Wall clock time and date at job start Tue Mar 31 2020 19:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.61274 * 2 1 4 4 C 1.53376 * 109.60795 * 120.51660 * 2 1 3 5 5 N 1.46961 * 108.63483 * 70.31997 * 4 2 1 6 6 C 1.34783 * 120.59317 * 235.20334 * 5 4 2 7 7 O 1.21627 * 119.99732 * 8.47851 * 6 5 4 8 8 C 1.47262 * 119.99993 * 188.48490 * 6 5 4 9 9 N 1.33558 * 123.14509 * 7.45024 * 8 6 5 10 10 C 1.28647 * 115.76895 * 179.97438 * 9 8 6 11 11 S 1.70770 * 110.55942 * 359.97438 * 10 9 8 12 12 C 1.35208 * 123.13929 * 187.15901 * 8 6 5 13 13 C 1.50705 * 125.58430 * 0.02562 * 12 8 6 14 14 C 1.53005 * 117.49577 * 188.61787 * 13 12 8 15 15 C 1.52998 * 59.99938 * 252.51653 * 14 13 12 16 16 C 1.46963 * 118.81448 * 55.22304 * 5 4 2 17 17 C 1.53374 * 108.63566 * 304.77091 * 16 5 4 18 18 H 1.09001 * 109.75183 * 289.59779 * 17 16 5 19 19 C 1.53003 * 109.60726 * 169.16752 * 17 16 5 20 20 N 1.46962 * 109.60619 * 239.65636 * 2 1 3 21 21 C 1.36939 * 120.59301 * 115.45840 * 20 2 1 22 22 H 1.07994 * 120.00344 * 142.24924 * 21 20 2 23 23 C 1.38816 * 119.99962 * 322.25605 * 21 20 2 24 24 N 1.31618 * 119.99847 * 357.75399 * 23 21 20 25 25 Si 1.86802 * 119.99947 * 177.74988 * 23 21 20 26 26 H 1.48501 * 109.46872 * 60.00101 * 25 23 21 27 27 H 1.48496 * 109.47086 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47176 * 300.00219 * 25 23 21 29 29 H 1.09000 * 109.47264 * 180.34339 * 1 2 3 30 30 H 1.09004 * 109.46800 * 300.33766 * 1 2 3 31 31 H 1.08997 * 109.46948 * 60.33671 * 1 2 3 32 32 H 1.09005 * 109.60537 * 190.05708 * 4 2 1 33 33 H 1.08994 * 109.61060 * 310.57451 * 4 2 1 34 34 H 1.08001 * 124.72234 * 180.02562 * 10 9 8 35 35 H 1.08993 * 115.55054 * 334.33411 * 13 12 8 36 36 H 1.09002 * 117.49948 * 0.02562 * 14 13 12 37 37 H 1.08997 * 117.49369 * 145.01857 * 14 13 12 38 38 H 1.09008 * 117.49425 * 252.50824 * 15 14 13 39 39 H 1.08996 * 117.51763 * 107.49232 * 15 14 13 40 40 H 1.09008 * 109.60671 * 185.02872 * 16 5 4 41 41 H 1.08998 * 109.60904 * 64.52046 * 16 5 4 42 42 H 1.08993 * 109.47342 * 305.24326 * 19 17 16 43 43 H 1.09001 * 109.47048 * 65.24238 * 19 17 16 44 44 H 1.08997 * 109.46599 * 185.24150 * 19 17 16 45 45 H 0.97000 * 119.99221 * 185.00677 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8959 1.0267 0.0000 4 6 2.0447 -0.7337 1.2447 5 7 1.7605 -2.1678 1.0955 6 6 1.0605 -2.8300 2.0379 7 8 0.5266 -2.2164 2.9422 8 6 0.9421 -4.2964 1.9726 9 7 1.6171 -5.0452 1.0966 10 6 1.4066 -6.3125 1.1650 11 16 0.2852 -6.6682 2.4028 12 6 0.1441 -5.0110 2.7976 13 6 -0.7285 -4.4398 3.8855 14 6 -1.4021 -5.4263 4.8417 15 6 -2.2344 -4.6920 3.7886 16 6 2.2537 -2.8671 -0.0993 17 6 1.7389 -2.1335 -1.3440 18 1 0.6640 -2.2851 -1.4426 19 6 2.4497 -2.6713 -2.5876 20 7 2.0232 -0.6994 -1.1948 21 6 2.7344 -0.0266 -2.1523 22 1 3.5630 -0.5097 -2.6485 23 6 2.3902 1.2764 -2.4850 24 7 1.3533 1.8499 -1.9122 25 14 3.3989 2.2159 -3.7457 26 1 3.3667 1.4939 -5.0430 27 1 2.8286 3.5756 -3.9222 28 1 4.8030 2.3248 -3.2746 29 1 -0.3634 -1.0276 0.0062 30 1 -0.3633 0.5191 0.8870 31 1 -0.3633 0.5086 -0.8930 32 1 3.1199 -0.5818 1.3403 33 1 1.5384 -0.3506 2.1306 34 1 1.8745 -7.0491 0.5286 35 1 -0.4037 -3.4834 4.2951 36 1 -1.2139 -6.4883 4.6840 37 1 -1.5204 -5.1189 5.8807 38 1 -2.9004 -3.9016 4.1349 39 1 -2.5942 -5.2707 2.9378 40 1 1.8853 -3.8931 -0.1008 41 1 3.3437 -2.8672 -0.0993 42 1 3.5283 -2.5954 -2.4509 43 1 2.1753 -3.7152 -2.7400 44 1 2.1516 -2.0865 -3.4577 45 1 1.0689 2.7326 -2.1965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880466870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:17 Heat of formation + Delta-G solvation = 83.291410 kcal Electronic energy + Delta-G solvation = -28030.641597 eV Core-core repulsion = 24370.552520 eV Total energy + Delta-G solvation = -3660.089076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.69642 -38.67874 -37.50483 -36.97384 -33.89129 -32.54654 -31.27175 -30.49243 -27.85186 -26.92977 -25.92717 -24.96412 -23.62708 -22.64928 -22.19920 -21.93405 -20.64280 -19.27009 -18.50161 -18.08886 -16.47260 -16.26326 -15.69478 -15.41132 -15.15263 -14.98865 -14.69604 -14.30792 -13.94532 -13.78995 -13.43584 -13.34765 -13.07072 -12.47955 -12.24530 -12.11012 -11.85882 -11.78928 -11.62241 -11.49693 -11.14891 -11.08048 -10.89184 -10.82046 -10.66273 -10.56386 -10.50345 -10.09958 -9.96534 -9.73658 -9.62575 -9.59242 -9.44604 -8.92173 -8.87348 -8.39520 -8.01071 -6.38770 -5.77391 -3.30430 0.42292 1.07635 1.49116 2.03528 3.38444 3.44297 3.44815 3.54383 3.55382 3.78636 4.08441 4.36276 4.50105 4.64298 4.80902 4.95583 5.09607 5.36287 5.37717 5.41721 5.43403 5.61637 5.70617 5.87073 5.88938 6.01154 6.13690 6.17821 6.25199 6.34703 6.38771 6.48574 6.60312 6.66230 6.80725 6.95258 7.01643 7.06029 7.15801 7.25191 7.35305 7.70097 7.77385 7.86799 8.05899 8.56401 8.60981 9.26981 9.84625 10.47428 11.30356 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021544 B = 0.003528 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.372239 B = 7935.083982 C = 8782.807752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.182 3.818 3 H 0.106 0.894 4 C 0.090 3.910 5 N -0.571 5.571 6 C 0.583 3.417 7 O -0.548 6.548 8 C 0.012 3.988 9 N -0.422 5.422 10 C -0.011 4.011 11 S 0.186 5.814 12 C -0.151 4.151 13 C -0.086 4.086 14 C -0.178 4.178 15 C -0.161 4.161 16 C 0.066 3.934 17 C 0.155 3.845 18 H 0.025 0.975 19 C -0.131 4.131 20 N -0.583 5.583 21 C -0.252 4.252 22 H 0.064 0.936 23 C 0.013 3.987 24 N -0.899 5.899 25 Si 0.899 3.101 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.284 1.284 29 H 0.019 0.981 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.204 0.796 35 H 0.152 0.848 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.129 0.871 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.038 0.962 44 H 0.066 0.934 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 -18.235 9.511 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.075 3.925 3 H 0.124 0.876 4 C -0.034 4.034 5 N -0.300 5.300 6 C 0.368 3.632 7 O -0.427 6.427 8 C -0.122 4.122 9 N -0.136 5.136 10 C -0.310 4.310 11 S 0.442 5.558 12 C -0.275 4.275 13 C -0.106 4.106 14 C -0.216 4.216 15 C -0.199 4.199 16 C -0.058 4.058 17 C 0.047 3.953 18 H 0.043 0.957 19 C -0.189 4.189 20 N -0.306 5.306 21 C -0.382 4.382 22 H 0.082 0.918 23 C -0.186 4.186 24 N -0.543 5.543 25 Si 0.729 3.271 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.210 1.210 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.221 0.779 35 H 0.169 0.831 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.145 0.855 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.680 -18.409 9.886 21.217 hybrid contribution 0.717 1.452 -0.976 1.890 sum -2.962 -16.958 8.910 19.383 Atomic orbital electron populations 1.21967 0.98185 0.98314 1.00962 1.20717 0.92344 0.96742 0.82671 0.87629 1.22596 0.99869 0.79187 1.01711 1.47826 1.51579 1.10463 1.20134 1.17055 0.79497 0.84038 0.82572 1.90672 1.48190 1.67539 1.36320 1.20532 0.99331 0.96497 0.95820 1.67054 1.22433 1.03432 1.20729 1.28581 1.02615 0.96547 1.03229 1.82663 1.39603 1.04332 1.29209 1.24753 1.03072 0.97237 1.02439 1.20754 0.92363 1.01557 0.95907 1.23140 1.04430 0.97358 0.96674 1.23068 0.92538 1.03197 1.01076 1.23407 0.98975 0.98979 0.84463 1.20831 0.96081 0.86347 0.91994 0.95699 1.21718 1.00327 0.98207 0.98676 1.44089 1.63161 1.03240 1.20082 1.19038 1.08399 0.95710 1.15040 0.91824 1.25346 0.96509 0.98657 0.98072 1.69873 1.26240 1.15912 1.42245 0.86443 0.79710 0.79055 0.81928 1.20984 1.21710 1.20993 0.96224 0.95424 0.90691 0.92298 0.90259 0.77901 0.83094 0.88811 0.87719 0.87688 0.88678 0.85482 0.92507 0.92973 0.94322 0.91523 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.91 37.16 0.33 -2.88 16 2 C 0.18 4.36 2.33 -67.48 -0.16 4.21 16 3 H 0.11 2.82 6.24 -51.93 -0.32 2.50 16 4 C 0.09 1.91 5.97 -3.60 -0.02 1.89 16 5 N -0.57 -11.48 2.59 -173.81 -0.45 -11.93 16 6 C 0.58 11.31 7.64 -12.59 -0.10 11.22 16 7 O -0.55 -11.37 13.59 5.25 0.07 -11.30 16 8 C 0.01 0.19 6.48 -84.53 -0.55 -0.36 16 9 N -0.42 -6.04 6.79 -12.36 -0.08 -6.13 16 10 C -0.01 -0.11 12.17 51.43 0.63 0.51 16 11 S 0.19 1.69 21.77 -107.50 -2.34 -0.65 16 12 C -0.15 -2.02 6.04 -35.38 -0.21 -2.23 16 13 C -0.09 -1.07 5.48 -91.77 -0.50 -1.58 16 14 C -0.18 -1.61 10.03 -26.73 -0.27 -1.88 16 15 C -0.16 -1.65 10.23 -26.73 -0.27 -1.92 16 16 C 0.07 1.27 5.49 -3.60 -0.02 1.25 16 17 C 0.15 3.30 3.23 -67.48 -0.22 3.08 16 18 H 0.03 0.58 7.41 -51.93 -0.38 0.20 16 19 C -0.13 -2.49 8.02 37.16 0.30 -2.19 16 20 N -0.58 -14.26 2.66 -157.02 -0.42 -14.68 16 21 C -0.25 -6.63 8.24 -15.06 -0.12 -6.75 16 22 H 0.06 1.65 6.59 -52.49 -0.35 1.30 16 23 C 0.01 0.36 5.19 -17.43 -0.09 0.26 16 24 N -0.90 -25.02 9.76 55.49 0.54 -24.48 16 25 Si 0.90 21.23 29.56 -169.99 -5.02 16.21 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H 0.02 0.45 7.02 -51.93 -0.36 0.09 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.96 6.98 -51.93 -0.36 1.60 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.68 6.97 -51.93 -0.36 1.31 16 34 H 0.20 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.15 2.26 6.06 -51.93 -0.31 1.95 16 36 H 0.09 0.73 7.28 -51.93 -0.38 0.35 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.13 2.23 4.02 -74.58 -0.30 1.93 16 41 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 42 H 0.05 0.97 7.59 -51.93 -0.39 0.58 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.37 7.49 -51.93 -0.39 0.98 16 45 H 0.25 6.98 8.32 -40.82 -0.34 6.64 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -30.41 360.47 -9.98 -40.40 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.43 Total: 4.49 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.28 Total: 2.63 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.41 Total: -57.21 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.07 Total: -11.30 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.34 Total: -0.65 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.41 -9.98 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880466870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.689 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds