Wall clock time and date at job start Tue Mar 31 2020 19:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47308 * 2 1 4 4 O 1.42902 * 109.47402 * 179.97438 * 3 2 1 5 5 C 1.35907 * 116.99977 * 179.97438 * 4 3 2 6 6 C 1.38863 * 119.98438 * 359.73380 * 5 4 3 7 7 C 1.38265 * 120.25370 * 179.72042 * 6 5 4 8 8 C 1.37990 * 120.20758 * 0.55091 * 7 6 5 9 9 C 1.39638 * 119.95923 * 359.72454 * 8 7 6 10 10 C 1.47743 * 120.12051 * 180.02562 * 9 8 7 11 11 O 1.21591 * 119.99419 * 147.74791 * 10 9 8 12 12 N 1.34774 * 120.00300 * 327.75102 * 10 9 8 13 13 C 1.36874 * 119.99769 * 3.58725 * 12 10 9 14 14 H 1.08000 * 120.00283 * 319.14098 * 13 12 10 15 15 C 1.39050 * 119.99512 * 139.14060 * 13 12 10 16 16 N 1.31369 * 119.99722 * 161.69256 * 15 13 12 17 17 Si 1.86801 * 120.00310 * 341.68637 * 15 13 12 18 18 H 1.48500 * 109.46862 * 95.26623 * 17 15 13 19 19 H 1.48497 * 109.47142 * 215.26619 * 17 15 13 20 20 H 1.48500 * 109.46981 * 335.27089 * 17 15 13 21 21 C 1.46497 * 120.00024 * 183.59206 * 12 10 9 22 22 C 1.52997 * 109.47198 * 89.99864 * 21 12 10 23 23 C 1.50701 * 109.47135 * 179.97438 * 22 21 12 24 24 O 1.20833 * 120.00099 * 359.97438 * 23 22 21 25 25 O 1.34233 * 120.00265 * 179.97438 * 23 22 21 26 26 C 1.45204 * 116.99932 * 180.02562 * 25 23 22 27 27 C 1.38433 * 119.97596 * 180.02562 * 5 4 3 28 28 H 1.09002 * 109.47315 * 59.99686 * 1 2 3 29 29 H 1.08998 * 109.47146 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46901 * 299.99595 * 1 2 3 31 31 H 1.09004 * 109.46901 * 240.00405 * 2 1 3 32 32 H 1.09002 * 109.47315 * 120.00314 * 2 1 3 33 33 H 1.09004 * 109.46809 * 60.00348 * 3 2 1 34 34 H 1.08992 * 109.47325 * 300.00435 * 3 2 1 35 35 H 1.07997 * 119.87636 * 359.97438 * 6 5 4 36 36 H 1.07992 * 119.89716 * 180.27486 * 7 6 5 37 37 H 1.07995 * 120.01906 * 179.74679 * 8 7 6 38 38 H 0.96998 * 120.00002 * 180.02562 * 16 15 13 39 39 H 1.09006 * 109.46998 * 210.00122 * 21 12 10 40 40 H 1.09005 * 109.46913 * 329.99789 * 21 12 10 41 41 H 1.08993 * 109.47057 * 299.99475 * 22 21 12 42 42 H 1.08995 * 109.47136 * 60.00207 * 22 21 12 43 43 H 1.08995 * 109.47053 * 60.00215 * 26 25 23 44 44 H 1.08998 * 109.46643 * 179.97438 * 26 25 23 45 45 H 1.08995 * 109.46804 * 299.99783 * 26 25 23 46 46 H 1.07998 * 120.11000 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0860 2.6534 0.0001 6 6 3.3294 3.8178 -0.0065 7 6 3.9513 5.0527 -0.0011 8 6 5.3286 5.1364 -0.0007 9 6 6.0981 3.9712 0.0002 10 6 7.5730 4.0567 0.0012 11 8 8.2310 3.2030 0.5639 12 7 8.1891 5.0810 -0.6214 13 6 7.4481 6.0807 -1.1914 14 1 6.5464 5.8415 -1.7356 15 6 7.8562 7.4044 -1.0697 16 7 7.3807 8.3161 -1.8872 17 14 9.0805 7.8862 0.2564 18 1 10.4514 7.8929 -0.3144 19 1 8.7500 9.2412 0.7664 20 1 9.0133 6.9076 1.3713 21 6 9.6520 5.1243 -0.6882 22 6 10.1262 4.4057 -1.9529 23 6 11.6310 4.4509 -2.0219 24 8 12.2596 5.0017 -1.1493 25 8 12.2731 3.8791 -3.0528 26 6 13.7228 3.9608 -3.0534 27 6 5.4685 2.7253 0.0001 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9562 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 2.2511 3.7586 -0.0116 36 1 3.3572 5.9545 -0.0018 37 1 5.8111 6.1026 -0.0007 38 1 7.6657 9.2394 -1.8026 39 1 9.9839 6.1623 -0.7138 40 1 10.0705 4.6305 0.1889 41 1 9.7944 3.3679 -1.9272 42 1 9.7078 4.8995 -2.8299 43 1 14.1144 3.4759 -2.1593 44 1 14.1144 3.4601 -3.9389 45 1 14.0277 5.0071 -3.0625 46 1 6.0581 1.8205 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871341144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:20 Heat of formation + Delta-G solvation = -123.811059 kcal Electronic energy + Delta-G solvation = -28795.195966 eV Core-core repulsion = 24651.080631 eV Total energy + Delta-G solvation = -4144.115336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.27920 -39.92950 -38.95075 -36.83759 -36.30330 -35.24514 -33.99576 -32.44610 -31.34806 -30.42606 -29.36261 -27.59820 -26.58547 -25.18392 -24.57730 -22.68209 -21.82051 -21.33627 -20.51060 -19.41342 -18.19263 -17.51338 -16.66760 -16.47722 -16.37917 -16.25209 -15.99653 -15.71135 -15.32240 -14.82147 -14.25153 -14.09316 -14.01990 -13.88816 -13.59299 -13.32536 -13.03751 -12.71886 -12.63258 -12.53372 -12.46048 -12.26093 -12.09713 -12.04839 -11.78414 -11.37561 -11.32103 -11.21013 -11.07246 -10.83950 -10.66778 -10.55908 -10.51941 -10.25895 -10.10375 -9.96248 -9.34730 -8.78594 -8.45261 -7.98356 -7.68623 -6.60489 -4.25028 1.51148 1.99102 2.48508 2.87638 3.05380 3.19367 3.27861 3.30284 3.63144 4.03421 4.24130 4.43483 4.71884 4.74033 4.82252 5.04875 5.10214 5.15757 5.17298 5.22143 5.24534 5.27822 5.34611 5.47689 5.48812 5.49307 5.62571 5.71449 5.75441 5.86841 5.88197 5.99916 6.00362 6.01148 6.16879 6.28107 6.42728 6.46861 6.60989 6.69178 7.02784 7.12672 7.16645 7.29225 7.76343 7.89779 7.99221 8.11304 8.77075 9.14708 9.47630 10.46490 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013015 B = 0.003068 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.780443 B = 9123.588297 C =10648.321797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.320 6.320 5 C 0.103 3.897 6 C -0.197 4.197 7 C -0.103 4.103 8 C -0.098 4.098 9 C -0.065 4.065 10 C 0.524 3.476 11 O -0.586 6.586 12 N -0.455 5.455 13 C -0.354 4.354 14 H 0.116 0.884 15 C 0.071 3.929 16 N -0.851 5.851 17 Si 0.867 3.133 18 H -0.268 1.268 19 H -0.285 1.285 20 H -0.257 1.257 21 C 0.114 3.886 22 C -0.123 4.123 23 C 0.468 3.532 24 O -0.511 6.511 25 O -0.362 6.362 26 C 0.035 3.965 27 C -0.108 4.108 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.169 0.831 38 H 0.278 0.722 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.060 0.940 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.654 -8.658 -0.973 10.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.015 4.015 4 O -0.234 6.234 5 C 0.058 3.942 6 C -0.216 4.216 7 C -0.121 4.121 8 C -0.116 4.116 9 C -0.068 4.068 10 C 0.314 3.686 11 O -0.471 6.471 12 N -0.175 5.175 13 C -0.480 4.480 14 H 0.134 0.866 15 C -0.138 4.138 16 N -0.485 5.485 17 Si 0.693 3.307 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.181 1.181 21 C -0.009 4.009 22 C -0.162 4.162 23 C 0.311 3.689 24 O -0.399 6.399 25 O -0.279 6.279 26 C -0.059 4.059 27 C -0.128 4.128 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.186 0.814 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.125 0.875 42 H 0.135 0.865 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.079 0.921 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.015 -8.870 -0.522 10.203 hybrid contribution 0.594 0.754 0.439 1.056 sum -4.421 -8.116 -0.083 9.242 Atomic orbital electron populations 1.21688 0.94493 1.02296 1.02167 1.21478 0.95799 0.95239 1.03643 1.22771 0.79282 0.98283 1.01198 1.86019 1.20552 1.27349 1.89504 1.18669 0.91883 0.83811 0.99789 1.21259 0.99295 0.92693 1.08399 1.20963 0.94999 0.96476 0.99676 1.22372 0.92907 1.00845 0.95511 1.19631 0.93575 0.92754 1.00863 1.18256 0.87097 0.83403 0.79838 1.90661 1.66652 1.42512 1.47263 1.43523 1.03720 1.21556 1.48685 1.19243 1.10549 0.84623 1.33634 0.86628 1.25343 0.96905 0.95629 0.95937 1.69699 1.42517 1.03106 1.33133 0.87047 0.81325 0.78674 0.83626 1.19407 1.21135 1.18123 1.21434 0.82821 1.00554 0.96125 1.21791 0.86065 1.05001 1.03303 1.23991 0.92044 0.74286 0.78604 1.90650 1.69122 1.41307 1.38772 1.86538 1.22442 1.71933 1.46949 1.23206 0.77075 1.02620 1.03024 1.20352 0.90935 0.97969 1.03502 0.92395 0.91914 0.92428 0.90890 0.90916 0.92349 0.92274 0.86273 0.85895 0.81397 0.91143 0.90528 0.89907 0.87469 0.86546 0.92089 0.88397 0.92063 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -1.12 6.30 -26.73 -0.17 -1.28 16 3 C 0.06 0.67 4.74 37.15 0.18 0.85 16 4 O -0.32 -4.91 10.13 -19.45 -0.20 -5.10 16 5 C 0.10 1.75 6.68 -39.28 -0.26 1.49 16 6 C -0.20 -3.06 9.03 -39.34 -0.36 -3.42 16 7 C -0.10 -1.72 10.03 -39.66 -0.40 -2.11 16 8 C -0.10 -1.93 7.75 -39.15 -0.30 -2.24 16 9 C -0.07 -1.37 5.52 -104.98 -0.58 -1.95 16 10 C 0.52 12.19 7.40 -12.38 -0.09 12.10 16 11 O -0.59 -14.67 16.32 5.29 0.09 -14.58 16 12 N -0.46 -10.53 2.12 -115.92 -0.25 -10.78 16 13 C -0.35 -8.47 6.57 -15.00 -0.10 -8.57 16 14 H 0.12 2.89 6.41 -52.49 -0.34 2.56 16 15 C 0.07 1.74 5.31 -17.45 -0.09 1.65 16 16 N -0.85 -21.77 13.95 55.50 0.77 -21.00 16 17 Si 0.87 19.98 24.92 -169.99 -4.24 15.74 16 18 H -0.27 -6.22 6.73 56.52 0.38 -5.84 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 21 C 0.11 2.51 3.49 -4.04 -0.01 2.49 16 22 C -0.12 -2.30 6.14 -27.88 -0.17 -2.47 16 23 C 0.47 8.52 7.96 36.01 0.29 8.80 16 24 O -0.51 -10.53 15.73 -18.76 -0.30 -10.82 16 25 O -0.36 -5.64 10.57 -39.26 -0.41 -6.05 16 26 C 0.03 0.41 10.56 101.05 1.07 1.47 16 27 C -0.11 -2.08 9.54 -39.00 -0.37 -2.45 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 34 H 0.06 0.61 7.64 -51.93 -0.40 0.22 16 35 H 0.12 1.49 6.28 -52.49 -0.33 1.16 16 36 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.17 3.60 5.39 -52.49 -0.28 3.32 16 38 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 39 H 0.08 1.77 3.36 -51.93 -0.17 1.59 16 40 H 0.08 1.89 7.33 -51.93 -0.38 1.51 16 41 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 42 H 0.12 2.10 8.14 -51.93 -0.42 1.68 16 43 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 46 H 0.13 2.51 7.96 -52.49 -0.42 2.10 16 LS Contribution 381.44 15.07 5.75 5.75 Total: -1.00 -29.64 381.44 -6.31 -35.95 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.52 Total: 7.18 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.01 Total: 3.71 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.53 Total: -31.78 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -0.82 Total: -36.56 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.24 Total: 15.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.64 -6.31 -35.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.862 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds