Wall clock time and date at job start Tue Mar 31 2020 18:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47333 * 2 1 4 4 N 1.46502 * 109.47172 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00026 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99809 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.99828 * 179.97438 * 5 4 3 8 8 C 1.52998 * 109.47005 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47402 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47500 * 179.97438 * 9 8 7 11 11 O 1.20825 * 119.99771 * 0.02562 * 10 9 8 12 12 O 1.34264 * 120.00053 * 179.97438 * 10 9 8 13 13 C 1.35919 * 116.99931 * 185.33860 * 12 10 9 14 14 C 1.38818 * 120.02186 * 246.47271 * 13 12 10 15 15 C 1.38189 * 120.08648 * 179.74469 * 14 13 12 16 16 C 1.38158 * 120.12033 * 0.50567 * 15 14 13 17 17 C 1.38897 * 120.04038 * 359.76856 * 16 15 14 18 18 O 1.35750 * 120.04541 * 179.97438 * 17 16 15 19 19 C 1.34826 * 117.00491 * 185.96880 * 18 17 16 20 20 H 1.08006 * 119.99551 * 354.89514 * 19 18 17 21 21 C 1.38652 * 120.00306 * 174.90371 * 19 18 17 22 22 N 1.31551 * 119.99796 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99887 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47353 * 90.00066 * 23 21 19 25 25 H 1.48500 * 109.46582 * 209.99500 * 23 21 19 26 26 H 1.48499 * 109.47032 * 329.99253 * 23 21 19 27 27 C 1.38572 * 120.02216 * 66.74099 * 13 12 10 28 28 H 1.08999 * 109.46994 * 59.99740 * 1 2 3 29 29 H 1.08995 * 109.47136 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46785 * 299.99892 * 1 2 3 31 31 H 1.09009 * 109.46785 * 240.00108 * 2 1 3 32 32 H 1.09003 * 109.47452 * 120.00426 * 2 1 3 33 33 H 1.09000 * 109.46735 * 60.00750 * 3 2 1 34 34 H 1.08999 * 109.47292 * 300.00077 * 3 2 1 35 35 H 0.96999 * 119.99906 * 359.97438 * 4 3 2 36 36 H 1.08997 * 109.47482 * 60.00120 * 7 5 4 37 37 H 1.09003 * 109.47528 * 300.00108 * 7 5 4 38 38 H 1.08996 * 109.47703 * 60.00108 * 8 7 5 39 39 H 1.08999 * 109.46955 * 299.99763 * 8 7 5 40 40 H 1.09001 * 109.47256 * 59.99179 * 9 8 7 41 41 H 1.09003 * 109.47111 * 299.99845 * 9 8 7 42 42 H 1.08007 * 119.96006 * 359.97438 * 14 13 12 43 43 H 1.07995 * 119.94824 * 180.23004 * 15 14 13 44 44 H 1.08000 * 119.98500 * 179.75135 * 16 15 14 45 45 H 0.97009 * 119.99879 * 180.02562 * 22 21 19 46 46 H 1.07999 * 120.05913 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1790 2.6096 -0.0002 6 8 3.5726 3.6600 0.0002 7 6 5.6859 2.6095 -0.0003 8 6 6.1960 4.0520 0.0009 9 6 7.7260 4.0520 0.0002 10 6 8.2284 5.4728 0.0007 11 8 7.4433 6.3912 0.0020 12 8 9.5485 5.7181 0.0008 13 6 9.9349 7.0162 0.1139 14 6 10.5735 7.6457 -0.9458 15 6 10.9622 8.9671 -0.8341 16 6 10.7259 9.6628 0.3359 17 6 10.0924 9.0363 1.4015 18 8 9.8607 9.7196 2.5514 19 6 9.3556 9.0205 3.5877 20 1 9.0766 7.9855 3.4561 21 6 9.1939 9.6304 4.8224 22 7 9.5340 10.8911 4.9828 23 14 8.4933 8.6620 6.2579 24 1 9.6004 8.0103 7.0028 25 1 7.7607 9.5818 7.1649 26 1 7.5618 7.6243 5.7474 27 6 9.6966 7.7106 1.2892 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9562 0.8901 34 1 1.6767 1.9563 -0.8900 35 1 3.9900 0.6024 -0.0006 36 1 6.0493 2.0960 -0.8904 37 1 6.0494 2.0953 0.8895 38 1 5.8328 4.5652 0.8913 39 1 5.8327 4.5665 -0.8887 40 1 8.0890 3.5389 -0.8904 41 1 8.0898 3.5373 0.8896 42 1 10.7635 7.1031 -1.8602 43 1 11.4555 9.4557 -1.6613 44 1 11.0342 10.6942 0.4223 45 1 9.4212 11.3177 5.8467 46 1 9.2034 7.2214 2.1161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842427756.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:13 Heat of formation + Delta-G solvation = -161.438426 kcal Electronic energy + Delta-G solvation = -27398.533967 eV Core-core repulsion = 23252.786987 eV Total energy + Delta-G solvation = -4145.746981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.37276 -40.82784 -40.56161 -38.77742 -37.38813 -36.87156 -35.41085 -34.36649 -33.56890 -31.55618 -30.76584 -29.95345 -27.53994 -27.10309 -25.04142 -23.51153 -23.06158 -22.55749 -21.63946 -21.15304 -20.14855 -19.54105 -18.57165 -17.96774 -17.71814 -17.32549 -17.02155 -16.95593 -16.88172 -16.36305 -16.08487 -15.84310 -15.63925 -15.22209 -14.95669 -14.79134 -14.52128 -14.33705 -13.84193 -13.76827 -13.53331 -13.45246 -13.22316 -13.02182 -12.86332 -12.83754 -12.74757 -12.58904 -12.46148 -12.21567 -12.05016 -11.98189 -11.81259 -11.76948 -11.76422 -11.46051 -10.93174 -10.87360 -10.11976 -9.79526 -9.17058 -8.55336 -6.24790 0.14016 0.53457 1.10272 1.28067 1.37648 1.45911 1.64923 1.71530 2.11216 2.26866 2.71711 3.03594 3.35615 3.53115 3.74103 3.91446 3.94918 3.96612 3.99289 4.05823 4.16716 4.30080 4.32922 4.42087 4.51426 4.54888 4.56768 4.63899 4.70686 4.76544 4.83575 4.88722 4.94700 4.99363 5.07170 5.13167 5.22742 5.27342 5.33692 5.35214 5.43809 5.49606 5.51004 5.55699 5.91715 6.00226 6.57704 6.75797 6.88187 7.29800 7.63695 8.67018 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.002275 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.144621 B =12305.166371 C =14422.955955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.113 3.887 4 N -0.718 5.718 5 C 0.500 3.500 6 O -0.598 6.598 7 C -0.125 4.125 8 C -0.096 4.096 9 C -0.094 4.094 10 C 0.443 3.557 11 O -0.532 6.532 12 O -0.291 6.291 13 C 0.115 3.885 14 C -0.191 4.191 15 C -0.047 4.047 16 C -0.198 4.198 17 C 0.126 3.874 18 O -0.222 6.222 19 C -0.418 4.418 20 H 0.090 0.910 21 C -0.018 4.018 22 N -0.912 5.912 23 Si 1.016 2.984 24 H -0.255 1.255 25 H -0.265 1.265 26 H -0.262 1.262 27 C -0.254 4.254 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.420 0.580 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.042 0.958 39 H 0.053 0.947 40 H 0.155 0.845 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.177 0.823 44 H 0.130 0.870 45 H 0.276 0.724 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.863 -28.636 -12.711 32.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.011 4.011 4 N -0.372 5.372 5 C 0.289 3.711 6 O -0.478 6.478 7 C -0.165 4.165 8 C -0.135 4.135 9 C -0.131 4.131 10 C 0.289 3.711 11 O -0.419 6.419 12 O -0.206 6.206 13 C 0.073 3.927 14 C -0.210 4.210 15 C -0.065 4.065 16 C -0.218 4.218 17 C 0.075 3.925 18 O -0.128 6.128 19 C -0.494 4.494 20 H 0.107 0.893 21 C -0.216 4.216 22 N -0.550 5.550 23 Si 0.835 3.165 24 H -0.179 1.179 25 H -0.189 1.189 26 H -0.186 1.186 27 C -0.274 4.274 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.258 0.742 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.172 0.828 41 H 0.159 0.841 42 H 0.178 0.822 43 H 0.194 0.806 44 H 0.148 0.852 45 H 0.085 0.915 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.515 -27.220 -12.504 31.141 hybrid contribution -0.469 0.278 1.062 1.194 sum -8.983 -26.942 -11.442 30.618 Atomic orbital electron populations 1.21717 0.94637 1.02815 1.01970 1.21674 0.96888 0.93674 1.03933 1.21425 0.79922 0.98878 1.00911 1.45933 1.07364 1.08934 1.74946 1.21426 0.91887 0.83207 0.74621 1.90755 1.71933 1.33682 1.51471 1.21652 0.89128 0.97289 1.08383 1.21096 0.92635 0.97139 1.02618 1.21606 0.95562 0.86262 1.09622 1.25411 0.79400 0.95041 0.71234 1.90758 1.56784 1.48940 1.45410 1.84535 1.27179 1.25961 1.82937 1.18457 0.98277 0.82508 0.93421 1.21058 1.06157 0.95572 0.98206 1.21094 0.96325 0.92808 0.96238 1.20708 1.05845 1.01796 0.93406 1.19732 0.93611 0.90716 0.88425 1.83948 1.73461 1.37060 1.18372 1.21674 1.42938 0.96666 0.88105 0.89269 1.26565 0.97103 0.97411 1.00521 1.70160 1.46390 1.12465 1.25950 0.84641 0.78633 0.77502 0.75748 1.17896 1.18933 1.18624 1.21171 1.10510 0.96067 0.99618 0.92749 0.90889 0.92959 0.89833 0.90100 0.93459 0.93099 0.74180 0.84208 0.84991 0.93950 0.92776 0.82773 0.84131 0.82225 0.80601 0.85229 0.91517 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 71.98 0.71 -0.40 16 2 C -0.12 -0.80 6.05 30.59 0.19 -0.62 16 3 C 0.11 1.53 5.67 86.38 0.49 2.02 16 4 N -0.72 -8.37 5.56 -463.06 -2.57 -10.94 16 5 C 0.50 9.58 7.83 87.66 0.69 10.26 16 6 O -0.60 -19.30 15.98 -3.04 -0.05 -19.35 16 7 C -0.13 -1.34 5.70 29.85 0.17 -1.17 16 8 C -0.10 -2.04 3.79 30.59 0.12 -1.92 16 9 C -0.09 -1.59 5.81 29.85 0.17 -1.41 16 10 C 0.44 14.26 7.72 71.24 0.55 14.81 16 11 O -0.53 -23.00 15.30 21.96 0.34 -22.67 16 12 O -0.29 -9.90 10.04 4.59 0.05 -9.85 16 13 C 0.11 4.67 5.34 22.49 0.12 4.79 16 14 C -0.19 -6.50 9.98 22.40 0.22 -6.28 16 15 C -0.05 -1.57 10.03 22.24 0.22 -1.35 16 16 C -0.20 -8.63 9.99 22.41 0.22 -8.40 16 17 C 0.13 6.73 6.64 22.56 0.15 6.88 16 18 O -0.22 -14.06 9.76 -22.70 -0.22 -14.28 16 19 C -0.42 -25.90 9.49 67.92 0.64 -25.25 16 20 H 0.09 5.28 5.21 -2.91 -0.02 5.27 16 21 C -0.02 -1.04 5.49 84.83 0.47 -0.58 16 22 N -0.91 -57.28 13.67 21.61 0.30 -56.99 16 23 Si 1.02 44.99 29.55 68.60 2.03 47.02 16 24 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 27 C -0.25 -12.60 8.29 22.49 0.19 -12.42 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.42 1.36 8.47 -92.71 -0.79 0.58 16 36 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.04 1.23 8.06 -2.39 -0.02 1.21 16 39 H 0.05 1.43 8.06 -2.39 -0.02 1.41 16 40 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.16 4.08 8.06 -2.91 -0.02 4.05 16 43 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 44 H 0.13 5.34 8.06 -2.91 -0.02 5.32 16 45 H 0.28 15.74 8.31 -92.70 -0.77 14.97 16 46 H 0.11 5.71 5.64 -2.91 -0.02 5.69 16 Total: -1.00 -94.38 396.42 5.39 -88.98 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.21 Total: 19.11 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 5.32 Total: -21.04 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -2.28 Total: -67.93 kcal Atomic # 8 Polarization: -66.26 SS G_CDS: 0.11 Total: -66.15 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -94.38 5.39 -88.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842427756.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.455 kcal (2) G-P(sol) polarization free energy of solvation -94.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds