Wall clock time and date at job start Tue Mar 31 2020 19:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.74623 * 2 1 4 4 C 1.53805 * 109.75994 * 239.37182 * 2 1 3 5 5 N 1.46969 * 108.58146 * 289.94696 * 4 2 1 6 6 C 1.34772 * 120.59533 * 124.66666 * 5 4 2 7 7 O 1.21626 * 120.00060 * 353.68304 * 6 5 4 8 8 C 1.47269 * 119.99964 * 173.67901 * 6 5 4 9 9 N 1.33558 * 123.14109 * 352.45920 * 8 6 5 10 10 C 1.28651 * 115.76827 * 179.83157 * 9 8 6 11 11 S 1.70767 * 110.55438 * 0.41802 * 10 9 8 12 12 C 1.35205 * 123.14236 * 172.74887 * 8 6 5 13 13 C 1.50704 * 125.58684 * 0.02562 * 12 8 6 14 14 C 1.52993 * 117.49907 * 188.61673 * 13 12 8 15 15 C 1.52998 * 60.00394 * 252.51093 * 14 13 12 16 16 C 1.46963 * 118.80808 * 304.65002 * 5 4 2 17 17 C 1.53372 * 108.63745 * 55.22583 * 16 5 4 18 18 H 1.08992 * 109.75139 * 70.40483 * 17 16 5 19 19 C 1.52998 * 109.60959 * 190.83078 * 17 16 5 20 20 N 1.46963 * 109.60954 * 120.42161 * 2 1 3 21 21 C 1.36929 * 120.59655 * 244.54356 * 20 2 1 22 22 H 1.08002 * 119.99927 * 301.13645 * 21 20 2 23 23 C 1.38814 * 120.00296 * 121.13925 * 21 20 2 24 24 N 1.31621 * 120.00084 * 165.97062 * 23 21 20 25 25 Si 1.86797 * 119.99924 * 345.97544 * 23 21 20 26 26 H 1.48507 * 109.46863 * 275.39359 * 25 23 21 27 27 H 1.48502 * 109.47166 * 35.38756 * 25 23 21 28 28 H 1.48496 * 109.47435 * 155.38869 * 25 23 21 29 29 H 1.08999 * 109.47562 * 299.57037 * 1 2 3 30 30 H 1.09006 * 109.47348 * 59.57906 * 1 2 3 31 31 H 1.09010 * 109.46892 * 179.57387 * 1 2 3 32 32 H 1.09000 * 109.74558 * 170.15802 * 4 2 1 33 33 H 1.09001 * 109.67790 * 49.69243 * 4 2 1 34 34 H 1.07996 * 124.71882 * 180.18846 * 10 9 8 35 35 H 1.09002 * 115.54838 * 334.32645 * 13 12 8 36 36 H 1.08998 * 117.49975 * 0.02562 * 14 13 12 37 37 H 1.09011 * 117.49614 * 145.01845 * 14 13 12 38 38 H 1.09001 * 117.50206 * 252.51579 * 15 14 13 39 39 H 1.08998 * 117.49852 * 107.48893 * 15 14 13 40 40 H 1.08999 * 109.61226 * 295.47643 * 16 5 4 41 41 H 1.09001 * 109.75066 * 175.05430 * 16 5 4 42 42 H 1.09000 * 109.47449 * 179.14122 * 19 17 16 43 43 H 1.08997 * 109.47459 * 299.14673 * 19 17 16 44 44 H 1.09002 * 109.47445 * 59.14128 * 19 17 16 45 45 H 0.96997 * 119.99582 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0500 -0.7374 -1.2456 5 7 1.7610 -2.1707 -1.0959 6 6 1.0610 -2.8314 -2.0392 7 8 0.5642 -2.2214 -2.9667 8 6 0.8979 -4.2921 -1.9469 9 7 1.5338 -5.0422 -1.0432 10 6 1.2840 -6.3035 -1.0877 11 16 0.1812 -6.6523 -2.3441 12 6 0.0947 -4.9998 -2.7728 13 6 -0.7391 -4.4260 -3.8894 14 6 -1.7340 -5.3607 -4.5802 15 6 -0.4603 -4.9263 -5.3082 16 6 2.2494 -2.8704 0.1006 17 6 1.7342 -2.1342 1.3435 18 1 0.6587 -2.2824 1.4400 19 6 2.4405 -2.6730 2.5891 20 7 2.0232 -0.7010 1.1938 21 6 2.7343 -0.0297 2.1522 22 1 3.6557 0.4694 1.8905 23 6 2.2712 0.0095 3.4602 24 7 3.0689 0.4054 4.4293 25 14 0.5157 -0.5000 3.8450 26 1 -0.3932 0.6547 3.6303 27 1 0.1170 -1.6166 2.9508 28 1 0.4276 -0.9431 5.2596 29 1 -0.3634 0.5071 0.8938 30 1 -0.3634 0.5204 -0.8862 31 1 -0.3633 -1.0277 -0.0076 32 1 3.1258 -0.5890 -1.3390 33 1 1.5492 -0.3543 -2.1347 34 1 1.7149 -7.0396 -0.4253 35 1 -1.0276 -3.3815 -3.7716 36 1 -1.7858 -6.3905 -4.2269 37 1 -2.6776 -4.9312 -4.9171 38 1 -0.5658 -4.2110 -6.1238 39 1 0.3262 -5.6705 -5.4340 40 1 3.3394 -2.8738 0.1030 41 1 1.8805 -3.8961 0.1038 42 1 2.0839 -2.1379 3.4692 43 1 2.2248 -3.7359 2.6980 44 1 3.5163 -2.5293 2.4877 45 1 2.7453 0.4324 5.3433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880466868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:11 Heat of formation + Delta-G solvation = 72.119057 kcal Electronic energy + Delta-G solvation = -28213.126604 eV Core-core repulsion = 24552.553058 eV Total energy + Delta-G solvation = -3660.573546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95122 -40.18076 -38.92752 -38.16890 -35.78449 -34.43944 -33.58010 -31.54785 -30.16189 -28.51920 -27.57358 -26.47107 -25.23579 -23.51605 -23.28257 -23.10516 -22.51582 -20.70693 -20.12780 -19.22839 -18.44544 -17.66594 -17.28436 -16.85581 -16.75572 -16.64353 -16.16292 -15.57216 -15.44546 -15.29135 -15.01228 -14.91676 -14.75131 -14.26287 -14.19538 -13.81773 -13.42269 -13.19253 -13.12372 -13.06652 -12.75814 -12.61045 -12.50435 -12.41727 -12.28848 -12.06114 -11.93695 -11.81669 -11.74424 -11.56441 -11.28111 -10.92632 -10.63087 -10.34455 -10.04983 -9.96127 -9.63075 -8.32637 -8.14248 -5.87089 -0.50955 0.22722 0.60201 0.92098 1.31174 1.38116 1.47490 2.05064 2.25921 2.39639 2.91145 3.03275 3.13227 3.30851 3.42691 3.73191 3.89502 4.03742 4.07798 4.10791 4.19137 4.33791 4.40055 4.46978 4.54374 4.56511 4.63465 4.68916 4.71271 4.74039 4.83615 4.92135 4.94943 5.01478 5.05940 5.15876 5.16860 5.19744 5.33257 5.34984 5.54779 5.69117 5.98656 6.32007 6.34979 6.53086 7.09380 7.10876 7.55714 8.17758 8.95988 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018823 B = 0.003952 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.191289 B = 7083.767702 C = 7716.609754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.147 3.853 3 H 0.076 0.924 4 C 0.109 3.891 5 N -0.584 5.584 6 C 0.582 3.418 7 O -0.565 6.565 8 C -0.028 4.028 9 N -0.460 5.460 10 C -0.010 4.010 11 S 0.289 5.711 12 C -0.163 4.163 13 C -0.114 4.114 14 C -0.155 4.155 15 C -0.154 4.154 16 C 0.074 3.926 17 C 0.148 3.852 18 H 0.027 0.973 19 C -0.127 4.127 20 N -0.605 5.605 21 C -0.263 4.263 22 H 0.029 0.971 23 C 0.021 3.979 24 N -0.942 5.942 25 Si 0.924 3.076 26 H -0.300 1.300 27 H -0.236 1.236 28 H -0.300 1.300 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.243 0.757 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.051 0.949 41 H 0.158 0.842 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.049 0.951 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.750 -20.031 -17.029 27.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.040 3.960 3 H 0.094 0.906 4 C -0.015 4.015 5 N -0.314 5.314 6 C 0.369 3.631 7 O -0.446 6.446 8 C -0.161 4.161 9 N -0.174 5.174 10 C -0.308 4.308 11 S 0.547 5.453 12 C -0.288 4.288 13 C -0.135 4.135 14 C -0.192 4.192 15 C -0.191 4.191 16 C -0.050 4.050 17 C 0.043 3.957 18 H 0.045 0.955 19 C -0.185 4.185 20 N -0.330 5.330 21 C -0.393 4.393 22 H 0.046 0.954 23 C -0.177 4.177 24 N -0.584 5.584 25 Si 0.753 3.247 26 H -0.228 1.228 27 H -0.160 1.160 28 H -0.228 1.228 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.259 0.741 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.069 0.931 41 H 0.174 0.826 42 H 0.056 0.944 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.976 -20.413 -17.230 28.180 hybrid contribution -0.067 1.807 1.126 2.130 sum -9.043 -18.607 -16.104 26.217 Atomic orbital electron populations 1.22034 0.97413 1.00267 1.00692 1.21263 0.92514 0.95803 0.86389 0.90576 1.22130 1.00088 0.80150 0.99106 1.47842 1.52577 1.10015 1.20943 1.17512 0.78100 0.85667 0.81788 1.90677 1.50126 1.68693 1.35125 1.20141 1.02585 0.95151 0.98207 1.66706 1.23971 1.05176 1.21565 1.29235 1.01767 0.95999 1.03750 1.82334 1.38169 0.99987 1.24835 1.25066 1.01696 1.00249 1.01753 1.20527 1.02240 1.00032 0.90675 1.23286 0.94647 0.99440 1.01875 1.23155 0.99994 1.03278 0.92721 1.23427 0.98727 1.00266 0.82539 1.21259 0.95994 0.84268 0.94209 0.95541 1.21782 1.00585 0.99430 0.96658 1.44434 1.63167 1.04015 1.21411 1.18251 1.02014 1.30586 0.88429 0.95360 1.26425 0.99574 0.95444 0.96304 1.69934 1.37128 1.50814 1.00485 0.86425 0.82476 0.79280 0.76518 1.22795 1.16003 1.22780 0.94529 0.91273 0.94611 0.91886 0.89047 0.74097 0.86768 0.86982 0.86496 0.87412 0.87736 0.93103 0.82568 0.94354 0.90766 0.93226 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.71 9.14 71.98 0.66 -5.05 16 2 C 0.15 6.15 3.33 45.17 0.15 6.30 16 3 H 0.08 3.25 7.93 -2.39 -0.02 3.23 16 4 C 0.11 4.12 6.00 86.56 0.52 4.64 16 5 N -0.58 -21.83 2.59 -821.21 -2.13 -23.96 16 6 C 0.58 20.89 7.65 86.62 0.66 21.55 16 7 O -0.57 -21.72 13.67 -4.11 -0.06 -21.78 16 8 C -0.03 -0.82 6.50 40.56 0.26 -0.55 16 9 N -0.46 -11.77 6.73 -193.03 -1.30 -13.07 16 10 C -0.01 -0.16 12.17 130.71 1.59 1.43 16 11 S 0.29 3.72 21.77 -56.49 -1.23 2.49 16 12 C -0.16 -3.73 6.04 24.99 0.15 -3.58 16 13 C -0.11 -2.48 5.33 -11.54 -0.06 -2.54 16 14 C -0.16 -2.08 10.03 30.59 0.31 -1.77 16 15 C -0.15 -2.43 10.23 30.59 0.31 -2.12 16 16 C 0.07 2.77 5.54 86.42 0.48 3.24 16 17 C 0.15 6.33 1.98 45.03 0.09 6.42 16 18 H 0.03 1.21 5.69 -2.39 -0.01 1.19 16 19 C -0.13 -5.39 7.68 71.98 0.55 -4.84 16 20 N -0.60 -28.76 1.83 -649.91 -1.19 -29.95 16 21 C -0.26 -14.77 8.74 84.04 0.73 -14.03 16 22 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 23 C 0.02 1.22 4.19 84.86 0.36 1.58 16 24 N -0.94 -57.78 13.97 21.65 0.30 -57.48 16 25 Si 0.92 46.24 24.95 68.60 1.71 47.95 16 26 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 27 H -0.24 -11.00 4.48 99.48 0.45 -10.56 16 28 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 29 H 0.04 1.52 7.85 -2.39 -0.02 1.50 16 30 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.03 1.44 7.01 -2.38 -0.02 1.42 16 32 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.09 3.29 6.97 -2.39 -0.02 3.27 16 34 H 0.24 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.11 3.22 6.33 -2.39 -0.02 3.21 16 36 H 0.11 1.09 7.28 -2.39 -0.02 1.08 16 37 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.97 8.12 -2.39 -0.02 1.95 16 41 H 0.16 5.24 3.89 -58.97 -0.23 5.01 16 42 H 0.04 1.81 3.20 -2.39 -0.01 1.80 16 43 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.05 2.23 7.91 -2.39 -0.02 2.21 16 45 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -72.45 354.23 3.40 -69.04 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.53 Total: 16.07 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 6.77 Total: 10.67 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -4.32 Total: -124.45 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.06 Total: -21.78 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.71 Total: 47.95 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.23 Total: 2.49 kcal Total: -72.45 3.40 -69.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880466868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.164 kcal (2) G-P(sol) polarization free energy of solvation -72.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds