Wall clock time and date at job start Tue Mar 31 2020 19:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99691 * 2 1 4 4 O 1.20816 * 120.00392 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99630 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.50986 * 55.08651 * 5 3 2 7 7 C 1.53097 * 109.51053 * 295.00055 * 5 3 2 8 8 N 1.47014 * 109.26330 * 183.17184 * 7 5 3 9 9 C 1.46896 * 111.00124 * 182.38960 * 8 7 5 10 10 C 1.50704 * 109.47021 * 66.37059 * 9 8 7 11 11 C 1.38303 * 119.92768 * 269.72526 * 10 9 8 12 12 C 1.38099 * 120.06736 * 179.72621 * 11 10 9 13 13 C 1.38875 * 119.92823 * 0.56648 * 12 11 10 14 14 O 1.35758 * 120.07016 * 179.68578 * 13 12 11 15 15 C 1.34827 * 117.00370 * 174.48825 * 14 13 12 16 16 H 1.08000 * 119.99744 * 5.05738 * 15 14 13 17 17 C 1.38647 * 120.00432 * 185.05859 * 15 14 13 18 18 N 1.31558 * 120.00606 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99621 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46854 * 90.00438 * 19 17 15 21 21 H 1.48506 * 109.47297 * 210.00127 * 19 17 15 22 22 H 1.48498 * 109.47462 * 330.00089 * 19 17 15 23 23 C 1.38880 * 119.86748 * 359.70229 * 13 12 11 24 24 C 1.38099 * 119.92764 * 0.02562 * 23 13 12 25 25 C 1.47020 * 110.74702 * 58.61501 * 8 7 5 26 26 C 1.53092 * 109.25887 * 301.38564 * 25 8 7 27 27 H 1.09004 * 109.51011 * 296.86942 * 26 25 8 28 28 C 1.53006 * 109.50694 * 176.78623 * 26 25 8 29 29 O 1.43009 * 109.26185 * 56.84826 * 26 25 8 30 30 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47062 * 299.99353 * 1 2 3 32 32 H 1.08995 * 109.47604 * 60.00184 * 1 2 3 33 33 H 1.09001 * 109.50593 * 63.23502 * 7 5 3 34 34 H 1.09000 * 109.53939 * 303.13179 * 7 5 3 35 35 H 1.09004 * 109.47109 * 186.36260 * 9 8 7 36 36 H 1.08999 * 109.47470 * 306.36870 * 9 8 7 37 37 H 1.07996 * 119.96627 * 359.97299 * 11 10 9 38 38 H 1.07995 * 120.03994 * 180.27302 * 12 11 10 39 39 H 0.97003 * 120.00188 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.04240 * 180.02562 * 23 13 12 41 41 H 1.08003 * 119.96703 * 179.97438 * 24 23 13 42 42 H 1.09004 * 109.50213 * 181.45318 * 25 8 7 43 43 H 1.09000 * 109.54228 * 61.34729 * 25 8 7 44 44 H 1.09007 * 109.46985 * 59.99816 * 28 26 25 45 45 H 1.08997 * 109.46813 * 179.97438 * 28 26 25 46 46 H 1.08994 * 109.47104 * 300.00088 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9609 0.7065 -0.8417 7 6 4.1083 0.6928 1.3088 8 7 5.5706 0.8415 1.3367 9 6 6.1375 0.2435 2.5527 10 6 5.9364 -1.2497 2.5189 11 6 4.7926 -1.8044 3.0636 12 6 4.6028 -3.1719 3.0292 13 6 5.5674 -3.9911 2.4573 14 8 5.3867 -5.3363 2.4275 15 6 6.3044 -6.0626 1.7580 16 1 7.1787 -5.5806 1.3461 17 6 6.1257 -7.4282 1.5984 18 7 7.0213 -8.1370 0.9456 19 14 4.6138 -8.2619 2.3115 20 1 3.5223 -8.2527 1.3046 21 1 4.9447 -9.6646 2.6699 22 1 4.1725 -7.5315 3.5267 23 6 6.7175 -3.4315 1.9160 24 6 6.8989 -2.0629 1.9486 25 6 5.9526 2.2563 1.2179 26 6 5.3921 2.8226 -0.0894 27 1 5.8404 2.2998 -0.9343 28 6 5.7178 4.3148 -0.1809 29 8 3.9738 2.6410 -0.1124 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.8486 -0.3639 1.3721 34 1 3.6720 1.2261 2.1534 35 1 7.2035 0.4654 2.6039 36 1 5.6377 0.6577 3.4284 37 1 4.0453 -1.1673 3.5129 38 1 3.7075 -3.6042 3.4507 39 1 6.8961 -9.0924 0.8336 40 1 7.4693 -4.0659 1.4702 41 1 7.7932 -1.6270 1.5282 42 1 7.0393 2.3408 1.2148 43 1 5.5464 2.8156 2.0606 44 1 6.7989 4.4527 -0.1594 45 1 5.3189 4.7172 -1.1120 46 1 5.2681 4.8372 0.6634 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844418609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:05 Heat of formation + Delta-G solvation = -115.424232 kcal Electronic energy + Delta-G solvation = -29165.149082 eV Core-core repulsion = 25021.397427 eV Total energy + Delta-G solvation = -4143.751655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.96149 -39.75593 -39.11167 -37.25615 -36.59560 -35.44876 -33.32764 -32.43654 -30.82227 -30.25422 -29.39861 -27.69264 -26.48003 -25.49311 -24.70795 -22.75190 -22.04317 -21.48479 -20.61656 -20.30493 -17.94246 -17.83436 -17.39841 -17.24114 -16.72441 -16.51621 -15.96491 -15.62984 -15.23214 -14.76544 -14.67183 -14.20161 -14.07432 -14.00138 -13.74596 -13.53101 -13.38285 -12.97093 -12.80131 -12.69001 -12.61370 -12.53921 -12.25924 -12.19170 -11.97377 -11.75981 -11.47681 -11.29705 -11.15589 -11.00678 -10.80140 -10.74810 -10.70510 -10.42723 -10.17594 -9.89441 -9.41154 -8.89817 -8.54274 -8.27892 -7.35922 -6.44169 -4.10811 1.91792 2.07422 2.11005 2.13671 3.20000 3.23891 3.38104 3.52465 3.77693 4.21346 4.40332 4.47155 4.56506 4.59208 4.78495 4.80904 4.84163 4.91102 4.97196 4.98387 5.07899 5.12614 5.21797 5.27805 5.31873 5.33604 5.40890 5.50398 5.59529 5.62616 5.69729 5.72943 5.77237 5.85608 6.10073 6.10680 6.29106 6.52316 6.66852 6.75641 6.79014 6.83935 7.02660 7.21259 7.29237 7.53476 7.57808 7.77506 8.00979 8.91053 9.53069 10.63383 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.002978 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.689739 B = 9399.494376 C =10790.708923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.349 6.349 3 C 0.471 3.529 4 O -0.489 6.489 5 C 0.107 3.893 6 H 0.108 0.892 7 C 0.031 3.969 8 N -0.528 5.528 9 C 0.114 3.886 10 C -0.176 4.176 11 C -0.071 4.071 12 C -0.191 4.191 13 C 0.163 3.837 14 O -0.217 6.217 15 C -0.389 4.389 16 H 0.107 0.893 17 C 0.064 3.936 18 N -0.879 5.879 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.260 1.260 23 C -0.222 4.222 24 C -0.049 4.049 25 C 0.019 3.981 26 C 0.091 3.909 27 H 0.073 0.927 28 C -0.143 4.143 29 O -0.362 6.362 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.280 0.720 40 H 0.133 0.867 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.483 20.444 -0.548 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.265 6.265 3 C 0.312 3.688 4 O -0.375 6.375 5 C 0.047 3.953 6 H 0.126 0.874 7 C -0.098 4.098 8 N -0.253 5.253 9 C -0.012 4.012 10 C -0.177 4.177 11 C -0.090 4.090 12 C -0.211 4.211 13 C 0.110 3.890 14 O -0.121 6.121 15 C -0.465 4.465 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.241 4.241 24 C -0.068 4.068 25 C -0.109 4.109 26 C 0.033 3.967 27 H 0.091 0.909 28 C -0.200 4.200 29 O -0.281 6.281 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.129 0.871 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.750 20.271 -0.941 21.092 hybrid contribution -0.815 -0.271 0.839 1.200 sum -6.564 20.000 -0.102 21.050 Atomic orbital electron populations 1.23331 0.75641 1.04167 1.02539 1.86533 1.23788 1.32295 1.83932 1.23084 0.90950 0.81804 0.73011 1.90672 1.66680 1.36330 1.43824 1.21363 0.87556 0.85562 1.00802 0.87446 1.22687 0.88854 1.03501 0.94741 1.62271 1.08770 1.14367 1.39904 1.20837 0.99525 0.91881 0.88974 1.19088 0.97462 0.93305 1.07864 1.20479 0.96212 0.93746 0.98547 1.20152 0.99966 0.92559 1.08383 1.19135 0.92923 0.83775 0.93145 1.83571 1.49260 1.13571 1.65744 1.20770 1.02152 0.90687 1.32878 0.87573 1.24466 0.98398 0.95223 0.95874 1.69645 1.34617 1.08057 1.39335 0.86188 0.81981 0.78251 0.80519 1.19851 1.20796 1.18371 1.21280 0.99870 0.95284 1.07661 1.20603 0.97515 0.92669 0.95983 1.22891 1.01678 0.88713 0.97643 1.22277 0.80065 0.97186 0.97131 0.90858 1.21740 1.01793 0.93141 1.03345 1.88015 1.22894 1.22689 1.94514 0.87546 0.91789 0.91790 0.87124 0.93718 0.90165 0.94505 0.87410 0.86597 0.91021 0.84954 0.87186 0.89130 0.93816 0.90525 0.91400 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.39 16 2 O -0.35 -4.24 10.56 -39.25 -0.41 -4.65 16 3 C 0.47 6.26 7.29 36.01 0.26 6.52 16 4 O -0.49 -7.67 16.26 -25.44 -0.41 -8.08 16 5 C 0.11 1.31 3.33 -27.83 -0.09 1.22 16 6 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 7 C 0.03 0.37 4.55 -3.71 -0.02 0.36 16 8 N -0.53 -6.23 4.72 -235.75 -1.11 -7.34 16 9 C 0.11 1.38 5.11 -4.98 -0.03 1.35 16 10 C -0.18 -2.69 4.89 -104.57 -0.51 -3.21 16 11 C -0.07 -1.13 7.93 -39.61 -0.31 -1.44 16 12 C -0.19 -3.62 9.99 -39.40 -0.39 -4.01 16 13 C 0.16 3.62 6.65 -39.11 -0.26 3.36 16 14 O -0.22 -5.59 8.59 0.03 0.00 -5.59 16 15 C -0.39 -10.77 9.95 30.88 0.31 -10.46 16 16 H 0.11 3.00 5.44 -52.49 -0.29 2.71 16 17 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -25.07 13.96 55.48 0.77 -24.29 16 19 Si 0.91 21.34 28.62 -169.99 -4.86 16.47 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 23 C -0.22 -4.59 9.17 -39.39 -0.36 -4.95 16 24 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 25 C 0.02 0.18 4.93 -3.71 -0.02 0.16 16 26 C 0.09 0.88 3.43 -26.68 -0.09 0.79 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 C -0.14 -1.06 9.57 37.16 0.36 -0.71 16 29 O -0.36 -4.59 9.65 -55.09 -0.53 -5.12 16 30 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 33 H 0.11 1.48 6.03 -51.93 -0.31 1.17 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.87 7.98 -51.93 -0.41 0.46 16 36 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 37 H 0.11 1.44 8.02 -52.49 -0.42 1.02 16 38 H 0.12 2.06 8.06 -52.49 -0.42 1.63 16 39 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 41 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 42 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 43 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -31.49 381.28 -8.17 -39.66 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.78 Total: 2.36 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -0.57 Total: -9.17 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: -0.34 Total: -31.63 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -1.36 Total: -23.44 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.86 Total: 16.47 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.49 -8.17 -39.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844418609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.767 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds