Wall clock time and date at job start Tue Mar 31 2020 18:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47333 * 2 1 4 4 N 1.46502 * 109.47172 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00026 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99809 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.99828 * 179.97438 * 5 4 3 8 8 C 1.52998 * 109.47005 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47402 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47500 * 179.97438 * 9 8 7 11 11 O 1.20825 * 119.99771 * 0.02562 * 10 9 8 12 12 O 1.34264 * 120.00053 * 179.97438 * 10 9 8 13 13 C 1.35919 * 116.99931 * 185.33860 * 12 10 9 14 14 C 1.38818 * 120.02186 * 246.47271 * 13 12 10 15 15 C 1.38189 * 120.08648 * 179.74469 * 14 13 12 16 16 C 1.38158 * 120.12033 * 0.50567 * 15 14 13 17 17 C 1.38897 * 120.04038 * 359.76856 * 16 15 14 18 18 O 1.35750 * 120.04541 * 179.97438 * 17 16 15 19 19 C 1.34826 * 117.00491 * 185.96880 * 18 17 16 20 20 H 1.08006 * 119.99551 * 354.89514 * 19 18 17 21 21 C 1.38652 * 120.00306 * 174.90371 * 19 18 17 22 22 N 1.31551 * 119.99796 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99887 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47353 * 90.00066 * 23 21 19 25 25 H 1.48500 * 109.46582 * 209.99500 * 23 21 19 26 26 H 1.48499 * 109.47032 * 329.99253 * 23 21 19 27 27 C 1.38572 * 120.02216 * 66.74099 * 13 12 10 28 28 H 1.08999 * 109.46994 * 59.99740 * 1 2 3 29 29 H 1.08995 * 109.47136 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46785 * 299.99892 * 1 2 3 31 31 H 1.09009 * 109.46785 * 240.00108 * 2 1 3 32 32 H 1.09003 * 109.47452 * 120.00426 * 2 1 3 33 33 H 1.09000 * 109.46735 * 60.00750 * 3 2 1 34 34 H 1.08999 * 109.47292 * 300.00077 * 3 2 1 35 35 H 0.96999 * 119.99906 * 359.97438 * 4 3 2 36 36 H 1.08997 * 109.47482 * 60.00120 * 7 5 4 37 37 H 1.09003 * 109.47528 * 300.00108 * 7 5 4 38 38 H 1.08996 * 109.47703 * 60.00108 * 8 7 5 39 39 H 1.08999 * 109.46955 * 299.99763 * 8 7 5 40 40 H 1.09001 * 109.47256 * 59.99179 * 9 8 7 41 41 H 1.09003 * 109.47111 * 299.99845 * 9 8 7 42 42 H 1.08007 * 119.96006 * 359.97438 * 14 13 12 43 43 H 1.07995 * 119.94824 * 180.23004 * 15 14 13 44 44 H 1.08000 * 119.98500 * 179.75135 * 16 15 14 45 45 H 0.97009 * 119.99879 * 180.02562 * 22 21 19 46 46 H 1.07999 * 120.05913 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1790 2.6096 -0.0002 6 8 3.5726 3.6600 0.0002 7 6 5.6859 2.6095 -0.0003 8 6 6.1960 4.0520 0.0009 9 6 7.7260 4.0520 0.0002 10 6 8.2284 5.4728 0.0007 11 8 7.4433 6.3912 0.0020 12 8 9.5485 5.7181 0.0008 13 6 9.9349 7.0162 0.1139 14 6 10.5735 7.6457 -0.9458 15 6 10.9622 8.9671 -0.8341 16 6 10.7259 9.6628 0.3359 17 6 10.0924 9.0363 1.4015 18 8 9.8607 9.7196 2.5514 19 6 9.3556 9.0205 3.5877 20 1 9.0766 7.9855 3.4561 21 6 9.1939 9.6304 4.8224 22 7 9.5340 10.8911 4.9828 23 14 8.4933 8.6620 6.2579 24 1 9.6004 8.0103 7.0028 25 1 7.7607 9.5818 7.1649 26 1 7.5618 7.6243 5.7474 27 6 9.6966 7.7106 1.2892 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9562 0.8901 34 1 1.6767 1.9563 -0.8900 35 1 3.9900 0.6024 -0.0006 36 1 6.0493 2.0960 -0.8904 37 1 6.0494 2.0953 0.8895 38 1 5.8328 4.5652 0.8913 39 1 5.8327 4.5665 -0.8887 40 1 8.0890 3.5389 -0.8904 41 1 8.0898 3.5373 0.8896 42 1 10.7635 7.1031 -1.8602 43 1 11.4555 9.4557 -1.6613 44 1 11.0342 10.6942 0.4223 45 1 9.4212 11.3177 5.8467 46 1 9.2034 7.2214 2.1161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842427756.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:14 Heat of formation + Delta-G solvation = -135.541138 kcal Electronic energy + Delta-G solvation = -27397.410977 eV Core-core repulsion = 23252.786987 eV Total energy + Delta-G solvation = -4144.623990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.91052 -40.00714 -38.79224 -37.19945 -36.25656 -35.70406 -34.47653 -33.01761 -32.29049 -30.07785 -29.20984 -28.75116 -26.52957 -25.41620 -23.85124 -22.21609 -21.92158 -21.53041 -20.48357 -20.24267 -18.27890 -17.90339 -17.43727 -16.73051 -16.61356 -16.30587 -16.15912 -15.79953 -15.45497 -15.10390 -14.56015 -14.36636 -14.17856 -13.84870 -13.66150 -13.49308 -13.33407 -13.01743 -12.98228 -12.75253 -12.59413 -12.30603 -12.22007 -11.85077 -11.70618 -11.63760 -11.53022 -11.39740 -11.25552 -11.02648 -11.00118 -10.83475 -10.48880 -10.38948 -10.24296 -10.06937 -9.50967 -9.43164 -8.85667 -8.11661 -7.33055 -6.46524 -4.05714 1.78599 2.23417 2.39284 2.43423 2.76599 3.11266 3.14052 3.18255 3.19593 3.96326 4.29214 4.39022 4.45232 4.47299 4.65646 4.71987 4.72893 4.82004 5.05910 5.08159 5.12781 5.13714 5.17913 5.22657 5.25587 5.33066 5.39851 5.51720 5.60624 5.62007 5.70705 5.80146 5.89076 6.02433 6.05133 6.17542 6.20345 6.33689 6.58696 6.92387 7.03423 7.10985 7.13565 7.15919 7.34947 7.62400 7.94929 7.97141 8.19460 8.98586 9.65070 10.70977 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.002275 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.144621 B =12305.166371 C =14422.955955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.116 3.884 4 N -0.737 5.737 5 C 0.510 3.490 6 O -0.531 6.531 7 C -0.139 4.139 8 C -0.098 4.098 9 C -0.109 4.109 10 C 0.449 3.551 11 O -0.478 6.478 12 O -0.298 6.298 13 C 0.123 3.877 14 C -0.212 4.212 15 C -0.064 4.064 16 C -0.189 4.189 17 C 0.165 3.835 18 O -0.171 6.171 19 C -0.392 4.392 20 H 0.090 0.910 21 C 0.041 3.959 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.267 1.267 27 C -0.235 4.235 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.271 0.729 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.011 -24.288 -10.689 28.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.390 5.390 5 C 0.296 3.704 6 O -0.406 6.406 7 C -0.179 4.179 8 C -0.136 4.136 9 C -0.147 4.147 10 C 0.291 3.709 11 O -0.362 6.362 12 O -0.214 6.214 13 C 0.082 3.918 14 C -0.231 4.231 15 C -0.083 4.083 16 C -0.208 4.208 17 C 0.111 3.889 18 O -0.074 6.074 19 C -0.468 4.468 20 H 0.108 0.892 21 C -0.164 4.164 22 N -0.494 5.494 23 Si 0.765 3.235 24 H -0.198 1.198 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.255 4.255 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.081 0.919 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.697 -22.773 -10.429 26.859 hybrid contribution -0.142 -0.956 0.777 1.240 sum -9.839 -23.729 -9.653 27.442 Atomic orbital electron populations 1.21686 0.94498 1.02196 1.02481 1.21736 0.97101 0.95808 1.02677 1.21411 0.79674 0.97108 1.02600 1.46057 1.07386 1.08790 1.76801 1.20757 0.90401 0.83496 0.75733 1.90772 1.70467 1.31215 1.48165 1.21652 0.91737 0.99760 1.04725 1.21193 0.91750 0.94788 1.05854 1.21364 0.96876 0.90535 1.05883 1.23953 0.80638 0.92872 0.73395 1.90761 1.55882 1.46726 1.42817 1.84497 1.26078 1.27830 1.82988 1.18236 0.98356 0.81274 0.93934 1.20423 1.09496 0.95419 0.97785 1.20485 0.98257 0.93039 0.96473 1.20325 1.06282 1.01063 0.93140 1.19115 0.91887 0.89577 0.88351 1.83992 1.70830 1.35590 1.16951 1.21304 1.41965 0.96299 0.87213 0.89233 1.25287 0.97012 0.96222 0.97842 1.70036 1.44010 1.10498 1.24861 0.85711 0.78983 0.78943 0.79849 1.19771 1.20101 1.19133 1.21187 1.09665 0.96064 0.98588 0.92296 0.92146 0.92254 0.91326 0.91289 0.91442 0.91488 0.76608 0.88509 0.88435 0.89820 0.89987 0.87608 0.87471 0.86716 0.85980 0.85894 0.91923 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.91 37.16 0.37 -0.26 16 2 C -0.14 -0.57 6.05 -26.73 -0.16 -0.73 16 3 C 0.12 0.80 5.67 -4.04 -0.02 0.78 16 4 N -0.74 -4.97 5.56 -60.29 -0.33 -5.31 16 5 C 0.51 5.12 7.83 -10.99 -0.09 5.03 16 6 O -0.53 -8.13 15.98 5.55 0.09 -8.04 16 7 C -0.14 -0.98 5.70 -27.89 -0.16 -1.14 16 8 C -0.10 -1.08 3.79 -26.73 -0.10 -1.18 16 9 C -0.11 -1.11 5.81 -27.88 -0.16 -1.27 16 10 C 0.45 7.46 7.72 36.01 0.28 7.74 16 11 O -0.48 -10.01 15.30 -18.75 -0.29 -10.30 16 12 O -0.30 -5.37 10.04 -23.60 -0.24 -5.60 16 13 C 0.12 2.56 5.34 -39.24 -0.21 2.35 16 14 C -0.21 -3.99 9.98 -39.38 -0.39 -4.38 16 15 C -0.06 -1.18 10.03 -39.63 -0.40 -1.58 16 16 C -0.19 -4.10 9.99 -39.37 -0.39 -4.49 16 17 C 0.17 4.19 6.64 -39.13 -0.26 3.93 16 18 O -0.17 -5.02 9.76 0.06 0.00 -5.02 16 19 C -0.39 -11.35 9.49 30.89 0.29 -11.06 16 20 H 0.09 2.46 5.21 -52.48 -0.27 2.18 16 21 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 22 N -0.86 -25.57 13.67 55.48 0.76 -24.81 16 23 Si 0.94 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 C -0.24 -5.61 8.29 -39.25 -0.33 -5.94 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.07 0.24 8.14 -51.92 -0.42 -0.19 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.40 1.37 8.47 -40.82 -0.35 1.02 16 36 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 39 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 40 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 43 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.13 3.19 5.64 -52.49 -0.30 2.90 16 LS Contribution 396.42 15.07 5.97 5.97 Total: -1.00 -37.52 396.42 -7.70 -45.21 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.81 Total: 2.92 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -1.83 Total: -11.12 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 0.42 Total: -30.12 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.43 Total: -28.97 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.52 -7.70 -45.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842427756.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.330 kcal (2) G-P(sol) polarization free energy of solvation -37.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds