Wall clock time and date at job start Tue Mar 31 2020 19:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.61103 * 2 1 4 4 C 1.52939 * 109.69053 * 239.60355 * 2 1 3 5 5 N 1.46959 * 108.87161 * 190.96656 * 4 2 1 6 6 C 1.34775 * 120.59562 * 235.20222 * 5 4 2 7 7 O 1.21283 * 120.00233 * 179.71848 * 6 5 4 8 8 C 1.50700 * 119.99533 * 359.72886 * 6 5 4 9 9 S 1.81406 * 109.46819 * 179.97438 * 8 6 5 10 10 C 1.76203 * 102.99962 * 179.97438 * 9 8 6 11 11 C 1.39544 * 120.87239 * 179.97438 * 10 9 8 12 12 C 1.37866 * 119.05872 * 179.75151 * 11 10 9 13 13 N 1.32008 * 120.85240 * 0.25117 * 12 11 10 14 14 C 1.32015 * 121.92310 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.85090 * 359.97438 * 14 13 12 16 16 C 1.46967 * 118.81314 * 54.93361 * 5 4 2 17 17 C 1.53375 * 108.63483 * 305.02343 * 16 5 4 18 18 H 1.08997 * 109.60602 * 289.67975 * 17 16 5 19 19 C 1.52993 * 109.60682 * 169.16875 * 17 16 5 20 20 N 1.46960 * 109.61276 * 120.34111 * 2 1 3 21 21 C 1.36940 * 120.59178 * 354.95084 * 20 2 1 22 22 H 1.07998 * 119.99927 * 126.61159 * 21 20 2 23 23 C 1.38808 * 119.99855 * 306.61007 * 21 20 2 24 24 N 1.31622 * 120.00322 * 335.54683 * 23 21 20 25 25 Si 1.86800 * 119.99971 * 155.54549 * 23 21 20 26 26 H 1.48500 * 109.47059 * 90.00089 * 25 23 21 27 27 H 1.48503 * 109.47399 * 210.00053 * 25 23 21 28 28 H 1.48495 * 109.47300 * 329.99974 * 25 23 21 29 29 H 1.08993 * 109.47146 * 307.57769 * 1 2 3 30 30 H 1.08998 * 109.47068 * 67.58518 * 1 2 3 31 31 H 1.09000 * 109.47197 * 187.57759 * 1 2 3 32 32 H 1.09001 * 109.52453 * 71.12669 * 4 2 1 33 33 H 1.09003 * 109.45483 * 310.76385 * 4 2 1 34 34 H 1.08994 * 109.47931 * 59.99534 * 8 6 5 35 35 H 1.09000 * 109.47047 * 299.98860 * 8 6 5 36 36 H 1.07996 * 120.47195 * 0.02871 * 11 10 9 37 37 H 1.08006 * 119.57310 * 180.27783 * 12 11 10 38 38 H 1.08000 * 119.58153 * 179.97438 * 14 13 12 39 39 H 1.07996 * 120.47237 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.61202 * 64.77127 * 16 5 4 41 41 H 1.09001 * 109.61032 * 185.27758 * 16 5 4 42 42 H 1.08998 * 109.47538 * 60.00633 * 19 17 16 43 43 H 1.09005 * 109.47257 * 179.97438 * 19 17 16 44 44 H 1.08997 * 109.47560 * 299.99951 * 19 17 16 45 45 H 0.96994 * 120.00178 * 185.07653 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0453 -0.7286 -1.2420 5 7 3.4908 -0.9505 -1.0974 6 6 4.3493 -0.5156 -2.0410 7 8 5.5407 -0.7000 -1.9082 8 6 3.8289 0.2001 -3.2608 9 16 5.2191 0.6562 -4.3332 10 6 4.4288 1.4674 -5.6832 11 6 5.1737 1.9793 -6.7463 12 6 4.5164 2.6024 -7.7857 13 7 3.2018 2.7217 -7.7808 14 6 2.4623 2.2559 -6.7914 15 6 3.0419 1.6196 -5.7143 16 6 3.9840 -1.6498 0.0974 17 6 3.4693 -0.9163 1.3421 18 1 3.9756 0.0444 1.4360 19 6 3.7370 -1.7657 2.5860 20 7 2.0232 -0.6993 1.1947 21 6 1.1511 -1.1405 2.1539 22 1 1.1724 -2.1732 2.4692 23 6 0.2396 -0.2604 2.7207 24 7 0.4907 1.0317 2.7302 25 14 -1.3436 -0.9096 3.4700 26 1 -1.1225 -1.2152 4.9063 27 1 -2.4096 0.1162 3.3407 28 1 -1.7574 -2.1457 2.7588 29 1 -0.3633 0.6267 0.8144 30 1 -0.3633 0.3919 -0.9500 31 1 -0.3633 -1.0187 0.1355 32 1 1.8551 -0.1203 -2.1263 33 1 1.5357 -1.6874 -1.3380 34 1 3.2962 1.1003 -2.9545 35 1 3.1500 -0.4564 -3.8051 36 1 6.2495 1.8847 -6.7569 37 1 5.0844 2.9976 -8.6150 38 1 1.3894 2.3746 -6.8260 39 1 2.4311 1.2405 -4.9085 40 1 3.6158 -2.6758 0.0989 41 1 5.0741 -1.6498 0.0974 42 1 4.8088 -1.9379 2.6847 43 1 3.3708 -1.2422 3.4692 44 1 3.2227 -2.7219 2.4907 45 1 -0.1094 1.6390 3.1905 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880462339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:20 Heat of formation + Delta-G solvation = 38.943724 kcal Electronic energy + Delta-G solvation = -26780.411118 eV Core-core repulsion = 23118.398982 eV Total energy + Delta-G solvation = -3662.012136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.11964 -39.88008 -37.47719 -34.34999 -33.27457 -32.78757 -31.67525 -31.38712 -30.15011 -27.82490 -26.13809 -25.69599 -24.07429 -23.83663 -23.47330 -20.54062 -20.10645 -19.08660 -18.20393 -17.24254 -16.59475 -16.27384 -16.03171 -15.83090 -15.49392 -15.16889 -14.92228 -14.60492 -14.22953 -13.99570 -13.83176 -13.61825 -13.40380 -13.20341 -13.01141 -12.38045 -12.22144 -12.09904 -11.71441 -11.65222 -11.45548 -11.13822 -10.87748 -10.86476 -10.62900 -10.59760 -10.57607 -10.43897 -10.19835 -10.05023 -9.92675 -9.67762 -9.61372 -9.48933 -8.54096 -8.15751 -7.80670 -6.48644 -5.92334 -3.65394 0.81398 0.86366 1.02387 2.05387 2.65433 3.21171 3.21870 3.31238 3.34360 3.50881 4.19224 4.29217 4.43540 4.49961 4.68405 4.73888 4.87019 4.94897 5.02220 5.13815 5.18632 5.47529 5.51340 5.52939 5.58850 5.70051 5.81916 5.88797 5.98329 6.05678 6.22329 6.33065 6.35856 6.43134 6.46024 6.54816 6.68923 6.78327 7.01490 7.17006 7.21749 7.45923 7.64811 7.71308 7.76487 8.23836 8.48234 9.03102 9.57614 10.35290 11.01428 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017401 B = 0.002940 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.685012 B = 9522.646823 C =10800.405669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.181 3.819 3 H 0.032 0.968 4 C 0.085 3.915 5 N -0.588 5.588 6 C 0.528 3.472 7 O -0.539 6.539 8 C -0.151 4.151 9 S -0.009 6.009 10 C -0.058 4.058 11 C -0.157 4.157 12 C 0.115 3.885 13 N -0.496 5.496 14 C 0.120 3.880 15 C -0.192 4.192 16 C 0.100 3.900 17 C 0.156 3.844 18 H 0.029 0.971 19 C -0.126 4.126 20 N -0.575 5.575 21 C -0.275 4.275 22 H 0.055 0.945 23 C 0.043 3.957 24 N -0.871 5.871 25 Si 0.882 3.118 26 H -0.283 1.283 27 H -0.287 1.287 28 H -0.273 1.273 29 H 0.090 0.910 30 H 0.025 0.975 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.140 0.860 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.135 0.865 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.037 0.963 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.241 0.016 -15.008 15.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.074 3.926 3 H 0.049 0.951 4 C -0.040 4.040 5 N -0.319 5.319 6 C 0.313 3.687 7 O -0.417 6.417 8 C -0.302 4.302 9 S 0.235 5.765 10 C -0.180 4.180 11 C -0.184 4.184 12 C -0.042 4.042 13 N -0.207 5.207 14 C -0.038 4.038 15 C -0.218 4.218 16 C -0.023 4.023 17 C 0.049 3.951 18 H 0.047 0.953 19 C -0.184 4.184 20 N -0.299 5.299 21 C -0.404 4.404 22 H 0.072 0.928 23 C -0.160 4.160 24 N -0.510 5.510 25 Si 0.709 3.291 26 H -0.209 1.209 27 H -0.212 1.212 28 H -0.198 1.198 29 H 0.109 0.891 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.158 0.842 37 H 0.177 0.823 38 H 0.176 0.824 39 H 0.153 0.847 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.506 0.214 -15.284 16.247 hybrid contribution -2.054 -0.281 0.959 2.284 sum 3.452 -0.067 -14.325 14.735 Atomic orbital electron populations 1.21991 0.94838 1.02936 1.00440 1.20516 0.93916 0.93578 0.84611 0.95064 1.22661 0.79217 1.01449 1.00660 1.47938 1.07478 1.55953 1.20560 1.19391 0.86439 0.79547 0.83285 1.90707 1.15162 1.57875 1.77980 1.23929 1.01910 1.05492 0.98837 1.86281 1.09318 1.66970 1.13955 1.22740 0.96878 0.99158 0.99230 1.21734 1.01234 1.01149 0.94262 1.22700 0.90440 0.94292 0.96811 1.67760 1.07214 1.18725 1.27030 1.22675 1.00264 0.92242 0.88637 1.22176 0.93796 1.04154 1.01712 1.22406 0.99522 0.95629 0.84762 1.20881 0.87268 0.95560 0.91387 0.95286 1.21629 0.98249 1.00035 0.98506 1.43952 0.99434 1.67706 1.18831 1.18578 1.12127 0.92586 1.17134 0.92803 1.25553 0.99832 0.95230 0.95370 1.70103 1.36418 1.02534 1.41931 0.86681 0.84104 0.78837 0.79462 1.20910 1.21235 1.19789 0.89146 0.95631 0.92591 0.91468 0.91154 0.86256 0.86510 0.84246 0.82334 0.82431 0.84679 0.91688 0.89935 0.94380 0.91329 0.92810 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.83 37.15 0.29 -2.55 16 2 C 0.18 3.62 3.29 -67.71 -0.22 3.40 16 3 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.08 1.34 5.79 -3.82 -0.02 1.32 16 5 N -0.59 -9.86 2.95 -172.75 -0.51 -10.37 16 6 C 0.53 8.57 7.72 -10.99 -0.08 8.48 16 7 O -0.54 -10.32 15.27 5.56 0.08 -10.23 16 8 C -0.15 -1.84 3.20 36.01 0.12 -1.73 16 9 S -0.01 -0.12 21.10 -107.50 -2.27 -2.38 16 10 C -0.06 -0.65 6.17 -38.60 -0.24 -0.88 16 11 C -0.16 -1.54 9.90 -39.23 -0.39 -1.92 16 12 C 0.12 1.08 11.17 -17.61 -0.20 0.89 16 13 N -0.50 -5.47 10.36 -13.36 -0.14 -5.60 16 14 C 0.12 1.18 11.17 -17.61 -0.20 0.99 16 15 C -0.19 -1.93 9.44 -39.23 -0.37 -2.30 16 16 C 0.10 1.78 5.91 -3.59 -0.02 1.76 16 17 C 0.16 3.15 3.65 -67.49 -0.25 2.91 16 18 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 19 C -0.13 -2.35 8.18 37.15 0.30 -2.05 16 20 N -0.57 -12.81 2.75 -157.29 -0.43 -13.24 16 21 C -0.27 -6.66 6.63 -15.06 -0.10 -6.76 16 22 H 0.05 1.34 7.18 -52.49 -0.38 0.96 16 23 C 0.04 1.08 3.08 -17.43 -0.05 1.02 16 24 N -0.87 -22.97 12.03 55.49 0.67 -22.30 16 25 Si 0.88 19.50 29.62 -169.99 -5.04 14.46 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 29 H 0.09 2.07 5.03 -51.93 -0.26 1.81 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 1.12 7.56 -51.93 -0.39 0.73 16 32 H 0.07 0.84 5.91 -51.93 -0.31 0.54 16 33 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 34 H 0.12 1.33 7.35 -51.93 -0.38 0.95 16 35 H 0.12 1.17 7.59 -51.92 -0.39 0.77 16 36 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.14 1.14 6.08 -52.49 -0.32 0.82 16 40 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 41 H 0.08 1.47 6.99 -51.93 -0.36 1.10 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.42 7.75 -51.93 -0.40 1.02 16 44 H 0.05 0.98 7.43 -51.93 -0.39 0.60 16 45 H 0.26 6.60 8.32 -40.82 -0.34 6.26 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -29.39 368.69 -10.03 -39.42 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.52 Total: 2.12 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -1.43 Total: 2.57 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.41 Total: -51.51 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.04 Total: 14.46 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.27 Total: -2.38 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.39 -10.03 -39.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880462339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.366 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds