Wall clock time and date at job start Tue Mar 31 2020 19:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99691 * 2 1 4 4 O 1.20816 * 120.00392 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99630 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.50986 * 55.08651 * 5 3 2 7 7 C 1.53097 * 109.51053 * 295.00055 * 5 3 2 8 8 N 1.47014 * 109.26330 * 183.17184 * 7 5 3 9 9 C 1.46896 * 111.00124 * 182.38960 * 8 7 5 10 10 C 1.50704 * 109.47021 * 66.37059 * 9 8 7 11 11 C 1.38303 * 119.92768 * 269.72526 * 10 9 8 12 12 C 1.38099 * 120.06736 * 179.72621 * 11 10 9 13 13 C 1.38875 * 119.92823 * 0.56648 * 12 11 10 14 14 O 1.35758 * 120.07016 * 179.68578 * 13 12 11 15 15 C 1.34827 * 117.00370 * 174.48825 * 14 13 12 16 16 H 1.08000 * 119.99744 * 5.05738 * 15 14 13 17 17 C 1.38647 * 120.00432 * 185.05859 * 15 14 13 18 18 N 1.31558 * 120.00606 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99621 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46854 * 90.00438 * 19 17 15 21 21 H 1.48506 * 109.47297 * 210.00127 * 19 17 15 22 22 H 1.48498 * 109.47462 * 330.00089 * 19 17 15 23 23 C 1.38880 * 119.86748 * 359.70229 * 13 12 11 24 24 C 1.38099 * 119.92764 * 0.02562 * 23 13 12 25 25 C 1.47020 * 110.74702 * 58.61501 * 8 7 5 26 26 C 1.53092 * 109.25887 * 301.38564 * 25 8 7 27 27 H 1.09004 * 109.51011 * 296.86942 * 26 25 8 28 28 C 1.53006 * 109.50694 * 176.78623 * 26 25 8 29 29 O 1.43009 * 109.26185 * 56.84826 * 26 25 8 30 30 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47062 * 299.99353 * 1 2 3 32 32 H 1.08995 * 109.47604 * 60.00184 * 1 2 3 33 33 H 1.09001 * 109.50593 * 63.23502 * 7 5 3 34 34 H 1.09000 * 109.53939 * 303.13179 * 7 5 3 35 35 H 1.09004 * 109.47109 * 186.36260 * 9 8 7 36 36 H 1.08999 * 109.47470 * 306.36870 * 9 8 7 37 37 H 1.07996 * 119.96627 * 359.97299 * 11 10 9 38 38 H 1.07995 * 120.03994 * 180.27302 * 12 11 10 39 39 H 0.97003 * 120.00188 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.04240 * 180.02562 * 23 13 12 41 41 H 1.08003 * 119.96703 * 179.97438 * 24 23 13 42 42 H 1.09004 * 109.50213 * 181.45318 * 25 8 7 43 43 H 1.09000 * 109.54228 * 61.34729 * 25 8 7 44 44 H 1.09007 * 109.46985 * 59.99816 * 28 26 25 45 45 H 1.08997 * 109.46813 * 179.97438 * 28 26 25 46 46 H 1.08994 * 109.47104 * 300.00088 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9609 0.7065 -0.8417 7 6 4.1083 0.6928 1.3088 8 7 5.5706 0.8415 1.3367 9 6 6.1375 0.2435 2.5527 10 6 5.9364 -1.2497 2.5189 11 6 4.7926 -1.8044 3.0636 12 6 4.6028 -3.1719 3.0292 13 6 5.5674 -3.9911 2.4573 14 8 5.3867 -5.3363 2.4275 15 6 6.3044 -6.0626 1.7580 16 1 7.1787 -5.5806 1.3461 17 6 6.1257 -7.4282 1.5984 18 7 7.0213 -8.1370 0.9456 19 14 4.6138 -8.2619 2.3115 20 1 3.5223 -8.2527 1.3046 21 1 4.9447 -9.6646 2.6699 22 1 4.1725 -7.5315 3.5267 23 6 6.7175 -3.4315 1.9160 24 6 6.8989 -2.0629 1.9486 25 6 5.9526 2.2563 1.2179 26 6 5.3921 2.8226 -0.0894 27 1 5.8404 2.2998 -0.9343 28 6 5.7178 4.3148 -0.1809 29 8 3.9738 2.6410 -0.1124 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.8486 -0.3639 1.3721 34 1 3.6720 1.2261 2.1534 35 1 7.2035 0.4654 2.6039 36 1 5.6377 0.6577 3.4284 37 1 4.0453 -1.1673 3.5129 38 1 3.7075 -3.6042 3.4507 39 1 6.8961 -9.0924 0.8336 40 1 7.4693 -4.0659 1.4702 41 1 7.7932 -1.6270 1.5282 42 1 7.0393 2.3408 1.2148 43 1 5.5464 2.8156 2.0606 44 1 6.7989 4.4527 -0.1594 45 1 5.3189 4.7172 -1.1120 46 1 5.2681 4.8372 0.6634 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844418609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:04 Heat of formation + Delta-G solvation = -135.238414 kcal Electronic energy + Delta-G solvation = -29166.008290 eV Core-core repulsion = 25021.397427 eV Total energy + Delta-G solvation = -4144.610863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.92998 -40.98065 -40.41556 -38.67764 -37.63245 -36.57051 -34.43880 -34.11123 -32.08996 -31.70638 -30.38803 -28.51869 -27.78673 -26.77152 -25.95444 -23.88254 -23.47361 -22.39409 -21.69908 -21.47619 -19.78792 -19.05996 -18.81745 -18.29135 -17.67747 -17.36232 -16.88776 -16.73678 -16.56691 -16.04459 -15.87709 -15.67521 -15.47149 -15.37328 -14.93533 -14.83110 -14.34643 -14.26043 -14.17521 -14.05456 -13.76537 -13.48374 -13.21293 -13.06062 -12.99460 -12.83510 -12.75708 -12.47527 -12.40266 -12.33935 -12.16886 -11.93768 -11.89580 -11.73168 -11.40832 -11.23967 -10.88432 -10.76516 -9.75425 -9.45604 -8.95261 -8.47991 -6.20208 0.59807 0.64637 0.91850 1.24159 1.32893 1.36730 1.53142 2.29530 2.56269 2.80601 2.95207 3.13219 3.24981 3.52586 3.63665 3.78986 3.88912 3.97246 4.06967 4.17697 4.22311 4.23528 4.25978 4.29094 4.37776 4.46663 4.58625 4.61047 4.67315 4.68109 4.73954 4.75261 4.84355 4.89489 5.00718 5.06338 5.18025 5.28278 5.28869 5.40615 5.57958 5.74801 5.81705 5.89058 5.91404 5.95958 6.01763 6.27806 6.55941 6.86782 7.61849 8.63657 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.002978 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.689739 B = 9399.494376 C =10790.708923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.473 3.527 4 O -0.519 6.519 5 C 0.108 3.892 6 H 0.112 0.888 7 C 0.036 3.964 8 N -0.537 5.537 9 C 0.116 3.884 10 C -0.148 4.148 11 C -0.063 4.063 12 C -0.191 4.191 13 C 0.122 3.878 14 O -0.246 6.246 15 C -0.397 4.397 16 H 0.082 0.918 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.970 3.030 20 H -0.266 1.266 21 H -0.269 1.269 22 H -0.262 1.262 23 C -0.237 4.237 24 C -0.049 4.049 25 C 0.022 3.978 26 C 0.084 3.916 27 H 0.075 0.925 28 C -0.138 4.138 29 O -0.381 6.381 30 H 0.131 0.869 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.144 0.856 38 H 0.126 0.874 39 H 0.284 0.716 40 H 0.106 0.894 41 H 0.136 0.864 42 H 0.114 0.886 43 H 0.047 0.953 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.185 23.218 0.470 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.315 3.685 4 O -0.407 6.407 5 C 0.048 3.952 6 H 0.129 0.871 7 C -0.093 4.093 8 N -0.262 5.262 9 C -0.011 4.011 10 C -0.149 4.149 11 C -0.081 4.081 12 C -0.210 4.210 13 C 0.073 3.927 14 O -0.154 6.154 15 C -0.473 4.473 16 H 0.099 0.901 17 C -0.188 4.188 18 N -0.565 5.565 19 Si 0.792 3.208 20 H -0.191 1.191 21 H -0.194 1.194 22 H -0.187 1.187 23 C -0.257 4.257 24 C -0.068 4.068 25 C -0.105 4.105 26 C 0.027 3.973 27 H 0.093 0.907 28 C -0.195 4.195 29 O -0.301 6.301 30 H 0.149 0.851 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.162 0.838 38 H 0.144 0.856 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.154 0.846 42 H 0.132 0.868 43 H 0.065 0.935 44 H 0.119 0.881 45 H 0.082 0.918 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.449 23.090 0.082 23.973 hybrid contribution -0.590 -0.731 0.518 1.073 sum -7.039 22.358 0.600 23.448 Atomic orbital electron populations 1.23626 0.73986 1.05920 1.02919 1.86528 1.25534 1.31758 1.83477 1.23331 0.91400 0.81638 0.72088 1.90653 1.67383 1.37251 1.45408 1.21361 0.86920 0.85798 1.01084 0.87064 1.22587 0.89343 1.02621 0.94729 1.62196 1.08309 1.16108 1.39594 1.20882 1.01290 0.88979 0.89909 1.19562 0.95781 0.95448 1.04063 1.20891 0.97021 0.92719 0.97460 1.20445 0.99477 0.93575 1.07463 1.19677 0.94700 0.83096 0.95246 1.83514 1.49202 1.15195 1.67458 1.20702 1.02092 0.91325 1.33209 0.90100 1.25263 1.01361 0.95745 0.96477 1.69731 1.36648 1.08559 1.41605 0.85232 0.78457 0.77528 0.79595 1.19086 1.19370 1.18661 1.21285 0.99206 0.96895 1.08267 1.20874 0.99029 0.91095 0.95765 1.22957 1.03033 0.87021 0.97501 1.22534 0.78671 0.98681 0.97419 0.90701 1.21756 1.03349 0.91416 1.03017 1.88018 1.24757 1.22682 1.94617 0.85138 0.91446 0.91463 0.88333 0.93460 0.88000 0.92719 0.83821 0.85615 0.90633 0.87579 0.84644 0.86835 0.93473 0.88060 0.91755 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.36 -8.20 10.56 -51.40 -0.54 -8.74 16 3 C 0.47 12.04 7.29 71.24 0.52 12.56 16 4 O -0.52 -15.88 16.26 28.40 0.46 -15.41 16 5 C 0.11 2.46 3.33 29.88 0.10 2.56 16 6 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 7 C 0.04 0.77 4.55 86.31 0.39 1.16 16 8 N -0.54 -10.53 4.72 -899.77 -4.24 -14.77 16 9 C 0.12 2.23 5.11 85.56 0.44 2.67 16 10 C -0.15 -4.00 4.89 -19.83 -0.10 -4.10 16 11 C -0.06 -1.78 7.93 22.25 0.18 -1.60 16 12 C -0.19 -6.96 9.99 22.39 0.22 -6.74 16 13 C 0.12 5.54 6.65 22.58 0.15 5.69 16 14 O -0.25 -13.19 8.59 -22.80 -0.20 -13.39 16 15 C -0.40 -23.20 9.95 67.92 0.68 -22.52 16 16 H 0.08 4.95 5.44 -2.91 -0.02 4.94 16 17 C 0.01 0.56 5.49 84.83 0.47 1.03 16 18 N -0.92 -55.06 13.96 21.61 0.30 -54.76 16 19 Si 0.97 45.13 28.62 68.60 1.96 47.09 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 23 C -0.24 -10.07 9.17 22.39 0.21 -9.86 16 24 C -0.05 -1.59 9.69 22.25 0.22 -1.37 16 25 C 0.02 0.34 4.93 86.31 0.43 0.76 16 26 C 0.08 1.39 3.43 30.63 0.10 1.49 16 27 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 28 C -0.14 -1.65 9.57 71.98 0.69 -0.96 16 29 O -0.38 -8.93 9.65 -129.99 -1.25 -10.19 16 30 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 32 H 0.07 1.05 8.13 -2.39 -0.02 1.04 16 33 H 0.10 2.35 6.03 -2.39 -0.01 2.33 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.63 7.98 -2.39 -0.02 1.61 16 36 H 0.05 0.93 8.06 -2.39 -0.02 0.91 16 37 H 0.14 3.14 8.02 -2.91 -0.02 3.12 16 38 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 39 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.11 5.02 5.64 -2.91 -0.02 5.00 16 41 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 42 H 0.11 1.23 8.09 -2.38 -0.02 1.21 16 43 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -71.97 381.28 3.35 -68.62 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.98 Total: 19.14 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 5.88 Total: -17.58 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -3.94 Total: -69.53 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -1.53 Total: -47.74 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.96 Total: 47.09 kcal Total: -71.97 3.35 -68.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844418609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.621 kcal (2) G-P(sol) polarization free energy of solvation -71.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds