Wall clock time and date at job start Tue Mar 31 2020 19:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34080 * 118.85412 * 2 1 4 4 C 1.41511 * 118.43899 * 359.44119 * 3 2 1 5 5 O 1.21774 * 119.99916 * 101.82777 * 4 3 2 6 6 N 1.34780 * 120.00095 * 281.82170 * 4 3 2 7 7 C 1.46501 * 119.99905 * 174.99975 * 6 4 3 8 8 C 1.50697 * 109.46991 * 180.02562 * 7 6 4 9 9 O 1.21296 * 120.00264 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00015 * 179.97438 * 8 7 6 11 11 C 1.37097 * 120.00324 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99641 * 0.02562 * 11 10 8 13 13 C 1.38953 * 120.00351 * 180.02562 * 11 10 8 14 14 N 1.31405 * 119.99755 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00109 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47109 * 59.99589 * 15 13 11 17 17 H 1.48494 * 109.47238 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47035 * 300.00076 * 15 13 11 19 19 C 1.50597 * 123.11658 * 179.72586 * 3 2 1 20 20 H 1.09002 * 109.48540 * 251.73629 * 19 3 2 21 21 C 1.52997 * 109.48892 * 131.68435 * 19 3 2 22 22 N 1.45700 * 109.45249 * 11.51688 * 19 3 2 23 23 N 1.39355 * 130.67374 * 168.45914 * 22 19 3 24 24 N 1.29405 * 106.49682 * 179.89083 * 23 22 19 25 25 N 1.28916 * 110.39512 * 0.09338 * 24 23 22 26 26 C 1.30240 * 110.28498 * 0.10014 * 25 24 23 27 27 N 1.37387 * 118.85663 * 180.02562 * 2 1 3 28 28 C 1.46495 * 121.32622 * 347.84268 * 27 2 1 29 29 H 1.09004 * 109.47092 * 94.89904 * 1 2 3 30 30 H 1.09000 * 109.47347 * 214.89223 * 1 2 3 31 31 H 1.08991 * 109.47170 * 334.89611 * 1 2 3 32 32 H 0.96998 * 119.99953 * 355.00245 * 6 4 3 33 33 H 1.08997 * 109.47135 * 60.00289 * 7 6 4 34 34 H 1.08998 * 109.47006 * 300.00183 * 7 6 4 35 35 H 0.97001 * 120.00323 * 359.72693 * 10 8 7 36 36 H 0.97000 * 119.99470 * 179.97438 * 14 13 11 37 37 H 1.09007 * 109.46962 * 55.69707 * 21 19 3 38 38 H 1.09000 * 109.47727 * 175.70443 * 21 19 3 39 39 H 1.09005 * 109.47008 * 295.70747 * 21 19 3 40 40 H 1.09002 * 109.47223 * 90.00338 * 28 27 2 41 41 H 1.09002 * 109.47233 * 210.00234 * 28 27 2 42 42 H 1.09002 * 109.47102 * 330.00184 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1540 1.1743 0.0000 4 6 1.3894 2.3651 -0.0121 5 8 1.2335 2.9990 1.0158 6 7 0.8339 2.7975 -1.1614 7 6 -0.0471 3.9680 -1.1541 8 6 -0.5326 4.2400 -2.5546 9 8 -0.1774 3.5266 -3.4689 10 7 -1.3616 5.2760 -2.7911 11 6 -1.8030 5.5238 -4.0652 12 1 -1.4866 4.8885 -4.8793 13 6 -2.6573 6.5922 -4.3091 14 7 -3.0417 7.3654 -3.3186 15 14 -3.2591 6.9293 -6.0451 16 1 -4.0078 5.7493 -6.5473 17 1 -4.1516 8.1161 -6.0378 18 1 -2.0958 7.1908 -6.9303 19 6 3.6558 1.2863 0.0060 20 1 3.9904 1.6367 0.9825 21 6 4.0981 2.2783 -1.0716 22 7 4.2409 -0.0207 -0.2628 23 7 5.5517 -0.3841 -0.5658 24 7 5.5518 -1.6697 -0.7134 25 7 4.3661 -2.1427 -0.5334 26 6 3.5326 -1.1800 -0.2603 27 7 2.1700 -1.2033 -0.0005 28 6 1.4662 -2.4609 0.2624 29 1 -0.3633 -0.0878 -1.0239 30 1 -0.3634 -0.8429 0.5879 31 1 -0.3633 0.9305 0.4360 32 1 1.0173 2.3337 -1.9934 33 1 0.5024 4.8340 -0.7851 34 1 -0.9011 3.7759 -0.5047 35 1 -1.6489 5.8442 -2.0593 36 1 -3.6378 8.1114 -3.4890 37 1 3.6002 3.2346 -0.9114 38 1 5.1778 2.4170 -1.0167 39 1 3.8311 1.8899 -2.0545 40 1 1.1021 -2.8768 -0.6770 41 1 2.1495 -3.1683 0.7324 42 1 0.6233 -2.2733 0.9276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848067239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:23 Heat of formation + Delta-G solvation = 64.059951 kcal Electronic energy + Delta-G solvation = -29048.663261 eV Core-core repulsion = 24873.739783 eV Total energy + Delta-G solvation = -4174.923478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.50121 -41.86913 -40.35694 -39.61257 -37.26619 -36.22374 -35.31960 -34.42755 -33.34835 -33.14370 -31.76406 -29.71587 -29.30663 -27.52377 -26.71632 -25.83171 -24.12049 -23.21509 -22.31661 -21.35027 -20.31290 -20.02553 -19.78362 -18.47784 -18.21457 -17.53487 -17.11463 -16.94951 -16.84907 -16.48152 -16.24392 -15.95469 -15.63973 -15.27701 -15.06344 -14.89713 -14.55770 -14.13781 -13.95338 -13.88589 -13.77474 -13.72702 -13.52622 -13.45912 -13.31060 -13.01636 -12.88759 -12.66923 -12.45051 -12.40708 -12.26791 -12.14126 -11.87752 -11.54131 -11.32856 -11.14821 -10.52595 -10.21347 -10.05978 -9.15714 -8.49427 -5.98868 -0.33859 0.19198 0.38985 1.01280 1.16800 1.38876 1.44048 1.53546 1.54105 1.94735 2.10020 2.33932 2.72733 3.15224 3.18561 3.20170 3.36132 3.51314 3.74333 3.82673 4.01332 4.08623 4.17995 4.24679 4.29928 4.34408 4.38969 4.47696 4.51114 4.56064 4.60054 4.65632 4.74477 4.82471 4.94266 4.98143 5.22361 5.40231 5.52557 5.59061 5.94031 6.40939 6.51798 7.04101 7.06929 7.18667 7.47945 7.98351 8.67031 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.002544 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.648051 B =11004.353806 C =11149.946943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.219 3.781 3 C -0.309 4.309 4 C 0.602 3.398 5 O -0.563 6.563 6 N -0.697 5.697 7 C 0.119 3.881 8 C 0.434 3.566 9 O -0.625 6.625 10 N -0.560 5.560 11 C -0.335 4.335 12 H 0.085 0.915 13 C -0.008 4.008 14 N -0.915 5.915 15 Si 0.992 3.008 16 H -0.269 1.269 17 H -0.273 1.273 18 H -0.272 1.272 19 C 0.228 3.772 20 H 0.116 0.884 21 C -0.158 4.158 22 N -0.392 5.392 23 N -0.076 5.076 24 N -0.045 5.045 25 N -0.353 5.353 26 C 0.465 3.535 27 N -0.497 5.497 28 C 0.079 3.921 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.082 0.918 32 H 0.412 0.588 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.399 0.601 36 H 0.279 0.721 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.296 -15.373 10.026 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.115 3.885 3 C -0.321 4.321 4 C 0.389 3.611 5 O -0.443 6.443 6 N -0.350 5.350 7 C -0.008 4.008 8 C 0.221 3.779 9 O -0.513 6.513 10 N -0.195 5.195 11 C -0.465 4.465 12 H 0.103 0.897 13 C -0.209 4.209 14 N -0.555 5.555 15 Si 0.815 3.185 16 H -0.195 1.195 17 H -0.198 1.198 18 H -0.198 1.198 19 C 0.126 3.874 20 H 0.133 0.867 21 C -0.217 4.217 22 N -0.195 5.195 23 N -0.063 5.063 24 N -0.041 5.041 25 N -0.212 5.212 26 C 0.100 3.900 27 N -0.205 5.205 28 C -0.060 4.060 29 H 0.125 0.875 30 H 0.142 0.858 31 H 0.101 0.899 32 H 0.250 0.750 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.233 0.767 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.474 -15.871 9.868 19.778 hybrid contribution -0.869 1.186 -0.711 1.633 sum 5.605 -14.684 9.158 18.191 Atomic orbital electron populations 1.21402 0.84936 1.06373 1.06148 1.20025 0.95851 0.82563 0.90047 1.19378 0.94048 0.93661 1.25063 1.15949 0.78429 0.83859 0.82866 1.90871 1.61950 1.58164 1.33286 1.45906 1.47726 1.30416 1.10961 1.20861 0.95656 0.90363 0.93941 1.20465 0.83242 0.83189 0.90996 1.90493 1.62511 1.51203 1.47062 1.41835 1.41259 1.26528 1.09914 1.19658 1.27178 1.13151 0.86489 0.89676 1.26042 0.96484 0.95156 1.03245 1.69659 1.34681 1.17928 1.33265 0.85002 0.78232 0.78001 0.77240 1.19451 1.19790 1.19754 1.19853 0.87740 0.77829 1.01992 0.86672 1.22183 1.03805 0.98380 0.97283 1.51672 1.06406 1.09074 1.52368 1.82350 0.95096 1.07857 1.20977 1.78335 1.12685 1.01726 1.11325 1.74362 0.96187 1.24238 1.26387 1.21811 0.88312 0.84158 0.95712 1.43141 0.99749 1.08995 1.68578 1.22541 0.98365 0.80481 1.04611 0.87523 0.85802 0.89945 0.75034 0.88535 0.87721 0.76654 0.91131 0.89714 0.89511 0.91996 0.89007 0.88878 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.12 71.24 0.65 -0.93 16 2 C 0.22 3.74 6.58 40.74 0.27 4.01 16 3 C -0.31 -6.67 5.10 -20.04 -0.10 -6.78 16 4 C 0.60 15.33 3.45 85.05 0.29 15.63 16 5 O -0.56 -17.54 17.10 -4.59 -0.08 -17.62 16 6 N -0.70 -18.85 5.46 -475.98 -2.60 -21.45 16 7 C 0.12 3.66 6.16 85.63 0.53 4.19 16 8 C 0.43 18.04 7.85 87.66 0.69 18.73 16 9 O -0.62 -29.70 15.24 -3.08 -0.05 -29.75 16 10 N -0.56 -26.08 5.29 -306.98 -1.62 -27.71 16 11 C -0.34 -17.57 9.68 84.04 0.81 -16.76 16 12 H 0.09 4.71 7.16 -2.91 -0.02 4.69 16 13 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 14 N -0.92 -46.75 13.05 21.66 0.28 -46.47 16 15 Si 0.99 40.33 29.55 68.60 2.03 42.36 16 16 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 17 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 18 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 19 C 0.23 5.00 3.90 44.36 0.17 5.18 16 20 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 21 C -0.16 -3.39 9.16 71.98 0.66 -2.73 16 22 N -0.39 -9.55 3.79 -334.57 -1.27 -10.82 16 23 N -0.08 -2.08 13.87 37.02 0.51 -1.56 16 24 N -0.05 -1.29 13.40 37.02 0.50 -0.80 16 25 N -0.35 -9.20 12.12 -58.81 -0.71 -9.91 16 26 C 0.47 10.67 8.34 260.75 2.17 12.85 16 27 N -0.50 -7.99 3.15 -535.72 -1.69 -9.68 16 28 C 0.08 0.57 10.17 127.77 1.30 1.87 16 29 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.12 0.58 6.05 -2.39 -0.01 0.57 16 31 H 0.08 1.30 6.60 -2.39 -0.02 1.28 16 32 H 0.41 11.62 7.40 -92.71 -0.69 10.94 16 33 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.40 17.82 7.90 -92.71 -0.73 17.09 16 36 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 37 H 0.08 1.86 7.26 -2.38 -0.02 1.84 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 42 H 0.12 0.15 6.26 -2.39 -0.01 0.13 16 Total: -1.00 -68.52 360.36 2.91 -65.61 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -0.31 Total: 32.49 kcal Atomic # 6 Polarization: 27.39 SS G_CDS: 7.91 Total: 35.30 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -6.60 Total: -128.40 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -0.13 Total: -47.37 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -68.52 2.91 -65.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848067239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.674 kcal (2) G-P(sol) polarization free energy of solvation -68.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds