Wall clock time and date at job start Tue Mar 31 2020 19:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00117 * 2 1 4 4 O 1.20822 * 119.99617 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00162 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47072 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.46765 * 179.97438 * 6 5 3 8 8 C 1.36897 * 120.00345 * 279.58921 * 7 6 5 9 9 H 1.08006 * 120.00006 * 36.96567 * 8 7 6 10 10 C 1.39022 * 120.00587 * 216.96982 * 8 7 6 11 11 N 1.31390 * 119.99668 * 25.90581 * 10 8 7 12 12 Si 1.86798 * 120.00425 * 205.91619 * 10 8 7 13 13 H 1.48500 * 109.46971 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47776 * 119.99312 * 12 10 8 15 15 H 1.48503 * 109.46831 * 239.99954 * 12 10 8 16 16 C 1.34779 * 119.99780 * 99.59546 * 7 6 5 17 17 O 1.21628 * 119.99939 * 186.90736 * 16 7 6 18 18 C 1.47490 * 120.00272 * 6.90315 * 16 7 6 19 19 C 1.39796 * 120.09662 * 151.14688 * 18 16 7 20 20 C 1.37685 * 119.90690 * 180.27258 * 19 18 16 21 21 C 1.39016 * 120.09322 * 359.51890 * 20 19 18 22 22 O 1.35712 * 119.90624 * 180.20698 * 21 20 19 23 23 C 1.42901 * 116.99973 * 185.64060 * 22 21 20 24 24 C 1.52997 * 109.47007 * 155.04792 * 23 22 21 25 25 C 1.52999 * 109.47246 * 275.04466 * 23 22 21 26 26 C 1.39006 * 120.18409 * 0.46137 * 21 20 19 27 27 C 1.37682 * 120.09984 * 359.79261 * 26 21 20 28 28 H 1.09000 * 109.46867 * 299.99379 * 1 2 3 29 29 H 1.08996 * 109.47655 * 60.00158 * 1 2 3 30 30 H 1.09006 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46949 * 59.99882 * 5 3 2 32 32 H 1.09004 * 109.46839 * 299.99595 * 5 3 2 33 33 H 1.08995 * 109.47042 * 59.99914 * 6 5 3 34 34 H 1.09004 * 109.46740 * 299.99389 * 6 5 3 35 35 H 0.97002 * 119.99612 * 184.98947 * 11 10 8 36 36 H 1.07998 * 120.04717 * 359.97438 * 19 18 16 37 37 H 1.08006 * 119.95615 * 179.74773 * 20 19 18 38 38 H 1.08994 * 109.46961 * 35.04722 * 23 22 21 39 39 H 1.09000 * 109.47409 * 59.99707 * 24 23 22 40 40 H 1.08994 * 109.47185 * 179.97438 * 24 23 22 41 41 H 1.09002 * 109.47272 * 299.99665 * 24 23 22 42 42 H 1.08994 * 109.47207 * 180.02562 * 25 23 22 43 43 H 1.08996 * 109.46973 * 300.00681 * 25 23 22 44 44 H 1.09004 * 109.47059 * 59.99777 * 25 23 22 45 45 H 1.08003 * 119.95027 * 179.76558 * 26 21 20 46 46 H 1.08004 * 120.05086 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8187 0.0002 8 6 6.1570 2.6567 1.1691 9 1 5.8167 1.9428 1.9047 10 6 7.2997 3.4111 1.4095 11 7 7.4486 4.5807 0.8299 12 14 8.6236 2.7617 2.5563 13 1 8.2181 1.4316 3.0775 14 1 9.9030 2.6336 1.8135 15 1 8.8017 3.7038 3.6903 16 6 6.1258 3.0488 -1.1506 17 8 7.3403 2.9880 -1.1755 18 6 5.3784 3.3744 -2.3797 19 6 5.9658 4.1708 -3.3671 20 6 5.2624 4.4769 -4.5105 21 6 3.9736 3.9869 -4.6882 22 8 3.2854 4.2876 -5.8186 23 6 1.9244 3.8568 -5.8833 24 6 1.1506 4.7551 -6.8503 25 6 1.8704 2.4098 -6.3776 26 6 3.3860 3.1943 -3.7091 27 6 4.0804 2.8877 -2.5604 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7806 0.8892 33 1 3.6108 3.2356 0.8906 34 1 3.6101 3.2367 -0.8894 35 1 8.2764 5.0745 0.9396 36 1 6.9680 4.5494 -3.2312 37 1 5.7139 5.0955 -5.2721 38 1 1.4761 3.9190 -4.8918 39 1 1.5990 4.6929 -7.8419 40 1 0.1126 4.4263 -6.9001 41 1 1.1890 5.7860 -6.4982 42 1 0.8323 2.0814 -6.4274 43 1 2.3188 2.3476 -7.3691 44 1 2.4217 1.7697 -5.6888 45 1 2.3832 2.8188 -3.8494 46 1 3.6229 2.2722 -1.7999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871339848.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:17 Heat of formation + Delta-G solvation = -110.942696 kcal Electronic energy + Delta-G solvation = -29842.577661 eV Core-core repulsion = 25699.020340 eV Total energy + Delta-G solvation = -4143.557321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.89614 -41.31009 -40.39368 -38.15266 -37.70291 -36.59369 -34.59519 -33.97993 -32.22023 -31.81142 -30.92755 -28.62455 -28.13922 -27.04352 -25.40322 -24.47031 -23.65620 -22.23494 -21.71953 -21.15308 -19.37879 -18.90704 -18.80519 -17.75973 -17.72737 -17.22351 -17.11725 -16.64117 -16.42789 -16.14862 -15.75342 -15.43323 -15.34071 -14.82129 -14.70086 -14.45125 -14.29568 -14.19514 -13.70108 -13.63329 -13.47605 -13.34776 -13.25631 -13.11363 -12.92437 -12.87830 -12.78109 -12.74662 -12.51351 -12.19617 -12.08787 -11.87532 -11.75420 -11.66076 -11.60037 -11.33867 -10.87376 -10.22053 -9.98662 -9.30179 -9.13631 -8.28502 -5.96831 0.11260 0.31619 1.13020 1.39580 1.47613 1.55561 1.68187 2.17882 2.21800 2.40505 2.85062 3.18092 3.26354 3.68531 3.75691 3.83771 3.88273 3.91324 3.99509 4.04834 4.18463 4.23674 4.29099 4.35584 4.37316 4.39325 4.48420 4.57788 4.72876 4.74286 4.76546 4.83714 4.88813 4.91803 4.95551 5.04618 5.14537 5.23355 5.27988 5.32929 5.34743 5.44283 5.53563 5.68975 6.12219 6.44473 6.69871 6.93576 7.14409 7.56825 8.24605 8.80393 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009406 B = 0.004432 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.176053 B = 6316.700811 C = 8869.272079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.476 3.524 4 O -0.528 6.528 5 C -0.130 4.130 6 C 0.084 3.916 7 N -0.451 5.451 8 C -0.367 4.367 9 H 0.097 0.903 10 C 0.025 3.975 11 N -0.864 5.864 12 Si 0.967 3.033 13 H -0.251 1.251 14 H -0.296 1.296 15 H -0.277 1.277 16 C 0.504 3.496 17 O -0.590 6.590 18 C -0.166 4.166 19 C -0.045 4.045 20 C -0.159 4.159 21 C 0.144 3.856 22 O -0.317 6.317 23 C 0.061 3.939 24 C -0.144 4.144 25 C -0.178 4.178 26 C -0.208 4.208 27 C -0.087 4.087 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.261 0.739 36 H 0.116 0.884 37 H 0.149 0.851 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.059 0.941 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.157 0.843 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.070 -6.701 -11.268 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.418 6.418 5 C -0.168 4.168 6 C -0.039 4.039 7 N -0.170 5.170 8 C -0.493 4.493 9 H 0.114 0.886 10 C -0.182 4.182 11 N -0.499 5.499 12 Si 0.791 3.209 13 H -0.174 1.174 14 H -0.222 1.222 15 H -0.203 1.203 16 C 0.295 3.705 17 O -0.474 6.474 18 C -0.169 4.169 19 C -0.064 4.064 20 C -0.178 4.178 21 C 0.098 3.902 22 O -0.231 6.231 23 C 0.006 3.994 24 C -0.201 4.201 25 C -0.235 4.235 26 C -0.227 4.227 27 C -0.105 4.105 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.150 0.850 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.071 0.929 36 H 0.134 0.866 37 H 0.167 0.833 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.175 0.825 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.586 -6.164 -11.383 21.837 hybrid contribution 0.933 0.171 0.907 1.312 sum -16.653 -5.993 -10.477 20.567 Atomic orbital electron populations 1.23600 0.74549 1.05787 1.02781 1.86518 1.25229 1.32342 1.83667 1.23550 0.91573 0.81466 0.71466 1.90664 1.67591 1.37061 1.46439 1.21803 0.87564 0.99926 1.07517 1.22256 0.82677 0.94571 1.04413 1.43325 1.03921 1.63908 1.05894 1.19450 1.11203 1.21386 0.97251 0.88551 1.26001 1.01372 0.92789 0.98034 1.70043 1.25125 1.10631 1.44074 0.85327 0.78562 0.79467 0.77516 1.17390 1.22246 1.20287 1.18319 0.87045 0.81926 0.83241 1.90539 1.15808 1.55450 1.85575 1.20155 0.96281 1.04019 0.96470 1.20959 0.99061 0.94510 0.91901 1.20438 0.93464 1.04946 0.98932 1.19153 0.91721 0.93329 0.86018 1.86068 1.26599 1.75206 1.35217 1.22828 0.79146 0.96095 1.01317 1.21877 1.00307 0.99179 0.98778 1.22387 1.04219 0.94593 1.02334 1.21394 1.02382 1.04202 0.94675 1.22131 0.92285 0.98836 0.97235 0.92023 0.91422 0.84972 0.86361 0.86008 0.91847 0.87553 0.92948 0.86609 0.83285 0.90449 0.91377 0.88121 0.92142 0.88604 0.91480 0.92682 0.82520 0.82285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.36 -8.37 10.57 -51.41 -0.54 -8.91 16 3 C 0.48 13.36 7.74 71.24 0.55 13.91 16 4 O -0.53 -17.08 15.73 21.98 0.35 -16.73 16 5 C -0.13 -4.01 5.13 29.85 0.15 -3.85 16 6 C 0.08 3.36 4.13 86.38 0.36 3.71 16 7 N -0.45 -22.86 2.57 -639.18 -1.64 -24.51 16 8 C -0.37 -20.06 9.19 84.09 0.77 -19.28 16 9 H 0.10 4.86 7.95 -2.91 -0.02 4.84 16 10 C 0.03 1.45 4.12 84.95 0.35 1.80 16 11 N -0.86 -53.22 11.88 21.68 0.26 -52.97 16 12 Si 0.97 45.61 29.63 68.60 2.03 47.64 16 13 H -0.25 -10.87 7.11 99.48 0.71 -10.16 16 14 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 C 0.50 27.04 6.65 86.68 0.58 27.61 16 17 O -0.59 -36.82 14.45 -4.12 -0.06 -36.88 16 18 C -0.17 -7.28 5.62 -20.08 -0.11 -7.39 16 19 C -0.04 -1.84 9.59 22.52 0.22 -1.63 16 20 C -0.16 -5.28 9.97 22.33 0.22 -5.06 16 21 C 0.14 4.31 6.61 22.64 0.15 4.46 16 22 O -0.32 -8.08 9.79 -90.33 -0.88 -8.96 16 23 C 0.06 1.11 2.84 30.59 0.09 1.19 16 24 C -0.14 -1.91 9.56 71.98 0.69 -1.22 16 25 C -0.18 -2.66 9.17 71.98 0.66 -2.00 16 26 C -0.21 -6.06 8.22 22.32 0.18 -5.88 16 27 C -0.09 -3.06 7.51 22.52 0.17 -2.89 16 28 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 29 H 0.07 1.00 8.13 -2.39 -0.02 0.98 16 30 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.12 3.39 7.24 -2.39 -0.02 3.37 16 32 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 33 H 0.06 2.66 8.07 -2.39 -0.02 2.64 16 34 H 0.11 4.13 3.76 -5.84 -0.02 4.11 16 35 H 0.26 15.53 8.32 -92.71 -0.77 14.76 16 36 H 0.12 5.10 7.90 -2.91 -0.02 5.08 16 37 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 38 H 0.08 1.36 6.29 -2.39 -0.02 1.35 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.05 0.95 6.91 -2.38 -0.02 0.94 16 45 H 0.16 3.54 5.40 -2.91 -0.02 3.52 16 46 H 0.16 5.22 2.46 -2.91 -0.01 5.21 16 Total: -1.00 -77.60 378.18 6.72 -70.88 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.99 Total: 25.34 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 6.22 Total: 5.09 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -1.39 Total: -77.47 kcal Atomic # 8 Polarization: -70.34 SS G_CDS: -1.14 Total: -71.48 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -77.60 6.72 -70.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339848.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.064 kcal (2) G-P(sol) polarization free energy of solvation -77.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds