Wall clock time and date at job start Tue Mar 31 2020 19:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.60754 * 2 1 4 4 C 1.53373 * 109.60619 * 239.49334 * 2 1 3 5 5 N 1.46967 * 108.63098 * 190.82702 * 4 2 1 6 6 C 1.34777 * 120.59302 * 235.20434 * 5 4 2 7 7 O 1.21635 * 119.99737 * 186.94725 * 6 5 4 8 8 C 1.47264 * 120.00201 * 6.94727 * 6 5 4 9 9 C 1.35211 * 123.13813 * 188.30509 * 8 6 5 10 10 S 1.70947 * 108.82220 * 179.97438 * 9 8 6 11 11 C 1.70765 * 91.13094 * 359.97438 * 10 9 8 12 12 C 1.50703 * 124.72297 * 180.02562 * 11 10 9 13 13 C 1.53003 * 117.49412 * 8.59479 * 12 11 10 14 14 C 1.52997 * 117.49593 * 299.97676 * 12 11 10 15 15 N 1.28655 * 110.56142 * 359.76444 * 11 10 9 16 16 C 1.46968 * 118.81437 * 55.22937 * 5 4 2 17 17 C 1.53372 * 108.63147 * 304.77220 * 16 5 4 18 18 H 1.08996 * 109.75232 * 169.25094 * 17 16 5 19 19 C 1.53008 * 109.60826 * 289.67949 * 17 16 5 20 20 N 1.46955 * 109.61366 * 120.34586 * 2 1 3 21 21 C 1.36939 * 120.59306 * 354.94904 * 20 2 1 22 22 H 1.07996 * 120.00056 * 28.41492 * 21 20 2 23 23 C 1.38811 * 120.00077 * 208.41380 * 21 20 2 24 24 N 1.31624 * 120.00186 * 17.17372 * 23 21 20 25 25 Si 1.86802 * 120.00179 * 197.18047 * 23 21 20 26 26 H 1.48505 * 109.46939 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47672 * 119.99516 * 25 23 21 28 28 H 1.48503 * 109.46968 * 239.99912 * 25 23 21 29 29 H 1.08995 * 109.47017 * 299.65420 * 1 2 3 30 30 H 1.08998 * 109.46782 * 179.65230 * 1 2 3 31 31 H 1.08996 * 109.47025 * 59.65884 * 1 2 3 32 32 H 1.08996 * 109.61290 * 310.56723 * 4 2 1 33 33 H 1.08999 * 109.61135 * 71.08465 * 4 2 1 34 34 H 1.07994 * 125.59066 * 359.92381 * 9 8 6 35 35 H 1.08996 * 115.55353 * 154.30499 * 12 11 10 36 36 H 1.08995 * 117.50278 * 0.02562 * 13 12 11 37 37 H 1.09008 * 117.49400 * 145.02301 * 13 12 11 38 38 H 1.09004 * 117.49719 * 214.97811 * 14 12 11 39 39 H 1.09005 * 117.50275 * 359.97438 * 14 12 11 40 40 H 1.08994 * 109.60950 * 185.02666 * 16 5 4 41 41 H 1.09002 * 109.60837 * 64.51305 * 16 5 4 42 42 H 1.09008 * 109.46930 * 179.14718 * 19 17 16 43 43 H 1.08996 * 109.46737 * 299.14355 * 19 17 16 44 44 H 1.09000 * 109.47014 * 59.14803 * 19 17 16 45 45 H 0.96994 * 120.00084 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7334 -1.2448 5 7 3.4908 -0.9504 -1.0976 6 6 4.3491 -0.5160 -2.0416 7 8 5.5275 -0.8101 -1.9737 8 6 3.8604 0.3144 -3.1552 9 6 4.6251 0.6485 -4.2191 10 16 3.6981 1.6129 -5.2835 11 6 2.3439 1.5139 -4.2479 12 6 1.0106 2.1640 -4.5139 13 6 0.7956 2.7977 -5.8898 14 6 0.9837 3.6869 -4.6591 15 7 2.6185 0.8026 -3.2117 16 6 3.9842 -1.6498 0.0971 17 6 3.4694 -0.9164 1.3418 18 1 3.6604 -1.5190 2.2297 19 6 4.1802 0.4322 1.4738 20 7 2.0233 -0.6994 1.1946 21 6 1.1512 -1.1406 2.1538 22 1 0.1399 -1.4058 1.8831 23 6 1.5671 -1.2471 3.4738 24 7 2.6553 -0.6237 3.8734 25 14 0.5824 -2.2753 4.6833 26 1 -0.5893 -2.8682 3.9898 27 1 1.4399 -3.3608 5.2233 28 1 0.1134 -1.4139 5.7983 29 1 -0.3633 0.5084 0.8930 30 1 -0.3633 -1.0276 -0.0062 31 1 -0.3633 0.5191 -0.8869 32 1 1.5385 -1.6941 -1.3388 33 1 1.8539 -0.1282 -2.1310 34 1 5.6532 0.3550 -4.3711 35 1 0.1526 1.6886 -4.0387 36 1 1.6182 2.7439 -6.6028 37 1 -0.2042 2.7389 -6.3202 38 1 0.1077 4.2132 -4.2798 39 1 1.9303 4.2186 -4.5619 40 1 5.0741 -1.6498 0.0970 41 1 3.6159 -2.6757 0.0985 42 1 3.8018 0.9580 2.3505 43 1 5.2523 0.2686 1.5829 44 1 3.9926 1.0305 0.5823 45 1 2.9456 -0.6978 4.7959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880460604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:01 Heat of formation + Delta-G solvation = 67.668442 kcal Electronic energy + Delta-G solvation = -27929.155309 eV Core-core repulsion = 24268.388770 eV Total energy + Delta-G solvation = -3660.766539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.93283 -40.21546 -38.92801 -37.92021 -35.69328 -34.33590 -33.16993 -31.61295 -29.74844 -28.42712 -27.44596 -26.61692 -25.55762 -24.22905 -23.26185 -22.44538 -21.69295 -20.93584 -20.23224 -19.41156 -17.93174 -17.55181 -17.33682 -16.92962 -16.79114 -16.31308 -15.93193 -15.70723 -15.30212 -15.15663 -15.10053 -14.77151 -14.53552 -14.23275 -13.63779 -13.59727 -13.49200 -13.21656 -12.90538 -12.83697 -12.73064 -12.51342 -12.33820 -12.32348 -12.30243 -11.98752 -11.83750 -11.79884 -11.55669 -11.50756 -11.41850 -11.20206 -10.62197 -10.49481 -10.11613 -9.89090 -9.61386 -8.52217 -7.78694 -5.24773 -0.54684 0.19690 0.52582 0.80362 1.47383 1.50728 1.59394 2.05075 2.20833 2.54541 2.71903 3.03781 3.34376 3.56453 3.57200 3.84480 3.98302 4.07609 4.13061 4.20569 4.24456 4.39874 4.44392 4.51577 4.57580 4.60552 4.66917 4.76111 4.81405 4.86326 4.90841 5.04589 5.05178 5.12068 5.14980 5.20247 5.26105 5.40676 5.51626 5.56353 5.71312 5.74509 5.81441 6.32823 6.46014 6.53539 7.04591 7.20666 7.90317 8.44807 9.25870 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.003734 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.297137 B = 7496.814927 C = 8610.733019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.160 3.840 3 H 0.007 0.993 4 C 0.056 3.944 5 N -0.578 5.578 6 C 0.576 3.424 7 O -0.582 6.582 8 C -0.006 4.006 9 C -0.241 4.241 10 S 0.307 5.693 11 C 0.046 3.954 12 C -0.112 4.112 13 C -0.147 4.147 14 C -0.157 4.157 15 N -0.459 5.459 16 C 0.101 3.899 17 C 0.182 3.818 18 H 0.078 0.922 19 C -0.119 4.119 20 N -0.597 5.597 21 C -0.250 4.250 22 H 0.076 0.924 23 C -0.048 4.048 24 N -0.926 5.926 25 Si 0.959 3.041 26 H -0.268 1.268 27 H -0.296 1.296 28 H -0.297 1.297 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.171 0.829 34 H 0.194 0.806 35 H 0.135 0.865 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.035 0.965 44 H 0.018 0.982 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 8.040 -24.267 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.053 3.947 3 H 0.025 0.975 4 C -0.068 4.068 5 N -0.306 5.306 6 C 0.363 3.637 7 O -0.464 6.464 8 C -0.140 4.140 9 C -0.383 4.383 10 S 0.566 5.434 11 C -0.231 4.231 12 C -0.134 4.134 13 C -0.185 4.185 14 C -0.196 4.196 15 N -0.174 5.174 16 C -0.023 4.023 17 C 0.074 3.926 18 H 0.095 0.905 19 C -0.178 4.178 20 N -0.320 5.320 21 C -0.380 4.380 22 H 0.094 0.906 23 C -0.243 4.243 24 N -0.572 5.572 25 Si 0.789 3.211 26 H -0.192 1.192 27 H -0.223 1.223 28 H -0.224 1.224 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.186 0.814 34 H 0.212 0.788 35 H 0.153 0.847 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.037 0.963 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.910 8.249 -24.618 26.126 hybrid contribution 0.379 -1.368 2.612 2.973 sum -2.531 6.881 -22.006 23.195 Atomic orbital electron populations 1.21630 0.93602 1.01498 1.01247 1.20825 0.94598 0.92704 0.86538 0.97502 1.23805 0.77595 1.01567 1.03829 1.47885 1.08529 1.54617 1.19573 1.17656 0.85002 0.79404 0.81603 1.90715 1.17493 1.60650 1.77572 1.20152 0.90626 1.05160 0.98043 1.26858 1.07646 1.05047 0.98779 1.82198 0.99808 1.41799 1.19555 1.27010 1.02132 0.99802 0.94182 1.20589 0.91221 0.96770 1.04806 1.23306 1.05508 1.00505 0.89178 1.23276 1.04976 0.89886 1.01465 1.66350 1.15915 1.12436 1.22718 1.22262 0.99040 0.95510 0.85500 1.20564 0.83516 0.94449 0.94083 0.90452 1.21751 0.97790 0.99185 0.99040 1.44440 1.01727 1.65231 1.20592 1.19522 0.95707 1.35776 0.87023 0.90632 1.25707 0.99316 1.01001 0.98301 1.70169 1.27019 1.44247 1.15795 0.85327 0.78417 0.78282 0.79093 1.19200 1.22279 1.22415 0.93722 0.92941 0.90455 0.93371 0.81416 0.78835 0.84694 0.87465 0.85199 0.86194 0.88300 0.90622 0.92203 0.93482 0.94626 0.96299 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.48 7.93 71.98 0.57 -3.91 16 2 C 0.16 6.85 3.23 45.03 0.15 6.99 16 3 H 0.01 0.34 7.41 -2.38 -0.02 0.32 16 4 C 0.06 2.14 5.72 86.42 0.49 2.63 16 5 N -0.58 -23.95 2.59 -822.05 -2.13 -26.09 16 6 C 0.58 23.11 7.65 86.62 0.66 23.77 16 7 O -0.58 -25.85 16.17 -4.14 -0.07 -25.92 16 8 C -0.01 -0.19 6.51 40.56 0.26 0.08 16 9 C -0.24 -5.78 10.62 67.12 0.71 -5.07 16 10 S 0.31 4.57 21.65 -56.49 -1.22 3.34 16 11 C 0.05 0.92 6.99 88.57 0.62 1.54 16 12 C -0.11 -1.56 6.33 -11.54 -0.07 -1.64 16 13 C -0.15 -1.04 10.01 30.59 0.31 -0.74 16 14 C -0.16 -1.56 10.23 30.59 0.31 -1.25 16 15 N -0.46 -13.04 6.73 -180.83 -1.22 -14.25 16 16 C 0.10 4.52 5.95 86.42 0.51 5.04 16 17 C 0.18 9.10 2.35 45.03 0.11 9.21 16 18 H 0.08 4.36 5.98 -2.39 -0.01 4.35 16 19 C -0.12 -5.90 8.94 71.98 0.64 -5.26 16 20 N -0.60 -30.06 2.69 -650.69 -1.75 -31.81 16 21 C -0.25 -13.43 8.59 84.03 0.72 -12.71 16 22 H 0.08 3.92 6.21 -2.91 -0.02 3.90 16 23 C -0.05 -2.64 4.91 84.86 0.42 -2.22 16 24 N -0.93 -53.98 10.14 21.65 0.22 -53.76 16 25 Si 0.96 44.94 29.59 68.60 2.03 46.97 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 29 H 0.04 1.78 7.67 -2.39 -0.02 1.76 16 30 H 0.05 1.92 7.38 -2.39 -0.02 1.90 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.05 1.85 8.12 -2.39 -0.02 1.83 16 33 H 0.17 5.77 3.58 -76.43 -0.27 5.49 16 34 H 0.19 4.29 8.04 -2.91 -0.02 4.26 16 35 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.11 0.56 7.21 -2.39 -0.02 0.54 16 37 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.08 3.40 7.01 -2.39 -0.02 3.38 16 41 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.05 2.58 7.21 -2.38 -0.02 2.56 16 43 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.02 0.90 7.02 -2.39 -0.02 0.88 16 45 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -70.65 365.01 3.03 -67.63 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.74 Total: 17.41 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 6.42 Total: 16.47 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -4.88 Total: -125.91 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.07 Total: -25.92 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -1.22 Total: 3.34 kcal Total: -70.65 3.03 -67.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880460604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.296 kcal (2) G-P(sol) polarization free energy of solvation -70.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds