0.291 3.709 11 O -0.362 6.362 12 O -0.214 6.214 13 C 0.082 3.918 14 C -0.231 4.231 15 C -0.083 4.083 16 C -0.208 4.208 17 C 0.111 3.889 18 O -0.073 6.073 19 C -0.468 4.468 20 H 0.108 0.892 21 C -0.163 4.163 22 N -0.494 5.494 23 Si 0.765 3.235 24 H -0.198 1.198 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.255 4.255 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.233 0.767 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.081 0.919 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -26.299 0.389 -0.530 26.307 hybrid contribution -0.545 0.965 0.616 1.268 sum -26.844 1.355 0.085 26.878 Atomic orbital electron populations 1.22073 0.94158 1.02583 1.02940 1.20938 0.93876 0.93156 0.89062 1.22195 1.02391 0.95711 1.02021 1.46164 1.18152 1.57435 1.16786 1.20749 0.81077 0.78398 0.89997 1.90765 1.55784 1.58946 1.35120 1.21659 0.98484 1.01230 0.96562 1.21189 0.94307 1.01533 0.96519 1.21365 0.90284 1.01885 1.01128 1.23955 0.88564 0.75797 0.82542 1.90761 1.67813 1.52735 1.24879 1.84497 1.25412 1.67388 1.44096 1.18237 0.80311 0.92785 1.00472 1.20422 0.97458 0.93477 1.11758 1.20487 0.91728 0.98298 0.97752 1.20325 1.00080 0.90095 1.10305 1.19117 0.87776 0.89915 0.92131 1.83992 1.32965 1.15815 1.74571 1.21305 0.95686 0.80210 1.49592 0.89237 1.25284 0.94630 0.99926 0.96495 1.70036 1.00820 1.34075 1.44491 0.85714 0.78825 0.80235 0.78731 1.19765 1.20097 1.19135 1.21188 0.93154 0.99747 1.11424 0.92081 0.90932 0.91991 0.89440 0.92520 0.91905 0.91651 0.76707 0.88543 0.88474 0.89842 0.89998 0.87619 0.87487 0.86715 0.85977 0.85893 0.91919 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 9.38 37.16 0.35 -0.31 16 2 C 0.13 0.93 3.18 -67.93 -0.22 0.71 16 3 C -0.16 -1.18 9.48 37.16 0.35 -0.83 16 4 N -0.73 -4.88 5.08 -53.80 -0.27 -5.15 16 5 C 0.51 5.04 7.79 -10.99 -0.09 4.96 16 6 O -0.53 -7.95 15.64 5.55 0.09 -7.86 16 7 C -0.14 -0.98 5.70 -27.89 -0.16 -1.14 16 8 C -0.10 -1.08 3.79 -26.73 -0.10 -1.18 16 9 C -0.11 -1.11 5.81 -27.88 -0.16 -1.27 16 10 C 0.45 7.46 7.72 36.01 0.28 7.73 16 11 O -0.48 -10.01 15.30 -18.75 -0.29 -10.29 16 12 O -0.30 -5.37 10.04 -23.60 -0.24 -5.61 16 13 C 0.12 2.56 5.34 -39.24 -0.21 2.35 16 14 C -0.21 -3.98 9.98 -39.38 -0.39 -4.38 16 15 C -0.06 -1.18 10.03 -39.63 -0.40 -1.58 16 16 C -0.19 -4.10 9.99 -39.37 -0.39 -4.49 16 17 C 0.17 4.19 6.64 -39.13 -0.26 3.93 16 18 O -0.17 -5.01 9.76 0.06 0.00 -5.01 16 19 C -0.39 -11.35 9.49 30.89 0.29 -11.06 16 20 H 0.09 2.46 5.21 -52.48 -0.27 2.18 16 21 C 0.04 1.16 5.49 -17.52 -0.10 1.07 16 22 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 23 Si 0.94 21.12 29.55 -169.99 -5.02 16.10 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 C -0.24 -5.61 8.29 -39.25 -0.33 -5.94 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.80 7.58 -51.93 -0.39 0.40 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.40 1.39 8.60 -40.82 -0.35 1.04 16 36 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16 39 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 40 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 43 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.13 3.19 5.64 -52.49 -0.30 2.90 16 LS Contribution 395.55 15.07 5.96 5.96 Total: -1.00 -37.27 395.55 -7.32 -44.59 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.78 Total: 3.52 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -1.53 Total: -11.41 kcal Atomic # 7 Polarization: -30.46 SS G_CDS: 0.49 Total: -29.97 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.44 Total: -28.78 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.27 -7.32 -44.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842426610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.814 kcal (2) G-P(sol) polarization free energy of solvation -37.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds