Wall clock time and date at job start Tue Mar 31 2020 19:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99383 * 2 1 4 4 O 1.20829 * 120.00134 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99539 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47003 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.47116 * 179.97438 * 6 5 3 8 8 C 1.37103 * 119.99729 * 90.00312 * 7 6 5 9 9 H 1.07995 * 119.99863 * 305.15728 * 8 7 6 10 10 C 1.38946 * 119.99846 * 125.15985 * 8 7 6 11 11 N 1.31411 * 120.00208 * 335.92640 * 10 8 7 12 12 Si 1.86800 * 119.99634 * 155.92069 * 10 8 7 13 13 H 1.48495 * 109.47421 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46990 * 120.00192 * 12 10 8 15 15 H 1.48503 * 109.47378 * 240.00099 * 12 10 8 16 16 C 1.34771 * 120.00007 * 270.00077 * 7 6 5 17 17 O 1.21287 * 120.00388 * 4.80005 * 16 7 6 18 18 C 1.50708 * 119.99850 * 184.80060 * 16 7 6 19 19 H 1.09000 * 109.47046 * 47.55083 * 18 16 7 20 20 C 1.52999 * 109.47025 * 287.54887 * 18 16 7 21 21 C 1.50702 * 109.46680 * 167.55016 * 18 16 7 22 22 C 1.38279 * 119.97720 * 60.00153 * 21 18 16 23 23 C 1.38248 * 120.11272 * 179.97438 * 22 21 18 24 24 C 1.38160 * 120.05347 * 359.97438 * 23 22 21 25 25 C 1.38709 * 119.94686 * 0.02562 * 24 23 22 26 26 O 1.35902 * 120.05590 * 180.02562 * 25 24 23 27 27 C 1.42898 * 116.99833 * 359.97438 * 26 25 24 28 28 C 1.38125 * 119.96848 * 239.71920 * 21 18 16 29 29 H 1.08995 * 109.47312 * 60.00592 * 1 2 3 30 30 H 1.08999 * 109.46748 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47265 * 299.99532 * 1 2 3 32 32 H 1.08998 * 109.47656 * 59.99775 * 5 3 2 33 33 H 1.09002 * 109.47456 * 299.99879 * 5 3 2 34 34 H 1.08999 * 109.47088 * 60.00082 * 6 5 3 35 35 H 1.09000 * 109.47323 * 299.99606 * 6 5 3 36 36 H 0.96998 * 120.00019 * 175.37247 * 11 10 8 37 37 H 1.08997 * 109.47617 * 65.82155 * 20 18 16 38 38 H 1.08999 * 109.46962 * 185.83109 * 20 18 16 39 39 H 1.09002 * 109.47026 * 305.82005 * 20 18 16 40 40 H 1.08003 * 119.94221 * 359.97420 * 22 21 18 41 41 H 1.08003 * 119.96991 * 180.02562 * 23 22 21 42 42 H 1.08008 * 120.02476 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.47515 * 299.99967 * 27 26 25 44 44 H 1.09000 * 109.47535 * 60.00084 * 27 26 25 45 45 H 1.09003 * 109.46975 * 180.02562 * 27 26 25 46 46 H 1.08009 * 120.02856 * 0.02562 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 3.9999 2.7423 -0.0011 7 7 5.4630 2.8190 -0.0011 8 6 6.1475 2.8545 -1.1884 9 1 5.9914 2.0804 -1.9251 10 6 7.0422 3.8865 -1.4439 11 7 6.9102 5.0387 -0.8258 12 14 8.4326 3.6360 -2.6659 13 1 8.3615 2.2608 -3.2217 14 1 8.3060 4.6223 -3.7689 15 1 9.7355 3.8260 -1.9791 16 6 6.1358 2.8547 1.1661 17 8 5.5380 2.7357 2.2147 18 6 7.6312 3.0425 1.1684 19 1 7.8946 3.8682 0.5074 20 6 8.3069 1.7606 0.6775 21 6 8.0964 3.3514 2.5681 22 6 7.8719 2.4438 3.5869 23 6 8.2979 2.7241 4.8719 24 6 8.9499 3.9121 5.1410 25 6 9.1764 4.8242 4.1208 26 8 9.8180 5.9932 4.3829 27 6 10.2313 6.2179 5.7322 28 6 8.7520 4.5384 2.8311 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 3.9557 0.7811 -0.8908 33 1 3.9563 0.7807 0.8892 34 1 3.6105 3.2366 0.8889 35 1 3.6099 3.2361 -0.8911 36 1 7.5725 5.7358 -0.9528 37 1 8.0517 1.5930 -0.3688 38 1 9.3879 1.8589 0.7767 39 1 7.9625 0.9166 1.2752 40 1 7.3627 1.5144 3.3784 41 1 8.1217 2.0134 5.6658 42 1 9.2830 4.1304 6.1450 43 1 9.3590 6.2097 6.3857 44 1 10.9209 5.4307 6.0369 45 1 10.7291 7.1851 5.8034 46 1 8.9309 5.2452 2.0342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871340929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:10 Heat of formation + Delta-G solvation = -143.278239 kcal Electronic energy + Delta-G solvation = -29635.519281 eV Core-core repulsion = 25490.559785 eV Total energy + Delta-G solvation = -4144.959496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61215 -41.28368 -40.44713 -38.41941 -37.62190 -36.64229 -35.15786 -33.70454 -32.12110 -31.57446 -29.87380 -28.65586 -28.09056 -26.91980 -25.85955 -24.43373 -23.43238 -22.40926 -21.60233 -21.01035 -19.11184 -18.68355 -18.23822 -17.65738 -17.62851 -17.17014 -16.99082 -16.72233 -16.61425 -16.57669 -16.00717 -15.57521 -15.19583 -15.03930 -14.65565 -14.46228 -14.24089 -14.20117 -13.84465 -13.82502 -13.43830 -13.35301 -13.20744 -13.01905 -12.88097 -12.85120 -12.74758 -12.48010 -12.21184 -12.11727 -12.07015 -11.92915 -11.81214 -11.79385 -11.62307 -11.55353 -10.64991 -10.13888 -9.68524 -9.30582 -9.04594 -8.32243 -6.22094 0.43471 0.59092 1.12712 1.43995 1.51070 1.61313 1.68927 2.14740 2.35183 2.40488 2.83722 2.96677 3.16155 3.81294 3.89859 3.93938 4.04780 4.15667 4.21914 4.31594 4.32690 4.33950 4.41588 4.44620 4.48458 4.55937 4.58486 4.60386 4.69631 4.70527 4.73699 4.82765 4.92753 5.05601 5.11378 5.17025 5.31439 5.33055 5.37284 5.42684 5.49423 5.58964 5.85002 5.93784 6.05303 6.53302 6.65041 6.69947 7.00228 7.62001 8.06756 8.70295 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.003842 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.512300 B = 7286.857821 C = 9072.469700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.474 3.526 4 O -0.540 6.540 5 C -0.110 4.110 6 C 0.131 3.869 7 N -0.459 5.459 8 C -0.354 4.354 9 H 0.097 0.903 10 C 0.026 3.974 11 N -0.883 5.883 12 Si 0.946 3.054 13 H -0.243 1.243 14 H -0.286 1.286 15 H -0.269 1.269 16 C 0.514 3.486 17 O -0.622 6.622 18 C -0.078 4.078 19 H 0.112 0.888 20 C -0.125 4.125 21 C -0.031 4.031 22 C -0.132 4.132 23 C -0.086 4.086 24 C -0.211 4.211 25 C 0.112 3.888 26 O -0.341 6.341 27 C 0.019 3.981 28 C -0.172 4.172 29 H 0.062 0.938 30 H 0.137 0.863 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.272 0.728 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.116 0.884 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.118 0.882 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 -7.538 6.484 10.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.318 3.682 4 O -0.430 6.430 5 C -0.149 4.149 6 C 0.007 3.993 7 N -0.179 5.179 8 C -0.481 4.481 9 H 0.115 0.885 10 C -0.179 4.179 11 N -0.519 5.519 12 Si 0.769 3.231 13 H -0.165 1.165 14 H -0.212 1.212 15 H -0.194 1.194 16 C 0.305 3.695 17 O -0.508 6.508 18 C -0.099 4.099 19 H 0.130 0.870 20 C -0.183 4.183 21 C -0.032 4.032 22 C -0.150 4.150 23 C -0.103 4.103 24 C -0.229 4.229 25 C 0.067 3.933 26 O -0.256 6.256 27 C -0.076 4.076 28 C -0.190 4.190 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.123 0.877 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.134 0.866 41 H 0.171 0.829 42 H 0.175 0.825 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.136 0.864 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.442 -6.951 6.806 10.030 hybrid contribution 0.018 0.758 -0.553 0.938 sum 2.460 -6.193 6.253 9.138 Atomic orbital electron populations 1.23578 0.74765 1.05855 1.02459 1.86512 1.25136 1.32376 1.83765 1.23856 0.92145 0.81240 0.70910 1.90642 1.67923 1.37511 1.46970 1.21620 0.86611 0.99971 1.06674 1.21025 0.83712 0.93800 1.00737 1.43411 1.02983 1.65890 1.05576 1.19573 1.23352 1.08646 0.96563 0.88533 1.26224 1.01209 0.92582 0.97849 1.70216 1.33769 1.03260 1.44626 0.85608 0.79061 0.79871 0.78564 1.16546 1.21219 1.19432 1.20600 0.89862 0.76204 0.82851 1.90492 1.71275 1.56160 1.32887 1.20484 0.92270 1.02917 0.94194 0.87016 1.21635 0.99555 0.94384 1.02690 1.19565 0.94745 0.93211 0.95649 1.20962 1.00757 1.00145 0.93140 1.21226 0.95895 0.96787 0.96429 1.21419 1.06470 0.95667 0.99341 1.18987 0.94236 0.86334 0.93732 1.86035 1.71723 1.35290 1.32526 1.23345 1.00323 1.03999 0.79883 1.20331 1.04991 0.98310 0.95412 0.91885 0.84515 0.92297 0.85626 0.87662 0.94285 0.91713 0.91840 0.90362 0.91729 0.92436 0.86565 0.82938 0.82510 0.91964 0.91216 0.86357 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -10.31 10.57 -51.42 -0.54 -10.85 16 3 C 0.47 16.51 7.96 71.23 0.57 17.08 16 4 O -0.54 -22.00 15.73 21.96 0.35 -21.66 16 5 C -0.11 -3.95 6.14 29.85 0.18 -3.77 16 6 C 0.13 5.95 4.63 86.38 0.40 6.35 16 7 N -0.46 -22.29 2.40 -635.53 -1.52 -23.82 16 8 C -0.35 -16.73 7.20 84.04 0.60 -16.13 16 9 H 0.10 4.26 7.94 -2.91 -0.02 4.24 16 10 C 0.03 1.23 3.05 84.93 0.26 1.49 16 11 N -0.88 -46.46 11.75 21.66 0.25 -46.21 16 12 Si 0.95 37.05 28.78 68.60 1.97 39.02 16 13 H -0.24 -8.69 7.11 99.48 0.71 -7.99 16 14 H -0.29 -11.44 7.11 99.48 0.71 -10.73 16 15 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 16 C 0.51 25.71 6.50 87.66 0.57 26.28 16 17 O -0.62 -33.33 14.35 -3.05 -0.04 -33.37 16 18 C -0.08 -3.50 2.00 -12.28 -0.02 -3.52 16 19 H 0.11 5.50 4.08 -2.39 -0.01 5.49 16 20 C -0.13 -4.71 8.63 71.98 0.62 -4.09 16 21 C -0.03 -1.32 4.52 -19.88 -0.09 -1.41 16 22 C -0.13 -5.01 7.89 22.28 0.18 -4.84 16 23 C -0.09 -2.65 10.04 22.25 0.22 -2.42 16 24 C -0.21 -6.23 9.04 22.36 0.20 -6.03 16 25 C 0.11 3.97 6.69 22.50 0.15 4.12 16 26 O -0.34 -10.82 10.50 -92.45 -0.97 -11.79 16 27 C 0.02 0.36 9.81 113.37 1.11 1.47 16 28 C -0.17 -7.17 9.61 22.36 0.21 -6.95 16 29 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 30 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 32 H 0.13 3.97 8.14 -2.39 -0.02 3.95 16 33 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 34 H 0.04 1.97 7.45 -2.39 -0.02 1.95 16 35 H 0.06 3.02 8.00 -2.39 -0.02 3.00 16 36 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 37 H 0.08 2.95 5.47 -2.39 -0.01 2.94 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.06 2.00 7.60 -2.39 -0.02 1.99 16 40 H 0.12 4.45 7.28 -2.91 -0.02 4.43 16 41 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.16 3.35 6.30 -2.91 -0.02 3.33 16 43 H 0.06 1.09 7.66 -2.39 -0.02 1.07 16 44 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 45 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.11 4.74 7.94 -2.91 -0.02 4.72 16 Total: -1.00 -68.21 380.37 6.85 -61.37 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: 0.99 Total: 37.95 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 6.37 Total: 9.37 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -1.27 Total: -70.03 kcal Atomic # 8 Polarization: -76.46 SS G_CDS: -1.21 Total: -77.68 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 1.97 Total: 39.02 kcal Total: -68.21 6.85 -61.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871340929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.912 kcal (2) G-P(sol) polarization free energy of solvation -68.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds