Wall clock time and date at job start Tue Mar 31 2020 19:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.60754 * 2 1 4 4 C 1.53373 * 109.60619 * 239.49334 * 2 1 3 5 5 N 1.46967 * 108.63098 * 190.82702 * 4 2 1 6 6 C 1.34777 * 120.59302 * 235.20434 * 5 4 2 7 7 O 1.21635 * 119.99737 * 186.94725 * 6 5 4 8 8 C 1.47264 * 120.00201 * 6.94727 * 6 5 4 9 9 C 1.35211 * 123.13813 * 188.30509 * 8 6 5 10 10 S 1.70947 * 108.82220 * 179.97438 * 9 8 6 11 11 C 1.70765 * 91.13094 * 359.97438 * 10 9 8 12 12 C 1.50703 * 124.72297 * 180.02562 * 11 10 9 13 13 C 1.53003 * 117.49412 * 8.59479 * 12 11 10 14 14 C 1.52997 * 117.49593 * 299.97676 * 12 11 10 15 15 N 1.28655 * 110.56142 * 359.76444 * 11 10 9 16 16 C 1.46968 * 118.81437 * 55.22937 * 5 4 2 17 17 C 1.53372 * 108.63147 * 304.77220 * 16 5 4 18 18 H 1.08996 * 109.75232 * 169.25094 * 17 16 5 19 19 C 1.53008 * 109.60826 * 289.67949 * 17 16 5 20 20 N 1.46955 * 109.61366 * 120.34586 * 2 1 3 21 21 C 1.36939 * 120.59306 * 354.94904 * 20 2 1 22 22 H 1.07996 * 120.00056 * 28.41492 * 21 20 2 23 23 C 1.38811 * 120.00077 * 208.41380 * 21 20 2 24 24 N 1.31624 * 120.00186 * 17.17372 * 23 21 20 25 25 Si 1.86802 * 120.00179 * 197.18047 * 23 21 20 26 26 H 1.48505 * 109.46939 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47672 * 119.99516 * 25 23 21 28 28 H 1.48503 * 109.46968 * 239.99912 * 25 23 21 29 29 H 1.08995 * 109.47017 * 299.65420 * 1 2 3 30 30 H 1.08998 * 109.46782 * 179.65230 * 1 2 3 31 31 H 1.08996 * 109.47025 * 59.65884 * 1 2 3 32 32 H 1.08996 * 109.61290 * 310.56723 * 4 2 1 33 33 H 1.08999 * 109.61135 * 71.08465 * 4 2 1 34 34 H 1.07994 * 125.59066 * 359.92381 * 9 8 6 35 35 H 1.08996 * 115.55353 * 154.30499 * 12 11 10 36 36 H 1.08995 * 117.50278 * 0.02562 * 13 12 11 37 37 H 1.09008 * 117.49400 * 145.02301 * 13 12 11 38 38 H 1.09004 * 117.49719 * 214.97811 * 14 12 11 39 39 H 1.09005 * 117.50275 * 359.97438 * 14 12 11 40 40 H 1.08994 * 109.60950 * 185.02666 * 16 5 4 41 41 H 1.09002 * 109.60837 * 64.51305 * 16 5 4 42 42 H 1.09008 * 109.46930 * 179.14718 * 19 17 16 43 43 H 1.08996 * 109.46737 * 299.14355 * 19 17 16 44 44 H 1.09000 * 109.47014 * 59.14803 * 19 17 16 45 45 H 0.96994 * 120.00084 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7334 -1.2448 5 7 3.4908 -0.9504 -1.0976 6 6 4.3491 -0.5160 -2.0416 7 8 5.5275 -0.8101 -1.9737 8 6 3.8604 0.3144 -3.1552 9 6 4.6251 0.6485 -4.2191 10 16 3.6981 1.6129 -5.2835 11 6 2.3439 1.5139 -4.2479 12 6 1.0106 2.1640 -4.5139 13 6 0.7956 2.7977 -5.8898 14 6 0.9837 3.6869 -4.6591 15 7 2.6185 0.8026 -3.2117 16 6 3.9842 -1.6498 0.0971 17 6 3.4694 -0.9164 1.3418 18 1 3.6604 -1.5190 2.2297 19 6 4.1802 0.4322 1.4738 20 7 2.0233 -0.6994 1.1946 21 6 1.1512 -1.1406 2.1538 22 1 0.1399 -1.4058 1.8831 23 6 1.5671 -1.2471 3.4738 24 7 2.6553 -0.6237 3.8734 25 14 0.5824 -2.2753 4.6833 26 1 -0.5893 -2.8682 3.9898 27 1 1.4399 -3.3608 5.2233 28 1 0.1134 -1.4139 5.7983 29 1 -0.3633 0.5084 0.8930 30 1 -0.3633 -1.0276 -0.0062 31 1 -0.3633 0.5191 -0.8869 32 1 1.5385 -1.6941 -1.3388 33 1 1.8539 -0.1282 -2.1310 34 1 5.6532 0.3550 -4.3711 35 1 0.1526 1.6886 -4.0387 36 1 1.6182 2.7439 -6.6028 37 1 -0.2042 2.7389 -6.3202 38 1 0.1077 4.2132 -4.2798 39 1 1.9303 4.2186 -4.5619 40 1 5.0741 -1.6498 0.0970 41 1 3.6159 -2.6757 0.0985 42 1 3.8018 0.9580 2.3505 43 1 5.2523 0.2686 1.5829 44 1 3.9926 1.0305 0.5823 45 1 2.9456 -0.6978 4.7959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880460604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:02 Heat of formation + Delta-G solvation = 85.400115 kcal Electronic energy + Delta-G solvation = -27928.386406 eV Core-core repulsion = 24268.388770 eV Total energy + Delta-G solvation = -3659.997636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.69076 -38.88453 -37.49379 -37.02379 -33.92510 -32.58037 -31.24150 -30.57735 -27.84342 -26.95853 -25.90392 -25.36919 -23.71590 -22.97519 -22.80631 -20.83328 -20.66782 -19.50846 -18.69867 -18.08874 -16.64629 -16.14328 -15.97715 -15.58240 -15.01288 -14.92626 -14.81842 -14.20182 -13.88956 -13.84052 -13.43493 -13.35931 -13.10793 -12.60725 -12.52900 -12.22496 -11.91202 -11.84267 -11.66165 -11.46244 -11.18275 -11.08143 -10.97446 -10.93151 -10.74380 -10.54302 -10.50310 -10.07103 -9.97150 -9.79875 -9.74820 -9.66688 -9.60273 -8.92534 -8.80308 -8.43514 -8.02964 -6.54829 -5.74095 -3.17364 0.41539 1.05289 1.46640 1.94852 3.37201 3.38456 3.46070 3.47278 3.48522 3.65068 3.78539 4.39150 4.51211 4.54815 4.64218 4.91216 5.06351 5.21794 5.24687 5.35097 5.42582 5.46160 5.59701 5.66484 5.72949 5.88274 6.02085 6.12901 6.25124 6.33776 6.35880 6.48461 6.58297 6.65495 6.79053 6.93856 6.96951 7.02897 7.14686 7.24905 7.38303 7.65256 7.72769 7.86766 8.03057 8.48807 8.56457 9.25117 9.88194 10.45726 11.32656 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.003734 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.297137 B = 7496.814927 C = 8610.733019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.162 3.838 3 H 0.029 0.971 4 C 0.047 3.953 5 N -0.569 5.569 6 C 0.580 3.420 7 O -0.553 6.553 8 C 0.029 3.971 9 C -0.232 4.232 10 S 0.196 5.804 11 C 0.055 3.945 12 C -0.086 4.086 13 C -0.170 4.170 14 C -0.158 4.158 15 N -0.424 5.424 16 C 0.091 3.909 17 C 0.180 3.820 18 H 0.108 0.892 19 C -0.138 4.138 20 N -0.584 5.584 21 C -0.248 4.248 22 H 0.071 0.929 23 C 0.002 3.998 24 N -0.898 5.898 25 Si 0.898 3.102 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.292 1.292 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.146 0.854 34 H 0.189 0.811 35 H 0.137 0.863 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.027 0.973 44 H 0.020 0.980 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.937 6.967 -20.791 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 H 0.046 0.954 4 C -0.078 4.078 5 N -0.297 5.297 6 C 0.365 3.635 7 O -0.433 6.433 8 C -0.105 4.105 9 C -0.374 4.374 10 S 0.454 5.546 11 C -0.223 4.223 12 C -0.107 4.107 13 C -0.208 4.208 14 C -0.197 4.197 15 N -0.139 5.139 16 C -0.033 4.033 17 C 0.072 3.928 18 H 0.125 0.875 19 C -0.197 4.197 20 N -0.306 5.306 21 C -0.377 4.377 22 H 0.089 0.911 23 C -0.196 4.196 24 N -0.543 5.543 25 Si 0.729 3.271 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.219 1.219 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.162 0.838 34 H 0.206 0.794 35 H 0.155 0.845 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.040 0.960 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.477 7.161 -21.092 22.323 hybrid contribution -0.082 -1.178 1.727 2.092 sum -1.559 5.983 -19.365 20.328 Atomic orbital electron populations 1.21727 0.95632 1.01301 1.00355 1.20678 0.92915 0.93941 0.86963 0.95381 1.23753 0.78420 1.01648 1.03992 1.47846 1.07876 1.54241 1.19763 1.17127 0.85501 0.79822 0.81091 1.90756 1.16383 1.59529 1.76618 1.20637 0.88958 1.03104 0.97834 1.26544 1.06952 1.05273 0.98627 1.82600 1.03363 1.45304 1.23355 1.26541 1.00202 1.00926 0.94596 1.20432 0.92637 0.95663 1.01983 1.23155 1.04025 1.03302 0.90322 1.23154 1.04454 0.91173 1.00882 1.66690 1.16162 1.10426 1.20589 1.22598 0.99402 0.95741 0.85540 1.20738 0.83125 0.94861 0.94056 0.87452 1.21978 0.97518 0.99498 1.00725 1.44222 1.01795 1.64745 1.19877 1.19232 0.95331 1.36581 0.86594 0.91123 1.25035 0.98153 0.99719 0.96723 1.70012 1.25479 1.42830 1.15978 0.86290 0.79497 0.80064 0.81296 1.20397 1.21710 1.21922 0.91907 0.92856 0.94138 0.93046 0.83811 0.79422 0.84503 0.88409 0.87161 0.87251 0.88193 0.90276 0.92169 0.90665 0.95392 0.96038 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 7.93 37.16 0.29 -2.19 16 2 C 0.16 3.44 3.23 -67.49 -0.22 3.23 16 3 H 0.03 0.66 7.41 -51.93 -0.38 0.27 16 4 C 0.05 0.89 5.72 -3.59 -0.02 0.87 16 5 N -0.57 -11.57 2.59 -173.81 -0.45 -12.02 16 6 C 0.58 11.48 7.65 -12.59 -0.10 11.38 16 7 O -0.55 -12.03 16.17 5.25 0.08 -11.94 16 8 C 0.03 0.47 6.51 -84.53 -0.55 -0.09 16 9 C -0.23 -3.01 10.62 29.65 0.32 -2.69 16 10 S 0.20 1.82 21.65 -107.50 -2.33 -0.51 16 11 C 0.06 0.63 6.99 -13.61 -0.10 0.53 16 12 C -0.09 -0.73 6.33 -91.77 -0.58 -1.31 16 13 C -0.17 -0.98 10.01 -26.73 -0.27 -1.24 16 14 C -0.16 -1.06 10.23 -26.73 -0.27 -1.33 16 15 N -0.42 -6.31 6.73 -8.51 -0.06 -6.37 16 16 C 0.09 1.96 5.95 -3.59 -0.02 1.94 16 17 C 0.18 4.32 2.35 -67.48 -0.16 4.16 16 18 H 0.11 2.88 5.98 -51.93 -0.31 2.57 16 19 C -0.14 -3.29 8.94 37.16 0.33 -2.96 16 20 N -0.58 -14.32 2.69 -157.02 -0.42 -14.74 16 21 C -0.25 -6.54 8.59 -15.06 -0.13 -6.67 16 22 H 0.07 1.83 6.21 -52.49 -0.33 1.50 16 23 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 24 N -0.90 -25.24 10.14 55.49 0.56 -24.68 16 25 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H 0.06 1.27 7.67 -51.93 -0.40 0.87 16 30 H 0.05 1.00 7.38 -51.93 -0.38 0.62 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 1.00 8.12 -51.93 -0.42 0.57 16 33 H 0.15 2.52 3.58 -89.43 -0.32 2.20 16 34 H 0.19 2.23 8.04 -52.49 -0.42 1.81 16 35 H 0.14 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.10 0.51 7.21 -51.93 -0.37 0.13 16 37 H 0.11 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.70 7.01 -51.93 -0.36 1.34 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.07 1.97 7.21 -51.92 -0.37 1.60 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.02 0.49 7.02 -51.93 -0.36 0.13 16 45 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -31.26 365.01 -10.23 -41.49 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.54 Total: 3.27 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.56 Total: 3.60 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.37 Total: -57.81 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.33 Total: -0.51 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.26 -10.23 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880460604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.890 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds