Wall clock time and date at job start Tue Mar 31 2020 19:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.74623 * 2 1 4 4 C 1.53805 * 109.75994 * 239.37182 * 2 1 3 5 5 N 1.46969 * 108.58146 * 289.94696 * 4 2 1 6 6 C 1.34772 * 120.59533 * 124.66666 * 5 4 2 7 7 O 1.21626 * 120.00060 * 353.68304 * 6 5 4 8 8 C 1.47269 * 119.99964 * 173.67901 * 6 5 4 9 9 N 1.33558 * 123.14109 * 352.45920 * 8 6 5 10 10 C 1.28651 * 115.76827 * 179.83157 * 9 8 6 11 11 S 1.70767 * 110.55438 * 0.41802 * 10 9 8 12 12 C 1.35205 * 123.14236 * 172.74887 * 8 6 5 13 13 C 1.50704 * 125.58684 * 0.02562 * 12 8 6 14 14 C 1.52993 * 117.49907 * 188.61673 * 13 12 8 15 15 C 1.52998 * 60.00394 * 252.51093 * 14 13 12 16 16 C 1.46963 * 118.80808 * 304.65002 * 5 4 2 17 17 C 1.53372 * 108.63745 * 55.22583 * 16 5 4 18 18 H 1.08992 * 109.75139 * 70.40483 * 17 16 5 19 19 C 1.52998 * 109.60959 * 190.83078 * 17 16 5 20 20 N 1.46963 * 109.60954 * 120.42161 * 2 1 3 21 21 C 1.36929 * 120.59655 * 244.54356 * 20 2 1 22 22 H 1.08002 * 119.99927 * 301.13645 * 21 20 2 23 23 C 1.38814 * 120.00296 * 121.13925 * 21 20 2 24 24 N 1.31621 * 120.00084 * 165.97062 * 23 21 20 25 25 Si 1.86797 * 119.99924 * 345.97544 * 23 21 20 26 26 H 1.48507 * 109.46863 * 275.39359 * 25 23 21 27 27 H 1.48502 * 109.47166 * 35.38756 * 25 23 21 28 28 H 1.48496 * 109.47435 * 155.38869 * 25 23 21 29 29 H 1.08999 * 109.47562 * 299.57037 * 1 2 3 30 30 H 1.09006 * 109.47348 * 59.57906 * 1 2 3 31 31 H 1.09010 * 109.46892 * 179.57387 * 1 2 3 32 32 H 1.09000 * 109.74558 * 170.15802 * 4 2 1 33 33 H 1.09001 * 109.67790 * 49.69243 * 4 2 1 34 34 H 1.07996 * 124.71882 * 180.18846 * 10 9 8 35 35 H 1.09002 * 115.54838 * 334.32645 * 13 12 8 36 36 H 1.08998 * 117.49975 * 0.02562 * 14 13 12 37 37 H 1.09011 * 117.49614 * 145.01845 * 14 13 12 38 38 H 1.09001 * 117.50206 * 252.51579 * 15 14 13 39 39 H 1.08998 * 117.49852 * 107.48893 * 15 14 13 40 40 H 1.08999 * 109.61226 * 295.47643 * 16 5 4 41 41 H 1.09001 * 109.75066 * 175.05430 * 16 5 4 42 42 H 1.09000 * 109.47449 * 179.14122 * 19 17 16 43 43 H 1.08997 * 109.47459 * 299.14673 * 19 17 16 44 44 H 1.09002 * 109.47445 * 59.14128 * 19 17 16 45 45 H 0.96997 * 119.99582 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0500 -0.7374 -1.2456 5 7 1.7610 -2.1707 -1.0959 6 6 1.0610 -2.8314 -2.0392 7 8 0.5642 -2.2214 -2.9667 8 6 0.8979 -4.2921 -1.9469 9 7 1.5338 -5.0422 -1.0432 10 6 1.2840 -6.3035 -1.0877 11 16 0.1812 -6.6523 -2.3441 12 6 0.0947 -4.9998 -2.7728 13 6 -0.7391 -4.4260 -3.8894 14 6 -1.7340 -5.3607 -4.5802 15 6 -0.4603 -4.9263 -5.3082 16 6 2.2494 -2.8704 0.1006 17 6 1.7342 -2.1342 1.3435 18 1 0.6587 -2.2824 1.4400 19 6 2.4405 -2.6730 2.5891 20 7 2.0232 -0.7010 1.1938 21 6 2.7343 -0.0297 2.1522 22 1 3.6557 0.4694 1.8905 23 6 2.2712 0.0095 3.4602 24 7 3.0689 0.4054 4.4293 25 14 0.5157 -0.5000 3.8450 26 1 -0.3932 0.6547 3.6303 27 1 0.1170 -1.6166 2.9508 28 1 0.4276 -0.9431 5.2596 29 1 -0.3634 0.5071 0.8938 30 1 -0.3634 0.5204 -0.8862 31 1 -0.3633 -1.0277 -0.0076 32 1 3.1258 -0.5890 -1.3390 33 1 1.5492 -0.3543 -2.1347 34 1 1.7149 -7.0396 -0.4253 35 1 -1.0276 -3.3815 -3.7716 36 1 -1.7858 -6.3905 -4.2269 37 1 -2.6776 -4.9312 -4.9171 38 1 -0.5658 -4.2110 -6.1238 39 1 0.3262 -5.6705 -5.4340 40 1 3.3394 -2.8738 0.1030 41 1 1.8805 -3.8961 0.1038 42 1 2.0839 -2.1379 3.4692 43 1 2.2248 -3.7359 2.6980 44 1 3.5163 -2.5293 2.4877 45 1 2.7453 0.4324 5.3433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880466868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:12 Heat of formation + Delta-G solvation = 91.338834 kcal Electronic energy + Delta-G solvation = -28212.293172 eV Core-core repulsion = 24552.553058 eV Total energy + Delta-G solvation = -3659.740114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.81429 -38.86351 -37.62422 -37.17904 -34.09188 -32.79233 -31.56753 -30.62065 -28.33339 -27.20460 -25.97783 -25.26320 -23.44208 -22.71437 -22.24960 -22.08238 -20.97083 -19.27017 -18.55938 -18.18692 -16.87237 -16.39172 -15.85347 -15.61231 -15.45656 -14.99657 -14.80800 -14.42758 -14.30889 -14.07165 -13.50155 -13.41055 -13.11232 -12.60286 -12.47651 -12.28702 -12.14507 -12.06760 -11.88081 -11.59070 -11.46962 -11.34786 -11.24294 -10.90153 -10.76798 -10.68444 -10.38088 -10.17690 -9.97658 -9.92388 -9.72908 -9.55740 -9.47410 -9.00629 -8.90309 -8.52548 -8.11187 -6.35895 -6.00598 -3.69789 0.35202 1.00737 1.42275 1.94502 3.34240 3.37030 3.44818 3.46359 3.51282 3.69545 4.01142 4.27455 4.50244 4.55678 4.73116 4.86859 5.00078 5.02620 5.25412 5.30810 5.34636 5.49047 5.60589 5.71505 5.72677 5.79528 5.94234 6.02154 6.08606 6.13515 6.20563 6.27346 6.36793 6.46513 6.49746 6.66787 6.68269 6.81539 6.88271 7.05988 7.12347 7.28916 7.34636 7.86450 8.13119 8.44991 8.57317 9.03762 9.66189 10.24131 11.10860 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018823 B = 0.003952 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.191289 B = 7083.767702 C = 7716.609754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.152 3.848 3 H 0.083 0.917 4 C 0.100 3.900 5 N -0.574 5.574 6 C 0.585 3.415 7 O -0.547 6.547 8 C 0.010 3.990 9 N -0.422 5.422 10 C -0.009 4.009 11 S 0.191 5.809 12 C -0.152 4.152 13 C -0.081 4.081 14 C -0.179 4.179 15 C -0.159 4.159 16 C 0.061 3.939 17 C 0.149 3.851 18 H 0.035 0.965 19 C -0.131 4.131 20 N -0.596 5.596 21 C -0.276 4.276 22 H 0.069 0.931 23 C 0.058 3.942 24 N -0.899 5.899 25 Si 0.872 3.128 26 H -0.291 1.291 27 H -0.253 1.253 28 H -0.300 1.300 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.206 0.794 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.135 0.865 42 H 0.062 0.938 43 H 0.035 0.965 44 H 0.065 0.935 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.869 -16.185 -15.283 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.101 0.899 4 C -0.024 4.024 5 N -0.303 5.303 6 C 0.371 3.629 7 O -0.426 6.426 8 C -0.123 4.123 9 N -0.136 5.136 10 C -0.308 4.308 11 S 0.447 5.553 12 C -0.276 4.276 13 C -0.101 4.101 14 C -0.217 4.217 15 C -0.197 4.197 16 C -0.063 4.063 17 C 0.043 3.957 18 H 0.053 0.947 19 C -0.188 4.188 20 N -0.320 5.320 21 C -0.405 4.405 22 H 0.086 0.914 23 C -0.144 4.144 24 N -0.538 5.538 25 Si 0.702 3.298 26 H -0.218 1.218 27 H -0.179 1.179 28 H -0.227 1.227 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.222 0.778 35 H 0.164 0.836 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.152 0.848 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.084 0.916 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.080 -16.535 -15.445 23.708 hybrid contribution -0.653 0.727 0.750 1.232 sum -7.732 -15.808 -14.695 22.926 Atomic orbital electron populations 1.22181 0.98476 1.00706 1.00335 1.21180 0.91774 0.95971 0.86578 0.89873 1.22346 1.00333 0.79558 1.00118 1.47804 1.51779 1.10264 1.20469 1.17050 0.79189 0.84115 0.82575 1.90700 1.49630 1.67667 1.34640 1.20480 0.99786 0.96448 0.95621 1.66998 1.22624 1.03442 1.20568 1.28631 1.02216 0.96664 1.03240 1.82692 1.40762 1.04477 1.27351 1.24743 1.02894 0.97468 1.02483 1.20619 0.99665 1.00580 0.89275 1.23162 0.94778 0.99477 1.04288 1.23050 0.99089 1.03293 0.94223 1.23531 0.99529 0.99392 0.83872 1.21201 0.96524 0.85299 0.92641 0.94727 1.21837 1.01854 0.97307 0.97833 1.44344 1.63253 1.02944 1.21473 1.18506 1.03194 1.31271 0.87536 0.91389 1.25991 0.96804 0.95048 0.96559 1.69830 1.35479 1.48443 1.00097 0.87267 0.86559 0.79457 0.76566 1.21815 1.17854 1.22713 0.93055 0.93606 0.93867 0.91555 0.89834 0.77769 0.83626 0.88737 0.87675 0.87718 0.88700 0.92008 0.84829 0.91919 0.94558 0.91564 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.14 37.16 0.34 -2.79 16 2 C 0.15 3.13 3.33 -67.26 -0.22 2.91 16 3 H 0.08 1.72 7.93 -51.93 -0.41 1.31 16 4 C 0.10 1.86 6.00 -3.37 -0.02 1.84 16 5 N -0.57 -10.73 2.59 -173.54 -0.45 -11.18 16 6 C 0.59 10.57 7.65 -12.59 -0.10 10.48 16 7 O -0.55 -10.43 13.67 5.25 0.07 -10.36 16 8 C 0.01 0.16 6.50 -84.53 -0.55 -0.39 16 9 N -0.42 -5.91 6.73 -12.36 -0.08 -5.99 16 10 C -0.01 -0.09 12.17 51.43 0.63 0.53 16 11 S 0.19 1.66 21.77 -107.50 -2.34 -0.68 16 12 C -0.15 -1.92 6.04 -35.39 -0.21 -2.13 16 13 C -0.08 -0.95 5.33 -91.77 -0.49 -1.44 16 14 C -0.18 -1.51 10.03 -26.74 -0.27 -1.77 16 15 C -0.16 -1.46 10.23 -26.73 -0.27 -1.73 16 16 C 0.06 1.15 5.54 -3.60 -0.02 1.13 16 17 C 0.15 3.21 1.98 -67.48 -0.13 3.08 16 18 H 0.04 0.80 5.69 -51.93 -0.30 0.51 16 19 C -0.13 -2.81 7.68 37.16 0.29 -2.52 16 20 N -0.60 -13.89 1.83 -156.77 -0.29 -14.18 16 21 C -0.28 -7.48 8.74 -15.06 -0.13 -7.61 16 22 H 0.07 2.03 8.06 -52.49 -0.42 1.61 16 23 C 0.06 1.63 4.19 -17.43 -0.07 1.56 16 24 N -0.90 -26.70 13.97 55.49 0.78 -25.92 16 25 Si 0.87 22.03 24.95 -169.99 -4.24 17.79 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 27 H -0.25 -6.11 4.48 56.52 0.25 -5.86 16 28 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 29 H 0.05 1.08 7.85 -51.93 -0.41 0.67 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.89 7.01 -51.92 -0.36 0.52 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.08 1.49 6.97 -51.93 -0.36 1.13 16 34 H 0.21 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.15 2.04 6.33 -51.93 -0.33 1.71 16 36 H 0.09 0.69 7.28 -51.93 -0.38 0.31 16 37 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.20 8.12 -51.93 -0.42 0.77 16 41 H 0.14 2.34 3.89 -80.59 -0.31 2.02 16 42 H 0.06 1.50 3.20 -51.93 -0.17 1.33 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 1.48 7.91 -51.93 -0.41 1.06 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 354.23 15.07 5.34 5.34 Total: -1.00 -31.76 354.23 -8.98 -40.74 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.53 Total: 3.31 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.24 Total: 1.14 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.05 Total: -57.28 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.24 Total: 17.79 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.34 Total: -0.68 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.76 -8.98 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880466868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.082 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds