Wall clock time and date at job start Tue Mar 31 2020 19:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47308 * 2 1 4 4 O 1.42902 * 109.47402 * 179.97438 * 3 2 1 5 5 C 1.35907 * 116.99977 * 179.97438 * 4 3 2 6 6 C 1.38863 * 119.98438 * 359.73380 * 5 4 3 7 7 C 1.38265 * 120.25370 * 179.72042 * 6 5 4 8 8 C 1.37990 * 120.20758 * 0.55091 * 7 6 5 9 9 C 1.39638 * 119.95923 * 359.72454 * 8 7 6 10 10 C 1.47743 * 120.12051 * 180.02562 * 9 8 7 11 11 O 1.21591 * 119.99419 * 147.74791 * 10 9 8 12 12 N 1.34774 * 120.00300 * 327.75102 * 10 9 8 13 13 C 1.36874 * 119.99769 * 3.58725 * 12 10 9 14 14 H 1.08000 * 120.00283 * 319.14098 * 13 12 10 15 15 C 1.39050 * 119.99512 * 139.14060 * 13 12 10 16 16 N 1.31369 * 119.99722 * 161.69256 * 15 13 12 17 17 Si 1.86801 * 120.00310 * 341.68637 * 15 13 12 18 18 H 1.48500 * 109.46862 * 95.26623 * 17 15 13 19 19 H 1.48497 * 109.47142 * 215.26619 * 17 15 13 20 20 H 1.48500 * 109.46981 * 335.27089 * 17 15 13 21 21 C 1.46497 * 120.00024 * 183.59206 * 12 10 9 22 22 C 1.52997 * 109.47198 * 89.99864 * 21 12 10 23 23 C 1.50701 * 109.47135 * 179.97438 * 22 21 12 24 24 O 1.20833 * 120.00099 * 359.97438 * 23 22 21 25 25 O 1.34233 * 120.00265 * 179.97438 * 23 22 21 26 26 C 1.45204 * 116.99932 * 180.02562 * 25 23 22 27 27 C 1.38433 * 119.97596 * 180.02562 * 5 4 3 28 28 H 1.09002 * 109.47315 * 59.99686 * 1 2 3 29 29 H 1.08998 * 109.47146 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46901 * 299.99595 * 1 2 3 31 31 H 1.09004 * 109.46901 * 240.00405 * 2 1 3 32 32 H 1.09002 * 109.47315 * 120.00314 * 2 1 3 33 33 H 1.09004 * 109.46809 * 60.00348 * 3 2 1 34 34 H 1.08992 * 109.47325 * 300.00435 * 3 2 1 35 35 H 1.07997 * 119.87636 * 359.97438 * 6 5 4 36 36 H 1.07992 * 119.89716 * 180.27486 * 7 6 5 37 37 H 1.07995 * 120.01906 * 179.74679 * 8 7 6 38 38 H 0.96998 * 120.00002 * 180.02562 * 16 15 13 39 39 H 1.09006 * 109.46998 * 210.00122 * 21 12 10 40 40 H 1.09005 * 109.46913 * 329.99789 * 21 12 10 41 41 H 1.08993 * 109.47057 * 299.99475 * 22 21 12 42 42 H 1.08995 * 109.47136 * 60.00207 * 22 21 12 43 43 H 1.08995 * 109.47053 * 60.00215 * 26 25 23 44 44 H 1.08998 * 109.46643 * 179.97438 * 26 25 23 45 45 H 1.08995 * 109.46804 * 299.99783 * 26 25 23 46 46 H 1.07998 * 120.11000 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0860 2.6534 0.0001 6 6 3.3294 3.8178 -0.0065 7 6 3.9513 5.0527 -0.0011 8 6 5.3286 5.1364 -0.0007 9 6 6.0981 3.9712 0.0002 10 6 7.5730 4.0567 0.0012 11 8 8.2310 3.2030 0.5639 12 7 8.1891 5.0810 -0.6214 13 6 7.4481 6.0807 -1.1914 14 1 6.5464 5.8415 -1.7356 15 6 7.8562 7.4044 -1.0697 16 7 7.3807 8.3161 -1.8872 17 14 9.0805 7.8862 0.2564 18 1 10.4514 7.8929 -0.3144 19 1 8.7500 9.2412 0.7664 20 1 9.0133 6.9076 1.3713 21 6 9.6520 5.1243 -0.6882 22 6 10.1262 4.4057 -1.9529 23 6 11.6310 4.4509 -2.0219 24 8 12.2596 5.0017 -1.1493 25 8 12.2731 3.8791 -3.0528 26 6 13.7228 3.9608 -3.0534 27 6 5.4685 2.7253 0.0001 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9562 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 2.2511 3.7586 -0.0116 36 1 3.3572 5.9545 -0.0018 37 1 5.8111 6.1026 -0.0007 38 1 7.6657 9.2394 -1.8026 39 1 9.9839 6.1623 -0.7138 40 1 10.0705 4.6305 0.1889 41 1 9.7944 3.3679 -1.9272 42 1 9.7078 4.8995 -2.8299 43 1 14.1144 3.4759 -2.1593 44 1 14.1144 3.4601 -3.9389 45 1 14.0277 5.0071 -3.0625 46 1 6.0581 1.8205 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:20 Heat of formation + Delta-G solvation = -140.092077 kcal Electronic energy + Delta-G solvation = -28795.901964 eV Core-core repulsion = 24651.080631 eV Total energy + Delta-G solvation = -4144.821334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.76224 -41.34289 -40.46764 -38.18112 -37.71811 -37.07415 -34.78253 -34.28148 -33.00121 -31.85714 -30.72405 -28.74536 -27.51221 -26.99041 -26.08465 -23.99168 -23.21953 -22.30849 -21.92772 -21.06615 -19.78952 -18.96533 -18.34736 -17.92461 -17.78676 -17.47412 -17.17350 -16.99324 -16.91549 -16.41656 -15.80144 -15.76895 -15.28519 -15.00060 -14.85572 -14.60732 -14.51531 -14.40658 -14.13980 -14.06494 -13.66848 -13.48263 -13.28419 -13.09108 -12.98358 -12.95274 -12.80101 -12.47705 -12.27759 -12.18189 -11.97594 -11.89599 -11.78437 -11.70808 -11.68817 -11.44755 -11.19676 -10.63776 -9.94149 -9.80318 -9.08239 -8.53214 -6.17327 0.03761 0.57571 1.03027 1.18111 1.29844 1.39153 1.52715 1.92179 2.13639 2.17184 2.61945 2.79175 3.05746 3.65851 3.79362 3.89137 3.92526 4.00443 4.02537 4.08347 4.23580 4.27607 4.29010 4.35462 4.37180 4.39342 4.52933 4.58762 4.60599 4.62245 4.65746 4.75662 4.80584 4.87377 5.02530 5.15684 5.22458 5.23475 5.31028 5.33987 5.39493 5.59067 5.67516 5.84500 6.02665 6.19297 6.52542 6.59229 6.87119 7.27032 7.62165 8.56710 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013015 B = 0.003068 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.780443 B = 9123.588297 C =10648.321797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.049 3.951 4 O -0.332 6.332 5 C 0.109 3.891 6 C -0.180 4.180 7 C -0.094 4.094 8 C -0.113 4.113 9 C -0.090 4.090 10 C 0.519 3.481 11 O -0.612 6.612 12 N -0.461 5.461 13 C -0.338 4.338 14 H 0.106 0.894 15 C 0.051 3.949 16 N -0.877 5.877 17 Si 0.902 3.098 18 H -0.272 1.272 19 H -0.276 1.276 20 H -0.274 1.274 21 C 0.112 3.888 22 C -0.116 4.116 23 C 0.475 3.525 24 O -0.539 6.539 25 O -0.359 6.359 26 C 0.026 3.974 27 C -0.123 4.123 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.282 0.718 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.062 0.938 44 H 0.138 0.862 45 H 0.061 0.939 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 -9.348 -1.565 12.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.026 4.026 4 O -0.247 6.247 5 C 0.064 3.936 6 C -0.199 4.199 7 C -0.112 4.112 8 C -0.132 4.132 9 C -0.093 4.093 10 C 0.310 3.690 11 O -0.498 6.498 12 N -0.181 5.181 13 C -0.465 4.465 14 H 0.123 0.877 15 C -0.156 4.156 16 N -0.513 5.513 17 Si 0.729 3.271 18 H -0.198 1.198 19 H -0.202 1.202 20 H -0.199 1.199 21 C -0.011 4.011 22 C -0.154 4.154 23 C 0.319 3.681 24 O -0.430 6.430 25 O -0.275 6.275 26 C -0.067 4.067 27 C -0.143 4.143 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.178 0.822 36 H 0.170 0.830 37 H 0.164 0.836 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.081 0.919 44 H 0.156 0.844 45 H 0.080 0.920 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.942 -9.565 -1.135 11.873 hybrid contribution 1.118 0.816 0.619 1.516 sum -5.824 -8.749 -0.516 10.523 Atomic orbital electron populations 1.21675 0.92535 1.03203 1.02797 1.21509 0.97330 0.93850 1.03299 1.23173 0.76854 1.00082 1.02475 1.86030 1.23130 1.26507 1.89063 1.18680 0.91206 0.85158 0.98518 1.21630 1.01179 0.91311 1.05752 1.21249 0.93714 0.98297 0.97949 1.22165 0.94453 0.99268 0.97288 1.19513 0.92198 0.94062 1.03516 1.18733 0.88354 0.82826 0.79065 1.90622 1.67602 1.43304 1.48292 1.43599 1.04135 1.21515 1.48807 1.19080 1.10121 0.84698 1.32608 0.87702 1.25561 0.97721 0.95683 0.96639 1.69712 1.43848 1.03522 1.34193 0.86512 0.80266 0.78306 0.82011 1.19824 1.20225 1.19866 1.21376 0.82290 1.00139 0.97314 1.21609 0.87043 1.05056 1.01716 1.23726 0.91743 0.73889 0.78739 1.90639 1.69612 1.42749 1.39972 1.86510 1.24748 1.70936 1.45347 1.23618 0.74564 1.03387 1.05159 1.20305 0.92357 0.96906 1.04702 0.91777 0.90959 0.91764 0.91309 0.91322 0.90913 0.90923 0.82232 0.82957 0.83575 0.90723 0.91619 0.91309 0.86634 0.85818 0.91879 0.84370 0.92023 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.91 71.98 0.71 -0.81 16 2 C -0.12 -1.90 6.30 30.59 0.19 -1.71 16 3 C 0.05 0.93 4.74 71.98 0.34 1.27 16 4 O -0.33 -9.56 10.13 -92.51 -0.94 -10.49 16 5 C 0.11 3.54 6.68 22.47 0.15 3.69 16 6 C -0.18 -5.00 9.03 22.43 0.20 -4.80 16 7 C -0.09 -2.93 10.03 22.22 0.22 -2.70 16 8 C -0.11 -4.47 7.75 22.55 0.17 -4.29 16 9 C -0.09 -3.86 5.52 -20.10 -0.11 -3.97 16 10 C 0.52 25.01 7.40 86.76 0.64 25.65 16 11 O -0.61 -31.80 16.32 -4.00 -0.07 -31.86 16 12 N -0.46 -21.99 2.12 -638.92 -1.36 -23.35 16 13 C -0.34 -16.54 6.57 84.10 0.55 -15.99 16 14 H 0.11 5.36 6.41 -2.91 -0.02 5.34 16 15 C 0.05 2.52 5.31 84.96 0.45 2.97 16 16 N -0.88 -45.13 13.95 21.68 0.30 -44.82 16 17 Si 0.90 41.89 24.92 68.60 1.71 43.60 16 18 H -0.27 -12.71 6.73 99.48 0.67 -12.04 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 21 C 0.11 5.08 3.49 86.38 0.30 5.38 16 22 C -0.12 -4.38 6.14 29.85 0.18 -4.20 16 23 C 0.47 17.28 7.96 71.24 0.57 17.84 16 24 O -0.54 -22.46 15.73 21.94 0.35 -22.12 16 25 O -0.36 -10.77 10.57 -51.44 -0.54 -11.32 16 26 C 0.03 0.55 10.56 113.37 1.20 1.75 16 27 C -0.12 -4.78 9.54 22.64 0.22 -4.56 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.60 8.14 -2.38 -0.02 0.59 16 31 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.21 7.67 -2.38 -0.02 1.19 16 34 H 0.07 1.22 7.64 -2.39 -0.02 1.20 16 35 H 0.16 3.15 6.28 -2.91 -0.02 3.13 16 36 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 37 H 0.15 6.40 5.39 -2.91 -0.02 6.39 16 38 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 39 H 0.07 3.11 3.36 -2.38 -0.01 3.10 16 40 H 0.07 3.27 7.33 -2.38 -0.02 3.26 16 41 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 42 H 0.12 4.49 8.14 -2.39 -0.02 4.47 16 43 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 44 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 46 H 0.12 4.80 7.96 -2.91 -0.02 4.78 16 Total: -1.00 -65.30 381.44 6.41 -58.89 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.96 Total: 25.94 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 6.00 Total: 15.53 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -1.05 Total: -68.17 kcal Atomic # 8 Polarization: -74.59 SS G_CDS: -1.20 Total: -75.79 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.71 Total: 43.60 kcal Total: -65.30 6.41 -58.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.202 kcal (2) G-P(sol) polarization free energy of solvation -65.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds