Wall clock time and date at job start Tue Mar 31 2020 18:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46886 * 2 1 4 4 N 1.46502 * 109.47147 * 120.00058 * 2 1 3 5 5 C 1.34777 * 120.00026 * 155.00022 * 4 2 1 6 6 O 1.21285 * 119.99809 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99828 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47005 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47402 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47500 * 179.97438 * 9 8 7 11 11 O 1.20825 * 119.99771 * 0.02562 * 10 9 8 12 12 O 1.34264 * 120.00053 * 179.97438 * 10 9 8 13 13 C 1.35919 * 116.99931 * 185.33860 * 12 10 9 14 14 C 1.38818 * 120.02186 * 246.47271 * 13 12 10 15 15 C 1.38189 * 120.08648 * 179.74469 * 14 13 12 16 16 C 1.38158 * 120.12033 * 0.50567 * 15 14 13 17 17 C 1.38897 * 120.04038 * 359.76856 * 16 15 14 18 18 O 1.35750 * 120.04541 * 179.97438 * 17 16 15 19 19 C 1.34826 * 117.00491 * 185.96880 * 18 17 16 20 20 H 1.08006 * 119.99551 * 354.89514 * 19 18 17 21 21 C 1.38652 * 120.00306 * 174.90371 * 19 18 17 22 22 N 1.31551 * 119.99796 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99887 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47353 * 90.00066 * 23 21 19 25 25 H 1.48500 * 109.46582 * 209.99500 * 23 21 19 26 26 H 1.48499 * 109.47032 * 329.99253 * 23 21 19 27 27 C 1.38572 * 120.02216 * 66.74099 * 13 12 10 28 28 H 1.09003 * 109.46905 * 299.99746 * 1 2 3 29 29 H 1.08996 * 109.47064 * 59.99674 * 1 2 3 30 30 H 1.08994 * 109.46966 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47016 * 239.99787 * 2 1 3 32 32 H 1.09003 * 109.47141 * 60.00399 * 3 2 1 33 33 H 1.09003 * 109.46385 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47019 * 299.99933 * 3 2 1 35 35 H 0.96999 * 119.99906 * 334.99672 * 4 2 1 36 36 H 1.08997 * 109.47482 * 60.00120 * 7 5 4 37 37 H 1.09003 * 109.47528 * 300.00108 * 7 5 4 38 38 H 1.08996 * 109.47703 * 60.00108 * 8 7 5 39 39 H 1.08999 * 109.46955 * 299.99763 * 8 7 5 40 40 H 1.09001 * 109.47256 * 59.99179 * 9 8 7 41 41 H 1.09003 * 109.47111 * 299.99845 * 9 8 7 42 42 H 1.08007 * 119.96006 * 359.97438 * 14 13 12 43 43 H 1.07995 * 119.94824 * 180.23004 * 15 14 13 44 44 H 1.08000 * 119.98500 * 179.75135 * 16 15 14 45 45 H 0.97009 * 119.99879 * 180.02562 * 22 21 19 46 46 H 1.07999 * 120.05913 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2403 -1.2592 1.1944 6 8 3.9355 -1.1995 0.2023 7 6 3.7429 -1.9691 2.4250 8 6 5.1456 -2.5191 2.1594 9 6 5.6557 -3.2404 3.4086 10 6 7.0371 -3.7827 3.1468 11 8 7.5603 -3.6096 2.0715 12 8 7.6869 -4.4573 4.1087 13 6 8.9699 -4.8222 3.8474 14 6 9.2980 -6.1651 3.7208 15 6 10.6009 -6.5374 3.4499 16 6 11.5830 -5.5751 3.3145 17 6 11.2615 -4.2302 3.4459 18 8 12.2265 -3.2847 3.3134 19 6 11.8742 -2.0097 3.5742 20 1 10.8445 -1.7679 3.7927 21 6 12.8337 -1.0088 3.5617 22 7 14.0879 -1.3034 3.2959 23 14 12.3452 0.7578 3.9223 24 1 12.4548 1.0138 5.3809 25 1 13.2483 1.6805 3.1886 26 1 10.9445 0.9834 3.4839 27 6 9.9523 -3.8543 3.7127 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.4622 -0.7387 1.9895 36 1 3.0704 -2.7910 2.6704 37 1 3.7797 -1.2684 3.2592 38 1 5.8180 -1.6970 1.9143 39 1 5.1092 -3.2197 1.3252 40 1 4.9832 -4.0626 3.6534 41 1 5.6920 -2.5401 4.2431 42 1 8.5332 -6.9199 3.8304 43 1 10.8529 -7.5826 3.3481 44 1 12.6013 -5.8687 3.1068 45 1 14.7593 -0.6032 3.2876 46 1 9.6996 -2.8092 3.8148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842426610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:09 Heat of formation + Delta-G solvation = -158.092345 kcal Electronic energy + Delta-G solvation = -27700.437894 eV Core-core repulsion = 23554.836010 eV Total energy + Delta-G solvation = -4145.601884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.37560 -40.89798 -40.57462 -38.78492 -37.39904 -37.07645 -35.40015 -34.36911 -32.66189 -31.49855 -30.73628 -29.57209 -28.11912 -27.48812 -25.40977 -23.65941 -23.24740 -22.10450 -21.57381 -21.28389 -20.15026 -19.54517 -18.58921 -18.02374 -17.72137 -17.41323 -16.99864 -16.89095 -16.73503 -16.12431 -16.04384 -15.64152 -15.36079 -15.23065 -14.90405 -14.77877 -14.54002 -14.32008 -13.90557 -13.74362 -13.57858 -13.27204 -13.09346 -13.05565 -12.93769 -12.85939 -12.75123 -12.59185 -12.46325 -12.30994 -12.21837 -11.98461 -11.93435 -11.81313 -11.76642 -11.46202 -10.88822 -10.86529 -10.10810 -9.79754 -9.17239 -8.55620 -6.25046 0.13778 0.53255 1.09926 1.27819 1.37377 1.45619 1.67639 1.71464 2.10985 2.28464 2.71505 3.03389 3.35428 3.53016 3.72923 3.91711 3.96281 3.97290 3.99185 4.12923 4.16835 4.30003 4.30821 4.42428 4.51430 4.55309 4.56500 4.69329 4.72422 4.75750 4.84407 4.92099 4.94133 4.99051 5.03904 5.07117 5.24696 5.28523 5.30522 5.34489 5.43622 5.50741 5.55255 5.58641 5.91506 6.00016 6.61659 6.75502 6.87975 7.33806 7.63478 8.66806 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010400 B = 0.002467 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.680766 B =11348.057024 C =13530.857223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.129 3.871 3 C -0.161 4.161 4 N -0.714 5.714 5 C 0.502 3.498 6 O -0.596 6.596 7 C -0.126 4.126 8 C -0.096 4.096 9 C -0.094 4.094 10 C 0.444 3.556 11 O -0.532 6.532 12 O -0.291 6.291 13 C 0.114 3.886 14 C -0.191 4.191 15 C -0.047 4.047 16 C -0.198 4.198 17 C 0.126 3.874 18 O -0.222 6.222 19 C -0.418 4.418 20 H 0.090 0.910 21 C -0.017 4.017 22 N -0.913 5.913 23 Si 1.016 2.984 24 H -0.254 1.254 25 H -0.265 1.265 26 H -0.262 1.262 27 C -0.254 4.254 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.419 0.581 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.154 0.846 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.177 0.823 44 H 0.130 0.870 45 H 0.276 0.724 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.777 -1.065 2.905 31.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.220 4.220 4 N -0.368 5.368 5 C 0.290 3.710 6 O -0.477 6.477 7 C -0.166 4.166 8 C -0.134 4.134 9 C -0.131 4.131 10 C 0.289 3.711 11 O -0.419 6.419 12 O -0.206 6.206 13 C 0.073 3.927 14 C -0.210 4.210 15 C -0.065 4.065 16 C -0.217 4.217 17 C 0.075 3.925 18 O -0.128 6.128 19 C -0.494 4.494 20 H 0.107 0.893 21 C -0.215 4.215 22 N -0.550 5.550 23 Si 0.834 3.166 24 H -0.179 1.179 25 H -0.189 1.189 26 H -0.187 1.187 27 C -0.274 4.274 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.257 0.743 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.178 0.822 43 H 0.194 0.806 44 H 0.148 0.852 45 H 0.085 0.915 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -30.707 -0.887 1.771 30.771 hybrid contribution 0.573 1.073 -0.115 1.222 sum -30.134 0.186 1.656 30.180 Atomic orbital electron populations 1.22004 0.91322 1.03266 1.04151 1.20977 0.95959 0.92487 0.88159 1.22164 1.00109 0.96328 1.03369 1.46045 1.17328 1.55947 1.17453 1.21381 0.81347 0.78143 0.90105 1.90749 1.57704 1.61545 1.37659 1.21656 0.96167 1.02929 0.95807 1.21088 0.96301 0.99709 0.96305 1.21606 0.86446 1.03699 1.01306 1.25408 0.90153 0.74168 0.81354 1.90757 1.69373 1.54631 1.27121 1.84535 1.23801 1.67698 1.44580 1.18460 0.81152 0.93283 0.99792 1.21057 0.98687 0.93258 1.07974 1.21096 0.90558 1.00066 0.94753 1.20708 1.01699 0.89251 1.10080 1.19735 0.88091 0.90916 0.93759 1.83948 1.34838 1.16443 1.77555 1.21675 0.96133 0.80979 1.50628 0.89294 1.26556 0.94413 1.04671 0.95888 1.70158 1.02151 1.35858 1.46824 0.84647 0.78623 0.73826 0.79470 1.17876 1.18907 1.18653 1.21174 0.93720 0.99615 1.12888 0.90270 0.90332 0.91551 0.92458 0.90847 0.95335 0.90664 0.74341 0.84290 0.85149 0.94006 0.92773 0.82792 0.84188 0.82221 0.80590 0.85216 0.91502 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.38 71.98 0.68 -0.21 16 2 C 0.13 1.70 3.18 44.99 0.14 1.85 16 3 C -0.16 -2.27 9.48 71.98 0.68 -1.59 16 4 N -0.71 -8.25 5.08 -442.52 -2.25 -10.50 16 5 C 0.50 9.56 7.79 87.66 0.68 10.25 16 6 O -0.60 -19.06 15.64 -3.04 -0.05 -19.10 16 7 C -0.13 -1.38 5.70 29.85 0.17 -1.21 16 8 C -0.10 -2.04 3.79 30.59 0.12 -1.92 16 9 C -0.09 -1.61 5.81 29.85 0.17 -1.43 16 10 C 0.44 14.33 7.72 71.24 0.55 14.88 16 11 O -0.53 -23.06 15.30 21.96 0.34 -22.72 16 12 O -0.29 -9.93 10.04 4.59 0.05 -9.89 16 13 C 0.11 4.68 5.34 22.49 0.12 4.80 16 14 C -0.19 -6.51 9.98 22.40 0.22 -6.28 16 15 C -0.05 -1.58 10.03 22.24 0.22 -1.36 16 16 C -0.20 -8.63 9.99 22.41 0.22 -8.40 16 17 C 0.13 6.73 6.64 22.56 0.15 6.88 16 18 O -0.22 -14.02 9.76 -22.70 -0.22 -14.25 16 19 C -0.42 -25.94 9.49 67.92 0.64 -25.30 16 20 H 0.09 5.28 5.21 -2.91 -0.02 5.26 16 21 C -0.02 -1.00 5.49 84.83 0.47 -0.53 16 22 N -0.91 -57.34 13.67 21.61 0.30 -57.05 16 23 Si 1.02 45.03 29.55 68.60 2.03 47.06 16 24 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 27 C -0.25 -12.64 8.29 22.49 0.19 -12.46 16 28 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 1.12 7.58 -2.39 -0.02 1.10 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.42 1.42 8.60 -92.71 -0.80 0.63 16 36 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.04 1.22 8.06 -2.39 -0.02 1.20 16 39 H 0.05 1.44 8.06 -2.39 -0.02 1.42 16 40 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.16 4.09 8.06 -2.91 -0.02 4.06 16 43 H 0.18 4.06 8.06 -2.91 -0.02 4.04 16 44 H 0.13 5.35 8.06 -2.91 -0.02 5.33 16 45 H 0.28 15.76 8.31 -92.70 -0.77 14.99 16 46 H 0.11 5.72 5.64 -2.91 -0.02 5.70 16 Total: -1.00 -94.31 395.55 5.82 -88.49 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.20 Total: 20.00 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: 5.43 Total: -22.05 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -1.95 Total: -67.54 kcal Atomic # 8 Polarization: -66.07 SS G_CDS: 0.11 Total: -65.96 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -94.31 5.82 -88.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842426610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.600 kcal (2) G-P(sol) polarization free energy of solvation -94.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds