Wall clock time and date at job start Tue Mar 31 2020 19:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34080 * 118.85412 * 2 1 4 4 C 1.41511 * 118.43899 * 359.44119 * 3 2 1 5 5 O 1.21774 * 119.99916 * 101.82777 * 4 3 2 6 6 N 1.34780 * 120.00095 * 281.82170 * 4 3 2 7 7 C 1.46501 * 119.99905 * 174.99975 * 6 4 3 8 8 C 1.50697 * 109.46991 * 180.02562 * 7 6 4 9 9 O 1.21296 * 120.00264 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00015 * 179.97438 * 8 7 6 11 11 C 1.37097 * 120.00324 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99641 * 0.02562 * 11 10 8 13 13 C 1.38953 * 120.00351 * 180.02562 * 11 10 8 14 14 N 1.31405 * 119.99755 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00109 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47109 * 59.99589 * 15 13 11 17 17 H 1.48494 * 109.47238 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47035 * 300.00076 * 15 13 11 19 19 C 1.50597 * 123.11658 * 179.72586 * 3 2 1 20 20 H 1.09002 * 109.48540 * 251.73629 * 19 3 2 21 21 C 1.52997 * 109.48892 * 131.68435 * 19 3 2 22 22 N 1.45700 * 109.45249 * 11.51688 * 19 3 2 23 23 N 1.39355 * 130.67374 * 168.45914 * 22 19 3 24 24 N 1.29405 * 106.49682 * 179.89083 * 23 22 19 25 25 N 1.28916 * 110.39512 * 0.09338 * 24 23 22 26 26 C 1.30240 * 110.28498 * 0.10014 * 25 24 23 27 27 N 1.37387 * 118.85663 * 180.02562 * 2 1 3 28 28 C 1.46495 * 121.32622 * 347.84268 * 27 2 1 29 29 H 1.09004 * 109.47092 * 94.89904 * 1 2 3 30 30 H 1.09000 * 109.47347 * 214.89223 * 1 2 3 31 31 H 1.08991 * 109.47170 * 334.89611 * 1 2 3 32 32 H 0.96998 * 119.99953 * 355.00245 * 6 4 3 33 33 H 1.08997 * 109.47135 * 60.00289 * 7 6 4 34 34 H 1.08998 * 109.47006 * 300.00183 * 7 6 4 35 35 H 0.97001 * 120.00323 * 359.72693 * 10 8 7 36 36 H 0.97000 * 119.99470 * 179.97438 * 14 13 11 37 37 H 1.09007 * 109.46962 * 55.69707 * 21 19 3 38 38 H 1.09000 * 109.47727 * 175.70443 * 21 19 3 39 39 H 1.09005 * 109.47008 * 295.70747 * 21 19 3 40 40 H 1.09002 * 109.47223 * 90.00338 * 28 27 2 41 41 H 1.09002 * 109.47233 * 210.00234 * 28 27 2 42 42 H 1.09002 * 109.47102 * 330.00184 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1540 1.1743 0.0000 4 6 1.3894 2.3651 -0.0121 5 8 1.2335 2.9990 1.0158 6 7 0.8339 2.7975 -1.1614 7 6 -0.0471 3.9680 -1.1541 8 6 -0.5326 4.2400 -2.5546 9 8 -0.1774 3.5266 -3.4689 10 7 -1.3616 5.2760 -2.7911 11 6 -1.8030 5.5238 -4.0652 12 1 -1.4866 4.8885 -4.8793 13 6 -2.6573 6.5922 -4.3091 14 7 -3.0417 7.3654 -3.3186 15 14 -3.2591 6.9293 -6.0451 16 1 -4.0078 5.7493 -6.5473 17 1 -4.1516 8.1161 -6.0378 18 1 -2.0958 7.1908 -6.9303 19 6 3.6558 1.2863 0.0060 20 1 3.9904 1.6367 0.9825 21 6 4.0981 2.2783 -1.0716 22 7 4.2409 -0.0207 -0.2628 23 7 5.5517 -0.3841 -0.5658 24 7 5.5518 -1.6697 -0.7134 25 7 4.3661 -2.1427 -0.5334 26 6 3.5326 -1.1800 -0.2603 27 7 2.1700 -1.2033 -0.0005 28 6 1.4662 -2.4609 0.2624 29 1 -0.3633 -0.0878 -1.0239 30 1 -0.3634 -0.8429 0.5879 31 1 -0.3633 0.9305 0.4360 32 1 1.0173 2.3337 -1.9934 33 1 0.5024 4.8340 -0.7851 34 1 -0.9011 3.7759 -0.5047 35 1 -1.6489 5.8442 -2.0593 36 1 -3.6378 8.1114 -3.4890 37 1 3.6002 3.2346 -0.9114 38 1 5.1778 2.4170 -1.0167 39 1 3.8311 1.8899 -2.0545 40 1 1.1021 -2.8768 -0.6770 41 1 2.1495 -3.1683 0.7324 42 1 0.6233 -2.2733 0.9276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848067239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:24 Heat of formation + Delta-G solvation = 86.262819 kcal Electronic energy + Delta-G solvation = -29047.700473 eV Core-core repulsion = 24873.739783 eV Total energy + Delta-G solvation = -4173.960690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.52835 -40.86036 -39.10514 -38.19176 -36.37182 -34.59173 -33.91823 -33.44761 -32.18207 -31.46447 -30.95523 -28.85564 -28.15879 -26.64491 -25.44902 -24.35762 -23.26507 -22.28337 -21.26585 -19.80288 -19.24631 -18.86292 -18.12424 -17.55331 -17.17772 -16.42523 -16.03168 -15.83004 -15.45433 -15.29844 -15.05449 -14.56906 -14.25289 -14.12479 -13.99618 -13.66542 -13.57497 -13.43375 -13.16254 -12.87671 -12.79990 -12.52314 -12.34621 -12.29870 -12.05238 -11.98049 -11.70719 -11.60437 -11.26603 -11.17014 -10.91083 -10.57111 -10.40323 -10.33352 -10.08303 -9.70772 -8.99987 -8.74331 -8.32846 -8.18916 -6.59540 -4.01878 0.61391 1.08560 1.27176 1.90601 2.12567 2.54884 3.07585 3.16445 3.18441 3.30088 3.57024 3.64432 4.03149 4.03761 4.19542 4.32169 4.53934 4.62152 4.71583 4.75627 4.83759 4.95073 5.03060 5.06223 5.08698 5.13296 5.14572 5.25283 5.40248 5.49816 5.51289 5.66957 5.77385 5.82011 5.84372 5.95295 6.24518 6.41740 6.46638 7.38185 7.55983 7.82666 8.16825 8.19777 8.35952 8.96326 9.29964 9.77404 10.57033 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.002544 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.648051 B =11004.353806 C =11149.946943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.200 3.800 3 C -0.281 4.281 4 C 0.585 3.415 5 O -0.537 6.537 6 N -0.699 5.699 7 C 0.106 3.894 8 C 0.425 3.575 9 O -0.598 6.598 10 N -0.547 5.547 11 C -0.307 4.307 12 H 0.105 0.895 13 C 0.028 3.972 14 N -0.893 5.893 15 Si 0.933 3.067 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C 0.227 3.773 20 H 0.112 0.888 21 C -0.164 4.164 22 N -0.391 5.391 23 N -0.064 5.064 24 N -0.030 5.030 25 N -0.344 5.344 26 C 0.470 3.530 27 N -0.505 5.505 28 C 0.091 3.909 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.412 0.588 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.396 0.604 36 H 0.276 0.724 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.280 -14.366 9.530 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.098 3.902 3 C -0.294 4.294 4 C 0.370 3.630 5 O -0.414 6.414 6 N -0.353 5.353 7 C -0.021 4.021 8 C 0.211 3.789 9 O -0.484 6.484 10 N -0.181 5.181 11 C -0.436 4.436 12 H 0.123 0.877 13 C -0.176 4.176 14 N -0.533 5.533 15 Si 0.760 3.240 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.125 3.875 20 H 0.129 0.871 21 C -0.222 4.222 22 N -0.194 5.194 23 N -0.051 5.051 24 N -0.025 5.025 25 N -0.202 5.202 26 C 0.105 3.895 27 N -0.214 5.214 28 C -0.050 4.050 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.250 0.750 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.230 0.770 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.459 -14.839 9.353 19.061 hybrid contribution -1.188 0.988 -0.597 1.656 sum 6.271 -13.852 8.756 17.546 Atomic orbital electron populations 1.21286 0.86890 1.05508 1.05203 1.19715 0.94823 0.82933 0.92696 1.19596 0.94283 0.93734 1.21750 1.15929 0.79294 0.83929 0.83888 1.90883 1.60980 1.57112 1.32465 1.45936 1.47737 1.30958 1.10622 1.21021 0.94588 0.89138 0.97394 1.19700 0.85048 0.84800 0.89357 1.90510 1.62042 1.50583 1.45310 1.41791 1.40230 1.25527 1.10558 1.19676 1.25787 1.12467 0.85704 0.87714 1.25324 0.96750 0.95691 0.99807 1.69598 1.34286 1.17611 1.31835 0.85878 0.78766 0.77948 0.81440 1.19745 1.20803 1.19734 1.19814 0.87627 0.78281 1.01805 0.87053 1.22240 1.03427 0.98712 0.97838 1.51632 1.06690 1.08568 1.52504 1.82405 0.94184 1.07963 1.20522 1.78362 1.12002 1.01426 1.10731 1.74432 0.96224 1.23728 1.25845 1.21543 0.87218 0.84590 0.96193 1.42728 1.00937 1.07887 1.69852 1.22127 0.97740 0.82075 1.03045 0.88196 0.89372 0.88604 0.74959 0.89500 0.89653 0.77022 0.91451 0.89374 0.90131 0.91099 0.90423 0.89052 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 9.12 36.01 0.33 -0.67 16 2 C 0.20 1.95 6.58 -81.57 -0.54 1.41 16 3 C -0.28 -3.22 5.10 -104.89 -0.54 -3.76 16 4 C 0.58 7.81 3.45 -15.01 -0.05 7.76 16 5 O -0.54 -8.69 17.10 5.12 0.09 -8.60 16 6 N -0.70 -9.85 5.46 -64.44 -0.35 -10.20 16 7 C 0.11 1.69 6.16 -5.19 -0.03 1.66 16 8 C 0.43 8.90 7.85 -10.99 -0.09 8.82 16 9 O -0.60 -14.19 15.24 5.54 0.08 -14.11 16 10 N -0.55 -12.67 5.29 -10.96 -0.06 -12.73 16 11 C -0.31 -7.96 9.68 -14.93 -0.14 -8.10 16 12 H 0.11 2.84 7.16 -52.48 -0.38 2.46 16 13 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 14 N -0.89 -22.93 13.05 55.50 0.72 -22.20 16 15 Si 0.93 19.83 29.55 -169.99 -5.02 14.81 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 C 0.23 2.57 3.90 -69.57 -0.27 2.30 16 20 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 21 C -0.16 -1.78 9.16 37.16 0.34 -1.43 16 22 N -0.39 -4.90 3.79 -57.10 -0.22 -5.12 16 23 N -0.06 -0.88 13.87 60.35 0.84 -0.05 16 24 N -0.03 -0.43 13.40 60.35 0.81 0.38 16 25 N -0.34 -4.63 12.12 30.06 0.36 -4.27 16 26 C 0.47 5.70 8.34 -320.70 -2.67 3.02 16 27 N -0.51 -4.68 3.15 -120.68 -0.38 -5.06 16 28 C 0.09 0.48 10.17 59.84 0.61 1.09 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.41 6.05 -51.93 -0.31 0.09 16 31 H 0.10 0.88 6.60 -51.93 -0.34 0.54 16 32 H 0.41 6.00 7.40 -40.82 -0.30 5.69 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.40 8.81 7.90 -40.82 -0.32 8.49 16 36 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.09 0.98 7.26 -51.93 -0.38 0.60 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.47 8.08 -51.93 -0.42 0.05 16 42 H 0.09 0.27 6.26 -51.93 -0.33 -0.06 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -31.76 360.36 -5.72 -37.47 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -4.87 Total: 11.56 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: -3.15 Total: 12.69 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 1.73 Total: -59.25 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.17 Total: -22.71 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.76 -5.72 -37.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848067239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.736 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds